# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 231 OB_NTP_bind PF07717.11 114 0.0006 12.5 0.0 1 1 9.9e-06 0.00096 11.9 0.0 24 83 28 97 16 127 0.77 # 13579 # 14271 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_55 - 228 UPF0020 PF01170.13 180 1.4e-05 17.6 0.0 1 2 0.00028 0.027 6.9 0.0 103 121 17 35 4 89 0.71 # 52172 # 52855 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_55 - 228 UPF0020 PF01170.13 180 1.4e-05 17.6 0.0 2 2 7.3e-05 0.007 8.8 0.0 28 54 163 189 160 221 0.66 # 52172 # 52855 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_63 - 215 MipZ PF09140.6 261 2.3e-08 26.2 2.3 1 2 0.0008 0.078 4.8 0.5 7 25 8 26 2 38 0.71 # 58714 # 59358 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_63 - 215 MipZ PF09140.6 261 2.3e-08 26.2 2.3 2 2 9e-09 8.7e-07 21.1 0.1 70 133 45 108 25 125 0.84 # 58714 # 59358 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_48 - 176 SSB PF00436.20 104 4.6e-40 128.6 0.3 1 1 6.3e-42 6.1e-40 128.2 0.3 1 101 6 109 6 112 0.96 # 47889 # 48416 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 1_7 - 383 DUF87 PF01935.12 229 0.00059 12.5 0.0 1 1 1.1e-05 0.0011 11.7 0.0 28 56 162 191 161 192 0.88 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_7 - 383 AAA_22 PF13401.1 131 9.7e-06 18.6 0.0 1 1 4.9e-07 2.4e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_92 - 402 AAA_22 PF13401.1 131 0.0002 14.4 0.0 1 1 8.6e-06 0.00042 13.3 0.0 6 28 111 133 106 215 0.76 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_7 - 383 ATP_bind_1 PF03029.12 238 4.5e-05 15.9 0.0 1 1 7.2e-07 7e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_55 - 228 N6_N4_Mtase PF01555.13 231 6.8e-36 116.7 0.0 1 2 7.6e-15 7.3e-13 41.3 0.0 1 114 21 124 21 137 0.89 # 52172 # 52855 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_55 - 228 N6_N4_Mtase PF01555.13 231 6.8e-36 116.7 0.0 2 2 9.2e-25 8.9e-23 73.8 0.0 169 228 141 200 126 203 0.90 # 52172 # 52855 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_7 - 383 AAA_17 PF13207.1 121 1.8e-05 18.4 0.1 1 2 4.7e-06 0.00023 14.9 0.0 3 47 161 208 161 251 0.76 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_7 - 383 AAA_17 PF13207.1 121 1.8e-05 18.4 0.1 2 2 0.086 4.2 1.1 0.1 24 113 332 363 274 374 0.60 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_92 - 402 AAA_17 PF13207.1 121 2.4e-05 18.1 0.1 1 1 1.5e-06 7.1e-05 16.5 0.0 1 24 111 139 111 231 0.73 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_7 - 383 MobB PF03205.9 140 1.8e-05 17.3 0.0 1 2 0.017 1.6 1.3 0.0 14 60 61 108 61 127 0.88 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_7 - 383 MobB PF03205.9 140 1.8e-05 17.3 0.0 2 2 3.1e-06 0.0003 13.4 0.0 5 26 162 183 160 193 0.90 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_92 - 402 T2SE PF00437.15 272 5.1e-40 129.9 0.0 1 1 1.4e-41 7e-40 129.4 0.0 68 271 43 257 13 258 0.89 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_7 - 383 T2SE PF00437.15 272 7.8e-36 116.2 0.0 1 1 2.4e-37 1.2e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_92 - 402 G-alpha PF00503.15 389 0.00093 10.7 0.0 1 1 1.3e-05 0.0013 10.3 0.0 58 87 109 138 98 208 0.84 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_63 - 215 VirC1 PF07015.6 231 0.00039 12.4 0.0 1 2 0.00073 0.071 5.0 0.0 3 29 3 29 1 36 0.81 # 58714 # 59358 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_63 - 215 VirC1 PF07015.6 231 0.00039 12.4 0.0 2 2 0.00052 0.05 5.5 0.0 87 190 77 181 59 194 0.70 # 58714 # 59358 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_92 - 402 AAA_16 PF13191.1 185 5.1e-05 16.2 0.0 1 1 3.1e-06 0.00015 14.6 0.0 8 52 97 138 96 218 0.81 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_7 - 383 AAA_16 PF13191.1 185 0.00028 13.7 0.0 1 1 1.2e-05 0.00059 12.7 0.0 27 52 160 188 148 282 0.82 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_7 - 383 AAA_23 PF13476.1 202 0.00021 14.5 0.0 1 1 7.3e-06 0.00036 13.8 0.0 19 40 157 178 142 209 0.83 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_92 - 402 AAA_23 PF13476.1 202 0.00024 14.3 0.0 1 1 8.1e-06 0.00039 13.6 0.0 20 38 110 128 93 133 0.86 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_7 - 383 AAA_18 PF13238.1 129 1.5e-05 18.2 0.0 1 1 6e-07 2.9e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_92 - 402 AAA_18 PF13238.1 129 0.00028 14.1 0.1 1 1 1.5e-05 0.00073 12.7 0.0 1 18 112 129 112 201 0.86 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_63 - 215 CbiA PF01656.18 195 1.2e-09 30.7 0.1 1 1 1.8e-11 1.7e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 58714 # 59358 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_92 - 402 AAA_14 PF13173.1 128 0.0011 11.8 0.0 1 1 2.5e-05 0.0025 10.6 0.0 5 30 112 138 109 173 0.80 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_92 - 402 AAA_29 PF13555.1 62 1.9e-05 17.0 0.0 1 1 7.8e-07 3.8e-05 16.1 0.0 21 40 108 126 100 139 0.83 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_7 - 383 AAA_29 PF13555.1 62 3.7e-05 16.1 0.0 1 1 2.3e-06 0.00011 14.6 0.0 26 44 160 178 151 186 0.83 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_32 - 764 TraG-D_C PF12696.2 128 5.1e-07 22.5 0.2 1 1 1.2e-08 1.1e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 32363 # 34654 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_55 - 228 Methyltransf_26 PF13659.1 117 1e-11 37.8 0.1 1 2 2.6e-07 2.5e-05 17.2 0.0 57 114 7 71 2 74 0.69 # 52172 # 52855 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_55 - 228 Methyltransf_26 PF13659.1 117 1e-11 37.8 0.1 2 2 9.7e-08 9.4e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 52172 # 52855 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_92 - 402 AAA_30 PF13604.1 196 0.00012 14.5 0.0 1 1 2.2e-06 0.00021 13.8 0.0 4 44 95 135 93 170 0.86 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_4 - 195 DNA_pol3_delta PF06144.8 172 2e-06 20.3 0.0 1 1 3e-08 2.9e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 5110 # 5694 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_92 - 402 ABC_tran PF00005.22 137 5.9e-05 16.3 0.0 1 1 3e-06 0.00015 15.0 0.0 12 40 110 139 100 186 0.81 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_7 - 383 ABC_tran PF00005.22 137 0.00011 15.4 0.0 1 1 4.3e-06 0.00021 14.5 0.0 16 35 162 181 152 211 0.87 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_55 - 228 Cons_hypoth95 PF03602.10 183 7.2e-06 18.3 0.0 1 2 0.00027 0.026 6.8 0.0 112 168 18 76 9 83 0.68 # 52172 # 52855 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_55 - 228 Cons_hypoth95 PF03602.10 183 7.2e-06 18.3 0.0 2 2 3.5e-05 0.0034 9.6 0.0 41 62 162 183 144 218 0.77 # 52172 # 52855 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_92 - 402 DAP3 PF10236.4 309 0.0005 11.9 0.0 1 1 8.8e-06 0.00085 11.1 0.0 21 42 107 128 98 137 0.86 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_92 - 402 AAA_19 PF13245.1 76 7.2e-05 15.4 0.2 1 1 1.9e-06 0.00018 14.1 0.0 10 46 110 143 102 157 0.80 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_20 - 1015 AAA_10 PF12846.2 304 1.1e-30 99.9 0.0 1 1 1e-31 2.5e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 19369 # 22413 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_32 - 764 AAA_10 PF12846.2 304 2e-05 17.0 0.9 1 1 2.3e-06 5.5e-05 15.5 0.9 2 287 137 501 136 515 0.63 # 32363 # 34654 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_92 - 402 AAA_10 PF12846.2 304 0.00017 13.9 0.0 1 1 1.1e-05 0.00027 13.2 0.0 4 30 112 140 110 200 0.80 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_7 - 383 AAA_10 PF12846.2 304 0.00049 12.4 0.0 1 1 4e-05 0.00098 11.4 0.0 2 21 158 177 157 196 0.83 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_15 - 235 DUF3584 PF12128.3 1201 0.00026 11.2 2.8 1 1 3.4e-06 0.00033 10.9 2.8 341 434 67 159 62 179 0.80 # 16557 # 17261 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.506 1_36 - 283 Methyltransf_27 PF13708.1 194 1.2e-66 216.8 0.0 1 1 1.6e-68 1.6e-66 216.4 0.0 2 194 85 278 84 278 0.96 # 38389 # 39237 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_32 - 764 TrwB_AAD_bind PF10412.4 386 2.2e-06 19.3 0.2 1 2 9.3e-05 0.0091 7.4 0.0 11 32 132 153 126 157 0.84 # 32363 # 34654 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_32 - 764 TrwB_AAD_bind PF10412.4 386 2.2e-06 19.3 0.2 2 2 3e-05 0.0029 9.0 0.1 247 332 440 525 427 555 0.88 # 32363 # 34654 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_55 - 228 MethyltransfD12 PF02086.10 260 0.00033 13.0 0.0 1 2 0.014 1.4 1.1 0.0 175 188 18 31 8 91 0.80 # 52172 # 52855 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_55 - 228 MethyltransfD12 PF02086.10 260 0.00033 13.0 0.0 2 2 3.3e-05 0.0032 9.7 0.0 16 46 157 189 148 197 0.78 # 52172 # 52855 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_7 - 383 RNA_helicase PF00910.17 107 9.3e-05 15.5 0.0 1 1 1.9e-06 0.00018 14.5 0.0 2 28 161 187 160 205 0.83 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_81 - 178 TIGR00922 TIGR00922 172 0.00077 11.9 0.0 1 1 9.5e-06 0.00092 11.6 0.0 47 103 51 109 24 142 0.80 # 74987 # 75520 # 1 # ID=1_81;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.436 1_7 - 383 AAA_25 PF13481.1 194 0.00019 13.7 0.0 1 1 7e-06 0.00034 12.9 0.0 24 58 148 182 124 207 0.78 # 7359 # 8507 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_92 - 402 AAA_25 PF13481.1 194 0.00021 13.6 0.0 1 2 5.3e-05 0.0025 10.0 0.0 19 65 95 144 84 154 0.72 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_92 - 402 AAA_25 PF13481.1 194 0.00021 13.6 0.0 2 2 0.033 1.6 0.9 0.0 153 190 181 221 176 224 0.73 # 84272 # 85477 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_55 - 228 Methyltransf_15 PF09445.5 164 0.00077 11.9 0.0 1 2 0.045 4.3 -0.3 0.0 53 79 4 29 2 32 0.90 # 52172 # 52855 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_55 - 228 Methyltransf_15 PF09445.5 164 0.00077 11.9 0.0 2 2 4.2e-05 0.0041 9.5 0.0 3 31 166 194 164 209 0.86 # 52172 # 52855 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b9a0ac5f-e5fd-4077-b1f1-8e9bce13a91f # Target file: checkm_output/bins/pm1651/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1651/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b9a0ac5f-e5fd-4077-b1f1-8e9bce13a91f checkm_output/bins/pm1651/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:59:09 2020 # [ok]