# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_31 - 231 OB_NTP_bind PF07717.11 114 0.00056 12.7 0.0 1 1 7.8e-06 0.00081 12.2 0.0 24 83 28 97 16 158 0.79 # 29629 # 30321 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_80 - 228 UPF0020 PF01170.13 180 1.2e-05 17.9 0.0 1 2 0.00026 0.027 7.0 0.0 103 123 17 37 4 88 0.71 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_80 - 228 UPF0020 PF01170.13 180 1.2e-05 17.9 0.0 2 2 6.3e-05 0.0065 9.0 0.0 28 54 163 189 158 220 0.67 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_95 - 181 cobW PF02492.14 178 0.00087 11.7 0.0 1 1 1.3e-05 0.0014 11.1 0.0 2 22 2 22 1 30 0.79 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_88 - 209 MipZ PF09140.6 261 1.9e-21 69.2 0.5 1 2 1.2e-12 1.2e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_88 - 209 MipZ PF09140.6 261 1.9e-21 69.2 0.5 2 2 1.6e-12 1.6e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_88 - 209 YhjQ PF06564.7 244 2.4e-05 16.7 0.3 1 2 1.8e-06 0.00019 13.8 0.3 4 38 3 37 1 50 0.89 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_88 - 209 YhjQ PF06564.7 244 2.4e-05 16.7 0.3 2 2 0.029 3 0.0 0.0 108 144 69 103 44 113 0.78 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_71 - 147 SSB PF00436.20 104 1.3e-27 88.7 0.6 1 1 1.7e-29 1.8e-27 88.3 0.6 26 101 2 80 1 83 0.94 # 65733 # 66173 # -1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.596 1_26 - 383 DUF87 PF01935.12 229 0.00064 12.5 0.0 1 1 1.1e-05 0.0012 11.7 0.0 28 56 162 191 161 192 0.88 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_26 - 383 AAA_22 PF13401.1 131 1e-05 18.6 0.0 1 1 7.4e-07 2.6e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_95 - 181 AAA_22 PF13401.1 131 1.8e-05 17.9 0.0 1 1 9.9e-07 3.4e-05 17.0 0.0 6 37 2 34 1 177 0.84 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 518 AAA_22 PF13401.1 131 0.00028 14.0 0.0 1 1 1.9e-05 0.00066 12.8 0.0 6 28 227 249 222 330 0.77 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_26 - 383 ATP_bind_1 PF03029.12 238 4.8e-05 15.9 0.0 1 1 7.2e-07 7.5e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_80 - 228 Methyltransf_11 PF08241.7 95 0.00065 13.2 0.0 1 2 0.0024 0.25 4.9 0.0 78 93 53 68 48 70 0.84 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_80 - 228 Methyltransf_11 PF08241.7 95 0.00065 13.2 0.0 2 2 0.0014 0.14 5.7 0.0 5 54 172 220 168 226 0.82 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_88 - 209 SRP54 PF00448.17 196 2.5e-07 23.2 0.1 1 1 1.5e-08 1.6e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_80 - 228 N6_N4_Mtase PF01555.13 231 6.6e-37 120.1 0.0 1 1 2.8e-36 2.9e-34 111.5 0.0 1 228 21 200 21 203 0.90 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_95 - 181 AAA_17 PF13207.1 121 6.4e-07 23.2 0.1 1 1 4.6e-08 1.2e-06 22.3 0.1 1 77 2 94 2 173 0.54 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_88 - 209 AAA_17 PF13207.1 121 1.6e-05 18.7 0.0 1 1 1.6e-06 4.3e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_26 - 383 AAA_17 PF13207.1 121 1.9e-05 18.4 0.1 1 1 9.4e-06 0.00025 14.9 0.0 3 47 161 208 161 251 0.76 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_13 - 518 AAA_17 PF13207.1 121 2.3e-05 18.2 0.2 1 1 4.1e-06 0.00011 16.0 0.0 1 24 227 255 227 345 0.72 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_26 - 383 MobB PF03205.9 140 1.9e-05 17.3 0.0 1 2 0.033 1.7 1.3 0.0 14 60 61 108 61 127 0.88 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_26 - 383 MobB PF03205.9 140 1.9e-05 17.3 0.0 2 2 6.2e-06 0.00032 13.4 0.0 5 26 162 183 160 193 0.90 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_88 - 209 MobB PF03205.9 140 5.9e-05 15.8 0.1 1 1 3.2e-06 0.00017 14.3 0.0 10 42 11 41 1 46 0.79 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_88 - 209 ArsA_ATPase PF02374.10 305 4.5e-08 25.4 0.9 1 3 1.2e-09 1.2e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_88 - 209 ArsA_ATPase PF02374.10 305 4.5e-08 25.4 0.9 2 3 0.053 5.6 -1.2 0.0 121 135 69 85 47 86 0.75 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_88 - 209 ArsA_ATPase PF02374.10 305 4.5e-08 25.4 0.9 3 3 0.075 7.8 -1.7 0.0 205 234 132 161 118 202 0.65 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_13 - 518 T2SE PF00437.15 272 2.5e-41 134.3 0.1 1 1 9.6e-43 5e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_26 - 383 T2SE PF00437.15 272 8.4e-36 116.2 0.0 1 1 2.4e-37 1.3e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_13 - 518 G-alpha PF00503.15 389 0.00065 11.3 0.0 1 2 0.054 5.6 -1.6 0.0 234 272 70 113 29 117 0.79 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 G-alpha PF00503.15 389 0.00065 11.3 0.0 2 2 1.9e-05 0.002 9.8 0.0 58 87 225 254 214 325 0.84 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_95 - 181 Cytidylate_kin2 PF13189.1 179 0.00048 13.0 0.0 1 2 6.6e-05 0.0068 9.3 0.0 1 23 2 24 2 46 0.78 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_95 - 181 Cytidylate_kin2 PF13189.1 179 0.00048 13.0 0.0 2 2 0.015 1.6 1.6 0.0 112 135 99 122 91 136 0.77 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_95 - 181 Zeta_toxin PF06414.7 201 4.7e-05 15.5 0.0 1 2 4.7e-06 0.00049 12.2 0.0 19 53 3 35 1 120 0.83 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_95 - 181 Zeta_toxin PF06414.7 201 4.7e-05 15.5 0.0 2 2 0.024 2.5 0.1 0.0 45 74 106 133 95 150 0.73 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_88 - 209 VirC1 PF07015.6 231 3.5e-09 29.0 0.0 1 1 7.1e-11 7.4e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_88 - 209 Fer4_NifH PF00142.13 273 7.7e-05 14.9 0.2 1 1 2.3e-06 0.00024 13.3 0.0 8 38 9 39 2 46 0.89 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_13 - 518 AAA_16 PF13191.1 185 9.7e-05 15.4 0.0 1 1 6.4e-06 0.00033 13.6 0.0 8 51 213 252 212 301 0.78 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_26 - 383 AAA_16 PF13191.1 185 0.0003 13.7 0.0 1 1 1.2e-05 0.00064 12.7 0.0 27 52 160 188 148 282 0.82 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_13 - 518 AAA_23 PF13476.1 202 0.00013 15.3 0.2 1 1 9.7e-06 0.00051 13.4 0.0 20 38 226 244 208 249 0.84 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_26 - 383 AAA_23 PF13476.1 202 0.00023 14.5 0.0 1 1 7.3e-06 0.00038 13.8 0.0 19 40 157 178 142 209 0.83 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_95 - 181 AAA_18 PF13238.1 129 7e-11 35.5 0.0 1 1 3.6e-12 1.2e-10 34.7 0.0 1 126 3 134 3 137 0.71 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_26 - 383 AAA_18 PF13238.1 129 1.6e-05 18.2 0.0 1 1 9e-07 3.1e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_13 - 518 AAA_18 PF13238.1 129 0.00034 13.9 0.0 1 1 3.2e-05 0.0011 12.2 0.0 1 18 228 245 228 316 0.86 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_88 - 209 CbiA PF01656.18 195 1.8e-22 72.6 0.0 1 1 3.1e-24 3.2e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_95 - 181 AAA_14 PF13173.1 128 0.00062 12.7 0.0 1 1 2.3e-05 0.0012 11.7 0.0 4 27 2 25 1 54 0.79 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 518 AAA_14 PF13173.1 128 0.00081 12.3 0.0 1 1 7.4e-05 0.0038 10.1 0.0 5 30 228 254 225 286 0.80 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA_29 PF13555.1 62 2.9e-05 16.5 0.0 1 1 1.1e-06 6e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_26 - 383 AAA_29 PF13555.1 62 4e-05 16.1 0.0 1 1 2.3e-06 0.00012 14.6 0.0 26 44 160 178 151 186 0.83 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_13 - 518 AAA PF00004.24 132 0.00026 14.2 0.1 1 3 0.064 6.7 -0.1 0.0 38 57 81 100 52 110 0.81 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA PF00004.24 132 0.00026 14.2 0.1 2 3 0.00033 0.034 7.3 0.0 1 21 228 248 228 278 0.83 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA PF00004.24 132 0.00026 14.2 0.1 3 3 0.017 1.8 1.8 0.0 9 66 442 508 436 515 0.64 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_53 - 764 TraG-D_C PF12696.2 128 1.3e-06 21.3 0.2 1 1 2.8e-08 2.9e-06 20.1 0.2 1 88 437 524 437 554 0.82 # 49618 # 51909 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_88 - 209 AAA_31 PF13614.1 157 4.5e-06 19.6 0.0 1 2 2.5e-07 2.6e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_88 - 209 AAA_31 PF13614.1 157 4.5e-06 19.6 0.0 2 2 0.055 5.7 -0.2 0.0 109 127 68 86 62 113 0.68 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_95 - 181 AAA_33 PF13671.1 143 6e-11 35.4 0.0 1 1 7.3e-13 7.6e-11 35.0 0.0 2 127 3 130 2 151 0.75 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_80 - 228 Methyltransf_26 PF13659.1 117 7.2e-12 38.4 0.1 1 2 1.5e-07 1.6e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_80 - 228 Methyltransf_26 PF13659.1 117 7.2e-12 38.4 0.1 2 2 1e-07 1.1e-05 18.5 0.0 4 44 167 206 164 222 0.82 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_13 - 518 AAA_30 PF13604.1 196 0.00033 13.2 0.0 1 1 5.8e-06 0.0006 12.4 0.0 4 44 211 251 209 276 0.84 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_23 - 195 DNA_pol3_delta PF06144.8 172 2.2e-06 20.3 0.0 1 1 3e-08 3.1e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 21163 # 21747 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_13 - 518 ABC_tran PF00005.22 137 7.8e-05 16.0 0.0 1 1 5.3e-06 0.00028 14.2 0.0 12 37 226 251 217 288 0.81 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_26 - 383 ABC_tran PF00005.22 137 0.00012 15.4 0.0 1 1 4.3e-06 0.00022 14.5 0.0 16 35 162 181 152 211 0.87 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_95 - 181 TIGR03263 TIGR03263 180 0.00075 11.8 0.0 1 1 1.6e-05 0.0017 10.7 0.0 3 26 2 25 1 31 0.81 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_80 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.6 0.0 1 2 0.00039 0.041 6.2 0.0 112 146 18 54 9 81 0.65 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_80 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.6 0.0 2 2 3.9e-05 0.0041 9.5 0.0 41 62 162 183 145 219 0.78 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_13 - 518 DAP3 PF10236.4 309 0.00065 11.6 0.0 1 1 1.2e-05 0.0012 10.7 0.0 21 42 223 244 215 253 0.86 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA_19 PF13245.1 76 9.9e-05 15.1 0.0 1 1 7.9e-06 0.00027 13.7 0.0 10 46 226 259 218 268 0.79 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_95 - 181 AAA_19 PF13245.1 76 0.00024 13.8 0.0 1 1 2.5e-05 0.00085 12.1 0.0 15 33 5 22 2 38 0.84 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_88 - 209 AAA_19 PF13245.1 76 0.0003 13.5 0.1 1 2 0.00029 0.01 8.6 0.0 20 48 11 35 9 44 0.84 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_88 - 209 AAA_19 PF13245.1 76 0.0003 13.5 0.1 2 2 0.032 1.1 2.1 0.0 42 63 135 158 118 184 0.76 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_39 - 1015 AAA_10 PF12846.2 304 5.9e-31 100.9 0.0 1 1 6.7e-32 1.4e-30 99.7 0.0 8 302 502 897 498 898 0.89 # 35419 # 38463 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 1_53 - 764 AAA_10 PF12846.2 304 2.5e-05 16.8 1.0 1 1 3.6e-06 7.5e-05 15.2 0.9 2 287 137 501 136 514 0.62 # 49618 # 51909 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_88 - 209 AAA_10 PF12846.2 304 0.00016 14.1 0.0 1 1 1.3e-05 0.00026 13.4 0.0 11 39 11 39 3 66 0.90 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_13 - 518 AAA_10 PF12846.2 304 0.00023 13.6 0.0 1 1 2.1e-05 0.00044 12.7 0.0 4 30 228 256 226 320 0.81 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_26 - 383 AAA_10 PF12846.2 304 0.00053 12.4 0.0 1 1 5e-05 0.001 11.4 0.0 2 21 158 177 157 196 0.83 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_57 - 283 Methyltransf_27 PF13708.1 194 1.7e-66 216.4 0.0 1 1 2.3e-68 2.3e-66 215.9 0.0 2 194 85 278 84 278 0.96 # 55643 # 56491 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_53 - 764 TrwB_AAD_bind PF10412.4 386 4.2e-07 21.8 0.3 1 2 9.3e-05 0.0097 7.4 0.0 11 32 132 153 126 157 0.84 # 49618 # 51909 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_53 - 764 TrwB_AAD_bind PF10412.4 386 4.2e-07 21.8 0.3 2 2 5.3e-06 0.00055 11.5 0.1 247 332 440 525 427 555 0.88 # 49618 # 51909 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_80 - 228 MethyltransfD12 PF02086.10 260 0.00045 12.6 0.0 1 2 0.016 1.6 1.0 0.0 175 188 18 31 8 90 0.82 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_80 - 228 MethyltransfD12 PF02086.10 260 0.00045 12.6 0.0 2 2 4e-05 0.0042 9.5 0.0 20 46 163 189 148 197 0.78 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_26 - 383 RNA_helicase PF00910.17 107 0.0001 15.5 0.0 1 1 3.8e-06 0.0002 14.5 0.0 2 28 161 187 160 205 0.83 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_95 - 181 RNA_helicase PF00910.17 107 0.0006 13.0 0.0 1 1 1.8e-05 0.00095 12.3 0.0 1 26 3 28 3 47 0.84 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_95 - 181 UPF0079 PF02367.12 123 0.00021 13.9 0.0 1 1 3.3e-06 0.00034 13.2 0.0 17 36 2 21 1 30 0.88 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_95 - 181 AAA_24 PF13479.1 213 7.5e-05 15.3 0.0 1 1 1.4e-06 0.00014 14.4 0.0 6 33 3 34 1 73 0.90 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_2 - 178 TIGR00922 TIGR00922 172 0.00083 11.9 0.0 1 1 9.5e-06 0.00099 11.6 0.0 47 103 51 109 24 142 0.80 # 1407 # 1940 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.436 1_95 - 181 NACHT PF05729.7 166 1.6e-05 17.6 0.0 1 2 7.7e-07 8e-05 15.3 0.0 2 22 2 22 1 37 0.89 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_95 - 181 NACHT PF05729.7 166 1.6e-05 17.6 0.0 2 2 0.045 4.7 -0.2 0.0 77 91 151 177 95 179 0.61 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_88 - 209 AAA_25 PF13481.1 194 0.00012 14.4 0.1 1 1 9.3e-06 0.00032 13.1 0.0 42 87 10 44 3 90 0.78 # 79385 # 80011 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_26 - 383 AAA_25 PF13481.1 194 0.0002 13.7 0.0 1 1 1.1e-05 0.00037 12.9 0.0 24 58 148 182 124 207 0.78 # 23412 # 24560 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_13 - 518 AAA_25 PF13481.1 194 0.00029 13.2 0.1 1 2 0.00013 0.0045 9.3 0.0 25 65 217 260 200 270 0.72 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA_25 PF13481.1 194 0.00029 13.2 0.1 2 2 0.058 2 0.7 0.0 153 190 297 337 292 340 0.74 # 10123 # 11676 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_80 - 228 Methyltransf_15 PF09445.5 164 0.0008 11.9 0.0 1 2 0.042 4.4 -0.2 0.0 53 79 4 29 2 33 0.90 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_80 - 228 Methyltransf_15 PF09445.5 164 0.0008 11.9 0.0 2 2 4.3e-05 0.0045 9.5 0.0 3 31 166 194 164 208 0.86 # 72669 # 73352 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_95 - 181 AAA_28 PF13521.1 163 0.00014 14.8 0.0 1 1 2.9e-06 0.0003 13.7 0.0 2 30 3 34 2 165 0.89 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_95 - 181 APS_kinase PF01583.15 157 1.4e-05 17.7 0.0 1 2 7.3e-06 0.00076 12.1 0.0 4 24 2 22 1 35 0.87 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_95 - 181 APS_kinase PF01583.15 157 1.4e-05 17.7 0.0 2 2 0.0032 0.34 3.5 0.1 34 73 107 148 95 160 0.86 # 87084 # 87626 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b5babfcd-9241-41f9-bfcb-e7246fe06b51 # Target file: checkm_output/bins/pm1680/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1680/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b5babfcd-9241-41f9-bfcb-e7246fe06b51 checkm_output/bins/pm1680/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:59:27 2020 # [ok]