# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 7_4 - 259 IstB_IS21 PF01695.12 178 4.4e-73 237.4 0.1 1 2 0.049 5.2 -0.6 0.0 64 97 24 56 23 60 0.64 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 IstB_IS21 PF01695.12 178 4.4e-73 237.4 0.1 2 2 9e-75 9.5e-73 236.3 0.1 1 178 55 234 55 234 0.98 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 AAA_22 PF13401.1 131 1.6e-06 21.3 0.2 1 2 4.1e-05 0.0022 11.1 0.0 5 21 102 118 98 134 0.83 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 AAA_22 PF13401.1 131 1.6e-06 21.3 0.2 2 2 0.00078 0.041 7.0 0.0 88 103 153 180 128 202 0.66 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_6 - 209 AAA_22 PF13401.1 131 7e-06 19.2 1.1 1 1 1.6e-06 8.4e-05 15.7 1.1 3 114 26 185 24 199 0.55 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 MutS_V PF00488.16 235 1.6e-05 17.4 0.0 1 1 2e-07 2.1e-05 17.0 0.0 24 67 8 51 4 122 0.81 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 AAA_15 PF13175.1 415 9.4e-12 37.6 2.1 1 2 5.1e-07 5.4e-05 15.3 3.3 17 57 21 91 2 128 0.59 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 AAA_15 PF13175.1 415 9.4e-12 37.6 2.1 2 2 3.5e-08 3.7e-06 19.1 0.0 365 415 153 199 137 199 0.89 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 AAA_17 PF13207.1 121 5.4e-05 17.0 1.1 1 1 8.8e-07 9.4e-05 16.2 1.0 2 19 30 47 29 144 0.77 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 AAA_21 PF13304.1 303 2.7e-19 63.1 2.2 1 1 1.7e-19 1.8e-17 57.1 2.2 1 302 29 199 29 200 0.79 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 7_4 - 259 PhoH PF02562.11 205 1.1e-07 24.2 0.1 1 1 4e-09 4.2e-07 22.3 0.0 11 48 93 130 82 141 0.80 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 AFG1_ATPase PF03969.11 362 0.00015 13.6 0.2 1 1 5e-06 0.00053 11.8 0.2 63 215 102 252 42 258 0.70 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_6 - 209 T2SE PF00437.15 272 0.00011 14.2 0.0 1 1 2.2e-06 0.00023 13.1 0.0 123 148 22 47 7 59 0.85 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 2_5 - 86 Cytidylate_kin2 PF13189.1 179 0.00016 14.6 0.3 1 1 1.8e-06 0.00019 14.4 0.3 112 155 40 83 30 85 0.85 # 2110 # 2367 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 4_6 - 209 SMC_N PF02463.14 220 2.4e-09 29.7 3.5 1 1 8e-10 8.4e-08 24.6 3.5 23 207 26 204 14 208 0.67 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 Arch_ATPase PF01637.13 234 7.3e-06 18.8 1.8 1 1 1.6e-06 8.7e-05 15.3 1.8 18 150 25 185 17 194 0.63 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 7_4 - 259 Arch_ATPase PF01637.13 234 0.00099 11.8 0.1 1 1 6.8e-05 0.0036 10.0 0.0 8 37 89 118 86 139 0.79 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_6 - 209 AAA_16 PF13191.1 185 1.9e-05 17.7 0.1 1 1 5.4e-07 2.9e-05 17.1 0.1 22 57 25 61 17 161 0.79 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 7_4 - 259 AAA_16 PF13191.1 185 0.00015 14.8 2.2 1 1 5.2e-06 0.00027 13.9 0.1 16 41 96 118 83 159 0.78 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_6 - 209 AAA_23 PF13476.1 202 0.00011 15.6 8.2 1 1 4e-06 0.00042 13.6 8.2 12 45 19 53 10 204 0.71 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 AAA_18 PF13238.1 129 3.8e-08 26.7 0.6 1 1 1.4e-07 1.5e-05 18.3 0.6 1 77 30 116 30 208 0.76 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 AAA_13 PF13166.1 712 8.7e-05 14.1 0.8 1 2 0.0015 0.15 3.3 1.0 17 46 28 56 16 116 0.73 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 AAA_13 PF13166.1 712 8.7e-05 14.1 0.8 2 2 3.7e-05 0.0039 8.6 0.0 508 573 144 198 127 204 0.82 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 7_4 - 259 AAA_14 PF13173.1 128 1.2e-06 21.5 0.0 1 1 3.8e-08 2e-06 20.7 0.0 2 96 101 202 100 247 0.73 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_6 - 209 AAA_14 PF13173.1 128 0.00022 14.2 1.0 1 1 8.1e-06 0.00043 13.2 0.4 2 22 27 47 26 125 0.67 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 AAA_29 PF13555.1 62 6.8e-07 21.8 0.1 1 1 2.6e-08 1.4e-06 20.8 0.1 19 41 24 45 17 62 0.80 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 7_4 - 259 AAA_29 PF13555.1 62 0.00079 12.0 0.0 1 1 2.9e-05 0.0015 11.1 0.0 19 59 97 138 88 140 0.72 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 AAA PF00004.24 132 1.9e-07 24.3 0.0 1 1 3.1e-09 3.3e-07 23.6 0.0 1 74 104 179 104 213 0.77 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 Bac_DnaA PF00308.13 219 1.1e-09 31.2 0.0 1 1 1.6e-11 1.7e-09 30.6 0.0 37 136 104 201 74 206 0.85 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_10 - 176 Ribosomal_L20 PF00453.13 108 0.00019 14.3 0.1 1 1 3.6e-06 0.00039 13.4 0.1 44 98 79 134 58 140 0.85 # 8232 # 8759 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 7_4 - 259 Sigma54_activat PF00158.21 168 0.00014 14.3 0.1 1 1 8.1e-06 0.00086 11.8 0.1 18 53 97 132 81 197 0.72 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_6 - 209 MMR_HSR1 PF01926.18 116 0.00036 13.5 1.7 1 1 7.1e-06 0.00076 12.5 1.7 2 20 30 48 29 203 0.69 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 DUF258 PF03193.11 161 1.4e-06 20.6 0.0 1 1 4.3e-08 2.3e-06 19.9 0.0 32 55 23 47 6 73 0.85 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 7_4 - 259 DUF258 PF03193.11 161 1.4e-05 17.3 0.0 1 1 3.9e-07 2.1e-05 16.8 0.0 21 78 87 156 69 191 0.71 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 NTPase_1 PF03266.10 168 0.00025 13.8 0.1 1 2 0.0016 0.17 4.5 0.1 2 30 104 132 103 152 0.83 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 NTPase_1 PF03266.10 168 0.00025 13.8 0.1 2 2 0.00024 0.026 7.2 0.0 88 112 156 180 143 203 0.72 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_6 - 209 AAA_30 PF13604.1 196 9.8e-05 15.0 0.0 1 1 2.1e-06 0.00022 13.8 0.0 14 37 23 46 20 58 0.89 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 FtsK_SpoIIIE PF01580.13 205 0.0006 12.3 0.0 1 1 1.1e-05 0.0011 11.4 0.0 34 56 23 45 9 47 0.84 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 ABC_tran PF00005.22 137 6.1e-31 100.5 0.0 1 1 1.6e-32 8.5e-31 100.1 0.0 2 137 18 165 17 165 0.89 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 7_4 - 259 ABC_tran PF00005.22 137 0.00016 15.0 0.3 1 1 2.4e-05 0.0013 12.1 0.0 8 30 98 120 92 135 0.86 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 RuvB_N PF05496.7 234 0.00039 12.5 0.0 1 1 6.4e-06 0.00068 11.7 0.0 50 119 101 181 91 189 0.65 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_6 - 209 AAA_19 PF13245.1 76 5.1e-05 16.0 0.1 1 1 2.6e-06 0.00014 14.7 0.1 9 32 26 48 21 52 0.87 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 7_4 - 259 AAA_19 PF13245.1 76 0.00045 13.0 0.0 1 1 2.1e-05 0.0011 11.7 0.0 10 37 102 128 95 153 0.81 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 AAA_10 PF12846.2 304 8e-06 18.4 0.7 1 3 0.056 3 0.1 0.0 127 169 37 81 8 94 0.68 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 AAA_10 PF12846.2 304 8e-06 18.4 0.7 2 3 1.9e-06 0.0001 14.8 0.1 1 33 101 133 101 170 0.89 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 AAA_10 PF12846.2 304 8e-06 18.4 0.7 3 3 0.048 2.6 0.3 0.0 202 247 141 191 133 201 0.68 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_6 - 209 AAA_10 PF12846.2 304 3.1e-05 16.5 0.7 1 2 3.9e-06 0.00021 13.7 0.6 3 22 29 48 27 151 0.88 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 AAA_10 PF12846.2 304 3.1e-05 16.5 0.7 2 2 0.041 2.2 0.6 0.0 219 266 153 199 133 206 0.73 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 SbcCD_C PF13558.1 90 0.00013 14.9 0.1 1 1 7.8e-06 0.00082 12.3 0.1 33 88 137 179 130 181 0.79 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 7_4 - 259 ResIII PF04851.10 184 0.00038 13.3 0.0 1 2 6.9e-05 0.0073 9.1 0.0 8 50 88 126 49 134 0.78 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 ResIII PF04851.10 184 0.00038 13.3 0.0 2 2 0.0076 0.81 2.4 0.0 112 163 130 180 124 202 0.72 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_6 - 209 Zot PF05707.7 193 0.0012 11.3 1.0 1 2 0.093 9.8 -1.5 0.0 18 43 2 26 1 31 0.79 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 Zot PF05707.7 193 0.0012 11.3 1.0 2 2 0.00017 0.018 7.5 0.4 82 134 157 204 28 207 0.65 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 1_21 - 289 Methyltransf_27 PF13708.1 194 7.2e-67 217.6 0.0 1 1 9.3e-69 9.9e-67 217.2 0.0 2 194 91 284 90 284 0.96 # 11505 # 12371 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.506 4_6 - 209 ArgK PF03308.11 267 0.00071 11.3 0.0 1 1 1e-05 0.0011 10.7 0.0 18 50 16 48 4 59 0.77 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 7_4 - 259 AAA_25 PF13481.1 194 2.7e-05 16.6 0.0 1 1 8.2e-07 4.4e-05 15.9 0.0 22 58 89 126 70 182 0.79 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_6 - 209 AAA_25 PF13481.1 194 4e-05 16.0 0.0 1 1 2.4e-06 0.00013 14.4 0.0 20 50 11 44 4 78 0.75 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 4_6 - 209 AAA_28 PF13521.1 163 6.1e-05 16.0 0.0 1 1 2.5e-06 0.00013 14.9 0.0 2 19 30 47 29 66 0.85 # 5741 # 6367 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.311 7_4 - 259 AAA_28 PF13521.1 163 0.0011 11.9 1.6 1 1 5.9e-05 0.0031 10.4 0.2 1 43 103 150 103 171 0.70 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 AAA_5 PF07728.9 139 3.7e-05 16.5 0.3 1 2 3.6e-06 0.00039 13.2 0.2 1 74 103 172 103 180 0.73 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_4 - 259 AAA_5 PF07728.9 139 3.7e-05 16.5 0.3 2 2 0.068 7.2 -0.7 0.0 91 123 225 257 216 258 0.63 # 2386 # 3162 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4cd5c08e-bc65-4890-b885-7d007ab29ba0 # Target file: checkm_output/bins/pm1636/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1636/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4cd5c08e-bc65-4890-b885-7d007ab29ba0 checkm_output/bins/pm1636/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:58 2020 # [ok]