# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_31 - 228 UPF0020 PF01170.13 180 1.4e-05 17.6 0.0 1 2 0.00031 0.032 6.7 0.0 103 119 17 33 4 88 0.73 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_31 - 228 UPF0020 PF01170.13 180 1.4e-05 17.6 0.0 2 2 6.3e-05 0.0065 9.0 0.0 28 54 163 189 158 220 0.67 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_66 - 503 Rad17 PF03215.10 519 0.0013 10.4 0.0 1 1 1.9e-05 0.0019 9.8 0.0 42 69 226 253 217 264 0.81 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_42 - 215 MipZ PF09140.6 261 2.4e-08 26.2 2.3 1 2 0.0008 0.083 4.8 0.5 7 25 8 26 2 38 0.71 # 34202 # 34846 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_42 - 215 MipZ PF09140.6 261 2.4e-08 26.2 2.3 2 2 9e-09 9.3e-07 21.1 0.1 70 133 45 108 25 125 0.84 # 34202 # 34846 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_24 - 176 SSB PF00436.20 104 6.7e-41 131.4 0.3 1 1 8.6e-43 8.9e-41 131.0 0.3 1 101 6 109 6 112 0.96 # 21042 # 21569 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_4 - 768 DUF87 PF01935.12 229 0.00047 12.9 0.0 1 1 5e-05 0.0026 10.5 0.0 16 40 130 153 120 168 0.80 # 3736 # 6039 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 2_8 - 383 DUF87 PF01935.12 229 0.00057 12.7 0.0 1 1 2.1e-05 0.0011 11.8 0.0 28 46 162 180 161 192 0.87 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_8 - 383 NB-ARC PF00931.17 287 0.0003 12.6 0.0 1 2 9.7e-06 0.001 10.9 0.0 18 49 156 185 145 192 0.81 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_8 - 383 NB-ARC PF00931.17 287 0.0003 12.6 0.0 2 2 0.069 7.1 -1.7 0.0 208 236 331 357 326 367 0.70 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_8 - 383 AAA_22 PF13401.1 131 3.8e-06 20.0 0.0 1 1 1.5e-07 7.8e-06 19.0 0.0 3 48 156 198 153 233 0.77 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_66 - 503 AAA_22 PF13401.1 131 5.4e-06 19.5 0.0 1 1 2e-07 1e-05 18.6 0.0 4 49 229 281 225 330 0.84 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_31 - 228 Methyltransf_11 PF08241.7 95 0.00063 13.2 0.0 1 2 0.0024 0.25 4.9 0.0 78 93 53 68 47 70 0.84 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_31 - 228 Methyltransf_11 PF08241.7 95 0.00063 13.2 0.0 2 2 0.0014 0.14 5.7 0.0 5 54 172 220 168 226 0.82 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_31 - 228 N6_N4_Mtase PF01555.13 231 9.2e-37 119.6 0.0 1 2 1.8e-15 1.9e-13 43.4 0.0 1 114 21 124 21 133 0.89 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_31 - 228 N6_N4_Mtase PF01555.13 231 9.2e-37 119.6 0.0 2 2 5.3e-25 5.4e-23 74.6 0.0 169 228 141 200 126 203 0.90 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_66 - 503 AAA_17 PF13207.1 121 5e-05 17.1 0.0 1 1 2.7e-06 0.00014 15.6 0.0 1 32 231 264 231 361 0.79 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_8 - 383 AAA_17 PF13207.1 121 0.0004 14.2 0.0 1 1 1.8e-05 0.00094 13.0 0.0 3 22 161 180 161 245 0.81 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_66 - 503 T2SE PF00437.15 272 3.8e-38 123.8 0.0 1 1 1.1e-39 5.8e-38 123.2 0.0 66 269 161 378 143 381 0.87 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_8 - 383 T2SE PF00437.15 272 5.9e-35 113.4 0.0 1 1 1.6e-36 8.2e-35 112.9 0.0 115 263 148 298 79 309 0.82 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_66 - 503 Zeta_toxin PF06414.7 201 0.0009 11.3 0.0 1 1 1.5e-05 0.0015 10.6 0.0 18 39 231 252 216 259 0.80 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_42 - 215 VirC1 PF07015.6 231 0.00042 12.4 0.0 1 2 0.00073 0.075 5.0 0.0 3 29 3 29 1 36 0.81 # 34202 # 34846 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_42 - 215 VirC1 PF07015.6 231 0.00042 12.4 0.0 2 2 0.00052 0.053 5.5 0.0 87 190 77 181 59 194 0.70 # 34202 # 34846 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 2_8 - 383 AAA_16 PF13191.1 185 4.3e-05 16.5 0.1 1 1 2.9e-06 0.00015 14.8 0.0 25 61 158 191 148 284 0.84 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_66 - 503 AAA_16 PF13191.1 185 5.1e-05 16.3 0.0 1 1 1.7e-06 8.5e-05 15.5 0.0 22 52 227 263 216 369 0.84 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_8 - 383 AAA_23 PF13476.1 202 1.8e-05 18.0 0.0 1 1 6.7e-07 3.5e-05 17.1 0.0 20 46 158 185 144 218 0.81 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_66 - 503 AAA_23 PF13476.1 202 7.6e-05 16.0 0.0 1 1 2.8e-06 0.00015 15.1 0.0 20 37 230 247 224 262 0.90 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_8 - 383 AAA_18 PF13238.1 129 0.00011 15.5 0.0 1 1 3.9e-06 0.0002 14.6 0.0 2 38 161 193 161 238 0.71 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_66 - 503 AAA_18 PF13238.1 129 0.0012 12.1 0.1 1 1 5.3e-05 0.0027 11.0 0.1 1 18 232 249 232 267 0.87 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_42 - 215 CbiA PF01656.18 195 1.3e-09 30.7 0.1 1 1 1.8e-11 1.8e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 34202 # 34846 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_66 - 503 AAA_14 PF13173.1 128 0.0012 11.8 0.0 1 1 2.2e-05 0.0023 10.8 0.0 3 30 230 255 228 267 0.86 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_66 - 503 AAA_29 PF13555.1 62 1.6e-05 17.4 0.0 1 1 7.6e-07 3.9e-05 16.1 0.0 20 40 227 246 218 255 0.84 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_8 - 383 AAA_29 PF13555.1 62 2.2e-05 16.9 0.0 1 1 1.1e-06 5.6e-05 15.6 0.0 25 43 159 177 149 185 0.84 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_18 - 84 tRNA-synt_1_2 PF13603.1 185 0.0011 11.3 0.0 1 1 1.1e-05 0.0012 11.1 0.0 105 156 8 56 5 70 0.80 # 17139 # 17390 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 2_8 - 383 Sigma54_activat PF00158.21 168 0.00068 12.1 0.0 1 1 1.3e-05 0.0013 11.2 0.0 26 47 161 182 145 193 0.84 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_4 - 768 TraG-D_C PF12696.2 128 5.1e-08 25.8 0.2 1 1 5e-10 5.1e-08 25.8 0.2 1 90 437 525 437 558 0.83 # 3736 # 6039 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_66 - 503 AAA_33 PF13671.1 143 0.00063 12.6 0.0 1 1 1.6e-05 0.0017 11.2 0.0 1 19 231 249 231 333 0.71 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_31 - 228 Methyltransf_26 PF13659.1 117 9.7e-12 38.0 0.1 1 2 2.1e-07 2.2e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_31 - 228 Methyltransf_26 PF13659.1 117 9.7e-12 38.0 0.1 2 2 1e-07 1.1e-05 18.5 0.0 4 44 167 206 164 222 0.82 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_66 - 503 AAA_30 PF13604.1 196 5.9e-08 25.4 0.0 1 1 1.1e-09 1.1e-07 24.5 0.0 2 45 213 256 212 263 0.92 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_5 - 195 DNA_pol3_delta PF06144.8 172 2.1e-06 20.3 0.0 1 1 3e-08 3.1e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 4213 # 4797 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 2_8 - 383 FtsK_SpoIIIE PF01580.13 205 0.00073 12.0 0.0 1 1 1.2e-05 0.0012 11.2 0.0 40 60 159 179 128 231 0.80 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_15 - 238 AAA_27 PF13514.1 1111 0.00045 10.9 3.0 1 1 5.6e-06 0.00058 10.5 3.0 316 391 97 171 94 182 0.90 # 15397 # 16110 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.594 2_8 - 383 ABC_tran PF00005.22 137 2.2e-05 17.8 0.0 1 1 8.1e-07 4.2e-05 16.8 0.0 15 37 161 183 150 212 0.84 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_66 - 503 ABC_tran PF00005.22 137 0.00036 13.8 0.0 1 1 1.2e-05 0.00063 13.0 0.0 12 37 230 255 224 364 0.90 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_31 - 228 Cons_hypoth95 PF03602.10 183 1.4e-05 17.5 0.0 1 2 0.00042 0.043 6.1 0.0 112 146 18 54 9 82 0.66 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_31 - 228 Cons_hypoth95 PF03602.10 183 1.4e-05 17.5 0.0 2 2 3.9e-05 0.004 9.5 0.0 41 62 162 183 145 219 0.78 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_66 - 503 AAA_19 PF13245.1 76 6.2e-06 18.9 0.0 1 1 1.6e-07 1.6e-05 17.6 0.0 5 36 223 255 219 272 0.72 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_20 - 1015 AAA_10 PF12846.2 304 1.9e-31 102.5 0.0 1 1 2.1e-32 5.3e-31 101.0 0.0 8 303 502 898 498 899 0.92 # 18418 # 21462 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.580 1_4 - 768 AAA_10 PF12846.2 304 8.9e-07 21.5 0.2 1 1 7e-08 1.8e-06 20.5 0.2 2 292 137 506 136 516 0.68 # 3736 # 6039 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 2_8 - 383 AAA_10 PF12846.2 304 1.5e-05 17.5 0.2 1 2 1.5e-05 0.00038 12.9 0.1 3 22 159 178 157 185 0.85 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_8 - 383 AAA_10 PF12846.2 304 1.5e-05 17.5 0.2 2 2 0.013 0.33 3.2 0.0 181 247 259 347 174 350 0.58 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_66 - 503 AAA_10 PF12846.2 304 0.00058 12.3 0.0 1 1 3.3e-05 0.00086 11.7 0.0 4 28 232 256 229 362 0.77 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_11 - 283 Methyltransf_27 PF13708.1 194 1.2e-67 220.2 0.0 1 1 1.6e-69 1.6e-67 219.7 0.0 2 194 85 278 84 278 0.96 # 11042 # 11890 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_4 - 768 TrwB_AAD_bind PF10412.4 386 5.5e-07 21.4 0.2 1 2 0.00021 0.021 6.3 0.0 11 32 132 153 126 164 0.80 # 3736 # 6039 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_4 - 768 TrwB_AAD_bind PF10412.4 386 5.5e-07 21.4 0.2 2 2 2.5e-06 0.00026 12.6 0.1 260 332 452 525 435 578 0.75 # 3736 # 6039 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_31 - 228 MethyltransfD12 PF02086.10 260 0.00044 12.7 0.0 1 2 0.015 1.6 1.0 0.0 175 188 18 31 8 90 0.81 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_31 - 228 MethyltransfD12 PF02086.10 260 0.00044 12.7 0.0 2 2 4e-05 0.0041 9.5 0.0 20 46 163 189 148 197 0.78 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 2_8 - 383 RNA_helicase PF00910.17 107 5.5e-05 16.3 0.0 1 1 1e-06 0.00011 15.4 0.0 2 33 161 190 160 201 0.82 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_58 - 214 TIGR00922 TIGR00922 172 0.0003 13.3 0.0 1 1 3.6e-06 0.00037 13.0 0.0 54 104 105 155 56 176 0.87 # 46576 # 47217 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 2_8 - 383 NACHT PF05729.7 166 0.00067 12.3 0.0 1 1 1.4e-05 0.0014 11.2 0.0 4 30 161 187 159 193 0.82 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_8 - 383 AAA_25 PF13481.1 194 8.7e-06 18.2 0.0 1 1 2.8e-07 1.5e-05 17.4 0.0 21 55 146 179 127 219 0.78 # 6461 # 7609 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_66 - 503 AAA_25 PF13481.1 194 0.00022 13.6 0.0 1 1 1.1e-05 0.00058 12.2 0.0 20 64 215 260 202 276 0.78 # 54232 # 55740 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_31 - 228 Methyltransf_15 PF09445.5 164 0.00082 11.9 0.0 1 2 0.045 4.6 -0.3 0.0 53 79 4 29 2 32 0.90 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_31 - 228 Methyltransf_15 PF09445.5 164 0.00082 11.9 0.0 2 2 4.3e-05 0.0045 9.5 0.0 3 31 166 194 164 208 0.86 # 25165 # 25848 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2bbf8fe3-8911-4f08-a8df-32558111f433 # Target file: checkm_output/bins/pm1639/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1639/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2bbf8fe3-8911-4f08-a8df-32558111f433 checkm_output/bins/pm1639/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:59:01 2020 # [ok]