# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 308 UPF0020 PF01170.13 180 3.7e-06 16.2 0.1 1 2 0.00023 0.0023 7.2 0.0 99 118 25 45 8 110 0.69 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 UPF0020 PF01170.13 180 3.7e-06 16.2 0.1 2 2 0.00037 0.0037 6.5 0.0 23 39 209 225 202 282 0.91 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_18 PF12847.2 112 0.00011 12.5 0.0 1 2 0.00061 0.0061 6.9 0.0 54 109 15 84 6 87 0.73 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_18 PF12847.2 112 0.00011 12.5 0.0 2 2 0.0094 0.094 3.0 0.0 23 46 234 274 223 304 0.62 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_2 - 691 DUF87 PF01935.12 229 8.5e-28 87.3 0.0 1 2 4.5e-26 4.5e-25 78.4 0.0 8 154 160 317 153 386 0.78 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_2 - 691 DUF87 PF01935.12 229 8.5e-28 87.3 0.0 2 2 0.0004 0.004 6.6 0.0 201 229 481 509 402 509 0.88 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_2 - 691 AAA_22 PF13401.1 131 5.3e-06 16.3 0.0 1 1 4.4e-06 4.4e-05 13.3 0.0 5 45 176 219 174 250 0.79 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 308 Methyltransf_11 PF08241.7 95 4.1e-06 17.0 0.3 1 2 3.6e-05 0.00036 10.7 0.1 74 95 63 84 2 84 0.70 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_11 PF08241.7 95 4.1e-06 17.0 0.3 2 2 0.091 0.91 -0.2 0.0 25 42 260 277 225 296 0.57 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 N6_N4_Mtase PF01555.13 231 3e-56 180.1 0.1 1 1 4.8e-57 4.8e-56 179.4 0.1 1 227 34 250 34 254 0.93 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 RsmJ PF04378.8 245 6.7e-06 14.8 0.0 1 1 1.2e-06 1.2e-05 14.0 0.0 99 150 9 58 4 64 0.84 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_26 PF13659.1 117 6.1e-14 41.8 0.0 1 2 3e-10 3e-09 26.7 0.0 50 114 13 85 6 88 0.75 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_26 PF13659.1 117 6.1e-14 41.8 0.0 2 2 4.8e-06 4.8e-05 13.1 0.0 1 39 215 252 215 292 0.86 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_2 - 691 FtsK_SpoIIIE PF01580.13 205 1e-07 21.2 0.0 1 2 1.6e-07 1.6e-06 17.4 0.0 29 79 164 220 140 232 0.66 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_2 - 691 FtsK_SpoIIIE PF01580.13 205 1e-07 21.2 0.0 2 2 0.043 0.43 -0.4 0.0 180 204 555 579 511 580 0.82 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 308 Cons_hypoth95 PF03602.10 183 1.9e-07 20.3 0.0 1 2 1.2e-07 1.2e-06 17.7 0.0 93 140 14 59 3 101 0.78 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Cons_hypoth95 PF03602.10 183 1.9e-07 20.3 0.0 2 2 0.035 0.35 -0.1 0.0 44 57 216 229 207 284 0.72 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_2 - 691 AAA_10 PF12846.2 304 2.4e-21 66.0 0.0 1 1 2.4e-21 2.4e-20 62.7 0.0 2 297 176 608 175 613 0.72 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 308 Methyltransf_31 PF13847.1 152 1.7e-10 30.3 1.2 1 3 2.6e-07 2.6e-06 16.8 0.0 55 112 14 88 3 145 0.79 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_31 PF13847.1 152 1.7e-10 30.3 1.2 2 3 0.00067 0.0067 5.7 0.0 3 44 214 252 212 260 0.76 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_31 PF13847.1 152 1.7e-10 30.3 1.2 3 3 0.00085 0.0085 5.3 0.2 35 69 261 296 256 303 0.87 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_2 - 691 TrwB_AAD_bind PF10412.4 386 5.4e-10 28.0 0.0 1 2 2e-08 2e-07 19.5 0.0 10 58 170 226 162 232 0.88 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_2 - 691 TrwB_AAD_bind PF10412.4 386 5.4e-10 28.0 0.0 2 2 0.00025 0.0025 6.0 0.0 261 321 557 609 554 620 0.85 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 308 MethyltransfD12 PF02086.10 260 1.3e-05 14.4 0.1 1 2 1.9e-05 0.00019 10.5 0.0 163 220 18 73 2 110 0.64 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 MethyltransfD12 PF02086.10 260 1.3e-05 14.4 0.1 2 2 0.011 0.11 1.5 0.1 17 56 212 250 201 301 0.68 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_15 PF09445.5 164 3.3e-05 13.1 0.0 1 2 0.00015 0.0015 7.7 0.0 48 80 12 43 6 50 0.87 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_15 PF09445.5 164 3.3e-05 13.1 0.0 2 2 0.0043 0.043 3.0 0.0 3 37 217 251 215 257 0.70 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5a8d3f03-f6ef-4a78-a4d4-e292d64424f4 # Target file: checkm_output/bins/pm1672/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1672/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5a8d3f03-f6ef-4a78-a4d4-e292d64424f4 checkm_output/bins/pm1672/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:59:21 2020 # [ok]