# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_5 - 188 Methyltransf_12 PF08242.7 99 6.1e-05 16.1 0.0 1 1 1.2e-06 9.4e-05 15.5 0.0 1 99 55 144 55 144 0.84 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_5 - 188 RrnaAD PF00398.15 262 3.3e-09 28.6 0.0 1 1 5.3e-11 4.2e-09 28.3 0.0 9 113 29 128 24 149 0.89 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_2 - 260 IstB_IS21 PF01695.12 178 3.6e-73 237.3 0.1 1 2 0.049 3.9 -0.6 0.0 64 97 25 57 24 61 0.64 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 IstB_IS21 PF01695.12 178 3.6e-73 237.3 0.1 2 2 9.8e-75 7.7e-73 236.2 0.1 1 178 56 235 56 235 0.98 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_7 - 176 SSB PF00436.20 104 5.3e-41 131.4 0.3 1 1 9.1e-43 7.2e-41 130.9 0.3 1 101 6 109 6 112 0.95 # 3765 # 4292 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_5 - 188 Methyltransf_18 PF12847.2 112 6e-10 32.3 0.0 1 1 1.5e-11 1.2e-09 31.3 0.0 4 109 53 146 50 148 0.89 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_16 - 1757 UvrD_C_2 PF13538.1 104 2.6e-08 26.6 0.7 1 2 0.0034 0.27 4.1 0.0 6 44 1227 1265 1223 1294 0.75 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_16 - 1757 UvrD_C_2 PF13538.1 104 2.6e-08 26.6 0.7 2 2 5.2e-08 4.1e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_38 - 877 DUF87 PF01935.12 229 2.3e-07 23.4 0.0 1 1 1.7e-08 6.8e-07 21.9 0.0 26 221 483 669 469 677 0.75 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_43 - 107 DUF87 PF01935.12 229 0.00039 12.8 0.0 1 1 1.5e-05 0.00061 12.2 0.0 25 50 74 99 72 103 0.91 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_2 - 260 AAA_22 PF13401.1 131 1.2e-06 21.3 0.2 1 2 4.5e-05 0.0018 11.0 0.0 5 21 103 119 99 131 0.83 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_22 PF13401.1 131 1.2e-06 21.3 0.2 2 2 0.00073 0.029 7.1 0.0 88 103 154 181 126 203 0.66 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_43 - 107 AAA_22 PF13401.1 131 0.00082 12.1 0.0 1 1 3.4e-05 0.0014 11.4 0.0 3 27 71 95 66 103 0.86 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_17 - 739 AAA_17 PF13207.1 121 0.00026 14.4 0.0 1 1 1.2e-05 0.00095 12.6 0.0 3 27 189 217 187 262 0.68 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_38 - 877 MobB PF03205.9 140 0.0002 13.6 0.2 1 2 2.7e-05 0.0021 10.3 0.0 4 37 484 516 482 524 0.79 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_38 - 877 MobB PF03205.9 140 0.0002 13.6 0.2 2 2 0.034 2.7 0.3 0.0 25 64 696 733 691 745 0.86 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_2 - 260 PhoH PF02562.11 205 8.3e-08 24.2 0.1 1 1 3.6e-09 2.8e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AFG1_ATPase PF03969.11 362 5.7e-05 14.6 0.2 1 1 2.8e-06 0.00022 12.6 0.2 63 216 103 254 43 259 0.72 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_43 - 107 Zeta_toxin PF06414.7 201 0.00025 12.7 0.1 1 1 1e-05 0.0004 12.1 0.1 14 40 70 96 59 102 0.82 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_17 - 739 Zeta_toxin PF06414.7 201 0.00062 11.4 0.0 1 1 7e-05 0.0028 9.3 0.0 21 49 190 219 182 236 0.85 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 260 Arch_ATPase PF01637.13 234 0.00074 11.8 0.1 1 2 3.4e-05 0.0027 9.9 0.0 8 37 90 119 87 140 0.79 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 Arch_ATPase PF01637.13 234 0.00074 11.8 0.1 2 2 0.071 5.6 -0.9 0.0 121 150 167 192 144 203 0.68 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_17 - 739 AAA_16 PF13191.1 185 3.4e-06 19.7 0.0 1 1 6.1e-07 1.6e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 260 AAA_16 PF13191.1 185 5.2e-05 15.9 1.1 1 1 8.9e-06 0.00023 13.7 0.1 21 41 99 119 86 151 0.78 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_43 - 107 AAA_16 PF13191.1 185 7.1e-05 15.4 0.0 1 1 7.3e-06 0.00019 14.0 0.0 22 51 70 99 64 104 0.90 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_2 - 260 AAA_14 PF13173.1 128 9.4e-07 21.4 0.0 1 1 2.3e-08 1.8e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_29 PF13555.1 62 0.00059 12.0 0.0 1 1 1.4e-05 0.0011 11.1 0.0 19 59 98 139 89 141 0.72 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA PF00004.24 132 1.5e-07 24.3 0.0 1 1 3.2e-09 2.5e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 Bac_DnaA PF00308.13 219 8.4e-10 31.2 0.0 1 1 1.6e-11 1.2e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 Sigma54_activat PF00158.21 168 0.00011 14.3 0.1 1 1 8.2e-06 0.00065 11.8 0.1 18 53 98 133 82 198 0.72 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_5 - 188 N6_Mtase PF02384.11 311 0.00012 13.8 0.0 1 2 1.7e-05 0.0013 10.3 0.0 28 64 32 68 21 83 0.88 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_5 - 188 N6_Mtase PF02384.11 311 0.00012 13.8 0.0 2 2 0.018 1.4 0.4 0.0 127 137 114 124 103 134 0.82 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_2 - 260 DUF258 PF03193.11 161 1e-05 17.3 0.0 1 1 2e-07 1.5e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_17 - 739 TraG-D_C PF12696.2 128 6.2e-21 67.2 0.0 1 1 1.4e-22 1.1e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 260 NTPase_1 PF03266.10 168 0.00018 13.8 0.1 1 2 0.0016 0.13 4.5 0.1 2 30 105 133 104 153 0.83 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 NTPase_1 PF03266.10 168 0.00018 13.8 0.1 2 2 0.00025 0.019 7.2 0.0 88 112 157 181 144 204 0.72 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_5 - 188 Methyltransf_26 PF13659.1 117 2.5e-13 42.7 0.0 1 1 5.9e-15 4.7e-13 41.8 0.0 2 114 52 147 51 150 0.91 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_16 - 1757 AAA_30 PF13604.1 196 1.9e-44 144.1 12.9 1 3 0.083 3.3 -0.2 0.0 41 86 223 269 219 281 0.81 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_16 - 1757 AAA_30 PF13604.1 196 1.9e-44 144.1 12.9 2 3 2.3e-05 0.00089 11.4 3.5 7 147 420 552 416 562 0.84 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_16 - 1757 AAA_30 PF13604.1 196 1.9e-44 144.1 12.9 3 3 1.6e-43 6.2e-42 135.9 0.8 1 186 968 1156 968 1160 0.95 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_17 - 739 AAA_30 PF13604.1 196 0.00047 12.3 0.0 1 1 2.6e-05 0.001 11.2 0.0 21 57 188 224 180 230 0.85 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_43 - 107 FtsK_SpoIIIE PF01580.13 205 3.7e-06 19.1 0.0 1 1 1.1e-07 4.4e-06 18.8 0.0 20 66 52 100 35 103 0.79 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_38 - 877 FtsK_SpoIIIE PF01580.13 205 1.1e-05 17.5 0.1 1 2 4.1e-06 0.00016 13.7 0.0 39 63 477 505 464 508 0.84 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_38 - 877 FtsK_SpoIIIE PF01580.13 205 1.1e-05 17.5 0.1 2 2 0.03 1.2 1.1 0.0 75 166 531 626 530 669 0.83 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 2_5 - 188 MTS PF05175.9 170 1.9e-09 29.7 0.0 1 1 3.3e-11 2.6e-09 29.2 0.0 31 141 50 149 41 165 0.84 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_5 - 188 Methyltrans_SAM PF10672.4 286 0.00078 10.9 0.0 1 1 1.5e-05 0.0011 10.3 0.0 196 261 113 173 100 177 0.77 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_2 - 260 ABC_tran PF00005.22 137 0.00012 15.0 0.3 1 2 1.2e-05 0.00095 12.1 0.0 8 30 99 121 93 136 0.86 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 ABC_tran PF00005.22 137 0.00012 15.0 0.3 2 2 0.051 4 0.3 0.0 107 134 143 172 126 174 0.74 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 RuvB_N PF05496.7 234 0.00029 12.5 0.0 1 1 6.5e-06 0.00051 11.7 0.0 50 119 102 182 92 190 0.65 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_16 - 1757 AAA_19 PF13245.1 76 1.2e-07 24.0 1.8 1 1 1e-08 4.1e-07 22.3 0.4 5 76 979 1047 974 1047 0.74 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_2 - 260 AAA_19 PF13245.1 76 0.00033 13.0 0.0 1 1 2.1e-05 0.00083 11.7 0.0 10 37 103 129 96 154 0.81 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_38 - 877 AAA_10 PF12846.2 304 1.7e-49 161.4 0.0 1 1 1.5e-50 3e-49 160.6 0.0 1 294 480 769 480 775 0.89 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_17 - 739 AAA_10 PF12846.2 304 1.1e-10 33.9 0.0 1 1 1e-10 2e-09 29.8 0.0 3 296 187 494 186 500 0.68 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 260 AAA_10 PF12846.2 304 6.2e-06 18.3 0.7 1 2 3.8e-06 7.5e-05 14.8 0.1 1 33 102 134 102 171 0.89 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_10 PF12846.2 304 6.2e-06 18.3 0.7 2 2 0.097 1.9 0.3 0.0 202 247 142 192 134 202 0.68 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_43 - 107 AAA_10 PF12846.2 304 4.6e-05 15.5 0.0 1 2 0.011 0.21 3.5 0.0 273 289 25 41 10 54 0.78 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_43 - 107 AAA_10 PF12846.2 304 4.6e-05 15.5 0.0 2 2 8.8e-05 0.0017 10.3 0.0 2 24 73 95 72 100 0.86 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_2 - 260 ResIII PF04851.10 184 0.00029 13.3 0.0 1 2 6.9e-05 0.0054 9.1 0.0 8 50 89 127 49 135 0.78 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 ResIII PF04851.10 184 0.00029 13.3 0.0 2 2 0.0088 0.69 2.3 0.0 112 163 131 181 127 202 0.72 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_5 - 188 Methyltransf_31 PF13847.1 152 3e-06 19.5 0.0 1 1 4.8e-08 3.8e-06 19.1 0.0 5 119 52 162 48 183 0.83 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_16 - 1757 Viral_helicase1 PF01443.13 234 0.00079 11.5 0.2 1 2 0.00045 0.036 6.1 0.0 1 22 988 1009 988 1122 0.80 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_16 - 1757 Viral_helicase1 PF01443.13 234 0.00079 11.5 0.2 2 2 0.0062 0.49 2.4 0.0 171 234 1387 1447 1336 1447 0.63 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_17 - 739 TrwB_AAD_bind PF10412.4 386 2.1e-150 493.1 0.0 1 1 9.7e-152 2.5e-150 492.9 0.0 2 386 172 561 171 561 0.99 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_38 - 877 TrwB_AAD_bind PF10412.4 386 3.2e-07 21.8 0.1 1 2 7.2e-08 1.9e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_38 - 877 TrwB_AAD_bind PF10412.4 386 3.2e-07 21.8 0.1 2 2 0.061 1.6 -0.3 0.0 261 317 714 770 686 773 0.92 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_43 - 107 TrwB_AAD_bind PF10412.4 386 0.00019 12.6 0.0 1 2 0.056 1.5 -0.2 0.0 295 331 25 61 17 68 0.71 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_43 - 107 TrwB_AAD_bind PF10412.4 386 0.00019 12.6 0.0 2 2 1.9e-05 0.0005 11.3 0.0 5 42 62 99 58 103 0.88 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_16 - 1757 AAA_11 PF13086.1 236 0.00044 12.4 4.3 1 1 6.7e-06 0.00053 12.1 0.0 2 74 969 1038 968 1060 0.80 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_17 - 739 T4SS-DNA_transf PF02534.9 469 3.7e-10 31.5 0.0 1 1 2.1e-11 8.1e-10 30.3 0.0 250 362 362 477 198 501 0.76 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_38 - 877 T4SS-DNA_transf PF02534.9 469 0.00013 13.1 0.0 1 2 0.0026 0.1 3.6 0.0 105 182 534 605 471 623 0.85 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_38 - 877 T4SS-DNA_transf PF02534.9 469 0.00013 13.1 0.0 2 2 0.00021 0.0085 7.2 0.0 319 378 712 770 663 772 0.90 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 2_5 - 188 TIGR00755 TIGR00755 256 9.7e-09 27.1 0.0 1 1 1.6e-10 1.3e-08 26.7 0.0 8 105 29 123 25 134 0.90 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_43 - 107 Pox_A32 PF04665.7 241 0.00014 13.8 0.0 1 2 0.073 2.9 -0.4 0.0 3 28 42 66 41 70 0.72 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_43 - 107 Pox_A32 PF04665.7 241 0.00014 13.8 0.0 2 2 8.3e-06 0.00033 12.6 0.0 7 42 66 101 60 104 0.89 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_38 - 877 Pox_A32 PF04665.7 241 0.00073 11.4 0.0 1 1 4.6e-05 0.0018 10.1 0.0 7 38 474 505 470 520 0.85 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_43 - 107 RNA_helicase PF00910.17 107 0.0001 15.1 0.0 1 1 3.2e-06 0.00025 13.8 0.0 1 29 75 103 75 106 0.91 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_2 - 260 AAA_25 PF13481.1 194 2e-05 16.6 0.0 1 1 4.1e-07 3.3e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_28 PF13521.1 163 0.00094 11.7 1.8 1 2 0.063 5 -0.4 0.1 84 110 35 63 3 82 0.67 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_28 PF13521.1 163 0.00094 11.7 1.8 2 2 3e-05 0.0023 10.4 0.2 1 43 104 151 104 172 0.70 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_5 PF07728.9 139 2.3e-05 16.7 0.3 1 2 3.6e-06 0.00029 13.2 0.2 1 74 104 173 104 180 0.72 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_5 PF07728.9 139 2.3e-05 16.7 0.3 2 2 0.053 4.2 -0.3 0.0 90 123 225 258 218 259 0.63 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2f241e0f-5ab3-45c8-ba78-c542604180cc # Target file: checkm_output/bins/pm1637/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1637/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2f241e0f-5ab3-45c8-ba78-c542604180cc checkm_output/bins/pm1637/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:59 2020 # [ok]