# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_1 - 138 ABC_ATPase PF09818.4 448 0.00022 12.2 0.0 1 1 4.2e-06 0.00028 11.8 0.0 243 265 35 57 13 62 0.82 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 2_26 - 389 MipZ PF09140.6 261 2.9e-06 18.8 0.4 1 2 3.5e-06 0.00024 12.6 0.0 2 47 108 153 107 157 0.87 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 2_26 - 389 MipZ PF09140.6 261 2.9e-06 18.8 0.4 2 2 0.0011 0.075 4.4 0.0 88 134 224 270 197 292 0.84 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 2_21 - 176 SSB PF00436.20 104 2.2e-41 132.3 0.4 1 1 4.5e-43 3e-41 131.9 0.4 1 101 6 109 6 112 0.96 # 12075 # 12602 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_8 - 511 DUF87 PF01935.12 229 0.0004 12.5 0.2 1 2 0.074 4.9 -0.8 0.1 143 214 76 146 33 157 0.61 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_8 - 511 DUF87 PF01935.12 229 0.0004 12.5 0.2 2 2 2.6e-05 0.0017 10.5 0.0 28 45 249 266 247 276 0.89 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_8 - 511 AAA_22 PF13401.1 131 4.2e-05 16.0 0.1 1 1 8.7e-06 0.0002 13.9 0.0 6 35 246 275 243 329 0.80 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 4_1 - 378 AAA_22 PF13401.1 131 0.00021 13.8 0.2 1 1 2.2e-05 0.0005 12.6 0.2 69 121 68 124 33 134 0.75 # 1 # 1134 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 3_1 - 138 AAA_22 PF13401.1 131 0.00052 12.5 0.0 1 1 3.2e-05 0.00071 12.1 0.0 6 28 38 60 33 95 0.82 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 ATP_bind_1 PF03029.12 238 0.00036 12.4 0.0 1 1 3e-05 0.00099 11.0 0.0 1 23 249 271 249 276 0.90 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 ATP_bind_1 PF03029.12 238 0.00062 11.6 0.0 1 1 2.6e-05 0.00086 11.2 0.0 1 21 41 61 41 67 0.86 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 3_1 - 138 MutS_V PF00488.16 235 0.0002 13.1 0.1 1 1 3.7e-06 0.00024 12.8 0.1 34 67 29 60 3 64 0.76 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 3_1 - 138 AAA_15 PF13175.1 415 2.5e-09 28.9 0.1 1 1 7.4e-11 2.5e-09 28.9 0.1 2 50 15 64 14 124 0.78 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 4_1 - 378 AAA_15 PF13175.1 415 6.4e-09 27.6 9.2 1 1 1.9e-10 6.4e-09 27.6 9.2 286 410 8 127 2 131 0.75 # 1 # 1134 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_8 - 511 AAA_17 PF13207.1 121 8.1e-05 15.8 0.1 1 1 1.6e-05 0.00054 13.2 0.0 1 21 246 266 246 318 0.79 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 AAA_17 PF13207.1 121 0.00012 15.3 0.0 1 1 5.9e-06 0.0002 14.6 0.0 3 25 40 66 38 99 0.84 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 4_1 - 378 AAA_21 PF13304.1 303 2.7e-17 55.9 3.0 1 1 8e-19 2.7e-17 55.9 3.0 219 297 35 127 2 131 0.74 # 1 # 1134 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 3_1 - 138 AAA_21 PF13304.1 303 8.2e-09 28.1 0.0 1 1 3.1e-10 1e-08 27.8 0.0 1 62 38 106 38 118 0.74 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 2_6 - 122 CTP_transf_2 PF01467.21 157 0.00043 12.7 0.0 1 1 6.8e-06 0.00045 12.6 0.0 31 67 6 41 1 98 0.65 # 1887 # 2252 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 2_26 - 389 ArsA_ATPase PF02374.10 305 1.2e-06 20.1 0.4 1 2 1.7e-06 0.00011 13.6 0.1 9 36 115 142 109 151 0.89 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 2_26 - 389 ArsA_ATPase PF02374.10 305 1.2e-06 20.1 0.4 2 2 0.0011 0.074 4.3 0.0 123 136 231 244 221 251 0.84 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_8 - 511 T2SE PF00437.15 272 8.2e-49 158.2 0.0 1 1 3.6e-50 1.2e-48 157.7 0.0 5 259 109 376 105 388 0.89 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 T2SE PF00437.15 272 0.00062 11.0 0.1 1 1 2.3e-05 0.00078 10.7 0.1 116 150 27 58 3 66 0.80 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 3_1 - 138 G-alpha PF00503.15 389 0.00036 11.6 0.0 1 1 7e-06 0.00047 11.2 0.0 63 85 41 63 29 78 0.89 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_17 - 148 Ribosomal_S19 PF00203.16 81 0.00015 13.8 0.0 1 1 3.8e-06 0.00026 13.0 0.0 31 61 73 104 65 130 0.88 # 12613 # 13056 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_8 - 511 Zeta_toxin PF06414.7 201 0.00018 13.0 0.0 1 1 5.2e-06 0.00035 12.0 0.0 18 41 246 269 237 279 0.88 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 SMC_N PF02463.14 220 1.9e-09 29.4 0.1 1 1 7.8e-11 2.6e-09 28.9 0.1 2 45 14 57 13 63 0.92 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 4_1 - 378 SMC_N PF02463.14 220 6.8e-08 24.3 0.7 1 1 3.1e-09 1.1e-07 23.7 0.7 135 208 44 138 2 148 0.67 # 1 # 1134 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 2_26 - 389 VirC1 PF07015.6 231 4.4e-05 14.9 0.1 1 2 0.00028 0.019 6.3 0.0 4 42 109 147 107 154 0.91 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 2_26 - 389 VirC1 PF07015.6 231 4.4e-05 14.9 0.1 2 2 0.0003 0.02 6.2 0.1 84 139 235 290 222 312 0.77 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_8 - 511 Arch_ATPase PF01637.13 234 3.5e-05 15.9 0.0 1 1 1.9e-06 6.4e-05 15.0 0.0 6 44 231 268 230 298 0.84 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 Arch_ATPase PF01637.13 234 4.4e-05 15.6 0.0 1 1 2.6e-06 8.9e-05 14.6 0.0 7 42 24 58 19 77 0.87 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 3_1 - 138 AAA_16 PF13191.1 185 0.00027 13.3 0.0 1 1 6e-06 0.0004 12.7 0.0 27 47 39 59 34 69 0.86 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 3_1 - 138 AAA_23 PF13476.1 202 4.5e-12 39.0 0.0 1 1 8e-14 5.4e-12 38.8 0.0 1 84 16 112 16 132 0.67 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 AAA_18 PF13238.1 129 0.00011 14.9 0.3 1 1 8.7e-06 0.00058 12.5 0.0 2 20 248 266 248 321 0.82 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 AAA_13 PF13166.1 712 0.0005 10.9 0.0 1 1 7.5e-06 0.0005 10.9 0.0 18 39 38 59 24 101 0.86 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 2_26 - 389 CbiA PF01656.18 195 6.7e-37 119.1 0.0 1 1 1.3e-38 8.9e-37 118.7 0.0 2 194 110 339 109 340 0.80 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_8 - 511 KaiC PF06745.8 227 3e-05 15.5 0.0 1 1 9.2e-07 6.2e-05 14.5 0.0 21 63 246 289 241 300 0.81 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 AAA_29 PF13555.1 62 2.7e-10 32.0 0.0 1 1 1.3e-11 4.2e-10 31.4 0.0 14 51 27 64 14 67 0.82 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 AAA_29 PF13555.1 62 4.6e-05 15.3 0.0 1 1 4.7e-06 0.00016 13.6 0.0 21 40 243 261 232 268 0.81 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 4_1 - 378 AAA PF00004.24 132 0.00018 14.1 0.4 1 1 6.3e-06 0.00043 12.9 0.2 39 116 67 135 33 148 0.78 # 1 # 1134 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 3_1 - 138 DUF258 PF03193.11 161 0.00012 13.7 0.0 1 1 1.8e-06 0.00012 13.7 0.0 18 57 17 58 2 113 0.83 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 2_26 - 389 AAA_31 PF13614.1 157 6.6e-10 31.5 0.0 1 2 1.4e-08 9.2e-07 21.3 0.0 2 49 108 155 107 195 0.91 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 2_26 - 389 AAA_31 PF13614.1 157 6.6e-10 31.5 0.0 2 2 0.00018 0.012 7.9 0.1 110 152 227 268 223 272 0.84 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 3_1 - 138 AAA_30 PF13604.1 196 8.7e-05 14.5 0.0 1 1 3.2e-06 0.00011 14.2 0.0 12 44 30 62 26 83 0.86 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 AAA_30 PF13604.1 196 0.00075 11.4 0.0 1 1 4.1e-05 0.0014 10.6 0.0 10 43 236 269 232 281 0.88 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_8 - 511 FtsK_SpoIIIE PF01580.13 205 3.4e-05 15.7 0.0 1 1 1.7e-06 5.7e-05 15.0 0.0 42 59 248 265 228 269 0.91 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 FtsK_SpoIIIE PF01580.13 205 3.5e-05 15.7 0.0 1 1 1.5e-06 5.2e-05 15.1 0.0 36 58 34 56 14 62 0.81 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 3_1 - 138 ABC_tran PF00005.22 137 2.4e-10 33.2 0.0 1 1 1e-11 3.3e-10 32.7 0.0 8 40 33 65 29 90 0.92 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 ABC_tran PF00005.22 137 0.00034 13.3 0.0 1 1 2.2e-05 0.00075 12.2 0.0 13 33 246 266 241 288 0.88 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 AAA_19 PF13245.1 76 1.8e-06 20.1 0.0 1 1 3.9e-08 2.6e-06 19.5 0.0 9 37 35 62 29 77 0.85 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 AAA_10 PF12846.2 304 6.4e-06 18.1 0.0 1 1 3e-07 1e-05 17.4 0.0 4 29 247 272 244 298 0.85 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 AAA_10 PF12846.2 304 0.00017 13.4 0.0 1 1 6.5e-06 0.00022 13.0 0.0 3 22 38 57 36 67 0.86 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 TrwB_AAD_bind PF10412.4 386 2.1e-05 15.6 0.0 1 1 4.7e-07 3.2e-05 15.0 0.0 19 40 248 269 232 280 0.89 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 NACHT PF05729.7 166 2.2e-05 16.5 0.0 1 1 4.4e-07 2.9e-05 16.1 0.0 3 41 39 78 37 93 0.80 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 3_1 - 138 AAA_25 PF13481.1 194 3.3e-05 15.7 0.0 1 1 6.3e-07 4.2e-05 15.3 0.0 30 64 33 67 20 84 0.80 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 Herpes_Helicase PF02689.9 819 0.00012 12.3 0.0 1 1 2.8e-06 0.00019 11.5 0.0 57 83 241 267 219 270 0.80 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/83529f7a-ce90-4135-8aaa-1a383ffb02af # Target file: checkm_output/bins/pm1638/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1638/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/83529f7a-ce90-4135-8aaa-1a383ffb02af checkm_output/bins/pm1638/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:58 2020 # [ok]