# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_55 - 79 cobW PF02492.14 178 2.5e-05 16.7 0.1 1 1 2.9e-07 3.1e-05 16.5 0.1 4 25 48 73 45 78 0.78 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_38 - 402 MipZ PF09140.6 261 6e-06 18.4 0.0 1 2 0.0025 0.27 3.2 0.0 3 50 111 163 109 201 0.73 # 30477 # 31682 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_38 - 402 MipZ PF09140.6 261 6e-06 18.4 0.0 2 2 2.8e-06 0.0003 12.9 0.0 87 136 233 282 220 305 0.87 # 30477 # 31682 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_80 - 1752 UvrD_C_2 PF13538.1 104 1.5e-08 27.8 0.3 1 2 0.0055 0.58 3.4 0.0 6 45 1226 1265 1222 1293 0.76 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_80 - 1752 UvrD_C_2 PF13538.1 104 1.5e-08 27.8 0.3 2 2 1.6e-08 1.7e-06 21.1 0.1 3 102 1340 1443 1338 1445 0.79 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_60 - 883 DUF87 PF01935.12 229 1.4e-07 24.5 0.0 1 1 1e-08 5.5e-07 22.6 0.0 26 221 482 668 468 676 0.75 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_28 - 323 DUF87 PF01935.12 229 0.00063 12.6 0.2 1 1 0.0001 0.0055 9.5 0.0 26 52 43 69 40 73 0.85 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 748 NB-ARC PF00931.17 287 0.00015 13.7 0.0 1 1 1e-05 0.00054 11.8 0.0 6 111 31 207 28 221 0.85 # 1024 # 3267 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.506 1_28 - 323 NB-ARC PF00931.17 287 0.00042 12.2 0.3 1 1 1.2e-05 0.00063 11.6 0.3 8 104 29 126 22 144 0.74 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 AAA_22 PF13401.1 131 5.3e-16 52.0 0.3 1 1 3.4e-17 1.2e-15 50.8 0.3 3 129 39 170 36 172 0.77 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 748 AAA_22 PF13401.1 131 5.3e-09 29.3 0.0 1 1 1.3e-08 4.4e-07 23.1 0.0 9 125 50 238 45 243 0.90 # 1024 # 3267 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.506 1_55 - 79 AAA_22 PF13401.1 131 0.00013 15.1 0.0 1 1 1.1e-05 0.00038 13.6 0.1 7 31 47 71 41 76 0.83 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 PRK PF00485.13 194 0.00036 13.1 0.0 1 1 7e-06 0.00074 12.1 0.0 1 38 42 81 42 132 0.66 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 748 KAP_NTPase PF07693.9 325 1.4e-49 161.8 0.0 1 1 1.8e-51 1.9e-49 161.3 0.0 4 323 29 333 26 335 0.86 # 1024 # 3267 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.506 1_28 - 323 AAA_17 PF13207.1 121 0.00016 15.5 0.1 1 1 6.8e-06 0.00036 14.4 0.0 1 40 42 89 42 186 0.63 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 AAA_17 PF13207.1 121 0.001 12.9 0.3 1 1 4.5e-05 0.0024 11.7 0.2 4 23 49 68 46 76 0.86 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 MobB PF03205.9 140 0.00034 13.3 0.1 1 1 3.4e-05 0.0012 11.6 0.0 2 31 42 70 41 86 0.78 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 MobB PF03205.9 140 0.00053 12.7 0.1 1 1 2.1e-05 0.00074 12.2 0.1 4 32 48 76 46 78 0.90 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_60 - 883 MobB PF03205.9 140 0.00085 12.0 0.1 1 1 8.1e-05 0.0029 10.3 0.0 4 37 483 515 481 523 0.79 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_28 - 323 T2SE PF00437.15 272 2.8e-06 19.3 0.7 1 1 1.3e-07 1.4e-05 17.1 0.7 110 161 22 72 6 137 0.81 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 Zeta_toxin PF06414.7 201 0.00077 11.6 0.0 1 1 8e-06 0.00085 11.4 0.0 21 41 49 69 31 75 0.82 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 Arch_ATPase PF01637.13 234 3.9e-05 16.4 0.2 1 1 8.6e-07 9.1e-05 15.2 0.2 8 135 30 142 27 164 0.68 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 AAA_16 PF13191.1 185 3.8e-11 36.3 1.2 1 1 1.4e-11 4.8e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 AAA_16 PF13191.1 185 5.8e-05 16.1 0.0 1 1 1.9e-06 6.8e-05 15.9 0.0 28 51 48 71 39 78 0.88 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_77 - 736 AAA_16 PF13191.1 185 0.00019 14.4 0.0 1 1 1.9e-05 0.00069 12.6 0.0 21 55 182 216 179 247 0.85 # 63565 # 65772 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_55 - 79 AAA_18 PF13238.1 129 4.2e-05 16.9 0.7 1 2 0.021 1.1 2.6 0.0 50 92 9 46 2 49 0.73 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_55 - 79 AAA_18 PF13238.1 129 4.2e-05 16.9 0.7 2 2 9.5e-06 0.0005 13.4 0.3 3 22 49 68 48 77 0.80 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 AAA_18 PF13238.1 129 9.7e-05 15.7 0.0 1 1 3.3e-06 0.00018 14.8 0.0 1 23 43 90 43 138 0.67 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_38 - 402 CbiA PF01656.18 195 2.4e-18 59.2 0.0 1 1 4.6e-20 4.9e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 30477 # 31682 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_28 - 323 KaiC PF06745.8 227 0.00021 13.4 0.1 1 1 4.3e-06 0.00046 12.3 0.1 12 43 33 63 27 149 0.80 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 AAA_14 PF13173.1 128 4.3e-06 19.6 0.0 1 1 3.5e-07 1.8e-05 17.6 0.0 2 96 40 164 39 193 0.62 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 AAA_14 PF13173.1 128 0.00013 14.9 0.2 1 2 0.064 3.4 0.6 0.0 78 104 17 42 11 48 0.76 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_55 - 79 AAA_14 PF13173.1 128 0.00013 14.9 0.2 2 2 1.2e-05 0.00064 12.6 0.0 6 28 48 70 43 76 0.85 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 AAA PF00004.24 132 1.6e-06 21.3 0.0 1 1 3.5e-08 3.8e-06 20.2 0.0 3 97 45 152 43 181 0.68 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_77 - 736 TraG-D_C PF12696.2 128 8.9e-21 67.1 0.0 1 2 0.099 10 -1.0 0.0 12 60 196 243 193 247 0.85 # 63565 # 65772 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_77 - 736 TraG-D_C PF12696.2 128 8.9e-21 67.1 0.0 2 2 4.3e-22 4.6e-20 64.8 0.0 1 127 419 541 419 542 0.87 # 63565 # 65772 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_38 - 402 AAA_31 PF13614.1 157 0.00048 13.1 0.1 1 2 0.071 7.5 -0.6 0.0 12 61 120 174 110 209 0.55 # 30477 # 31682 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_38 - 402 AAA_31 PF13614.1 157 0.00048 13.1 0.1 2 2 3.1e-05 0.0033 10.3 0.0 108 147 235 273 231 279 0.86 # 30477 # 31682 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_55 - 79 NTPase_1 PF03266.10 168 5.2e-05 16.0 0.1 1 1 7.8e-07 8.2e-05 15.3 0.1 2 27 47 72 46 76 0.87 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 AAA_33 PF13671.1 143 0.00017 14.5 0.0 1 1 3.7e-06 0.00039 13.3 0.0 1 45 42 100 42 132 0.60 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 KTI12 PF08433.5 270 0.00067 11.9 0.1 1 1 9.5e-06 0.001 11.3 0.1 6 30 49 73 47 77 0.86 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_80 - 1752 AAA_30 PF13604.1 196 3.5e-46 150.2 12.7 1 3 0.067 2.4 0.7 0.0 41 86 223 269 218 281 0.84 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_80 - 1752 AAA_30 PF13604.1 196 3.5e-46 150.2 12.7 2 3 5e-06 0.00018 14.1 1.9 8 144 420 548 418 559 0.81 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_80 - 1752 AAA_30 PF13604.1 196 3.5e-46 150.2 12.7 3 3 2.2e-44 7.9e-43 139.3 1.3 1 191 967 1160 967 1163 0.94 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_28 - 323 AAA_30 PF13604.1 196 0.00017 14.2 0.3 1 1 1.5e-05 0.00052 12.6 0.3 15 128 38 164 27 170 0.55 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 AAA_30 PF13604.1 196 0.0011 11.5 0.0 1 1 4.1e-05 0.0015 11.1 0.0 22 45 48 72 38 76 0.74 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_60 - 883 FtsK_SpoIIIE PF01580.13 205 2e-05 17.1 0.1 1 2 2e-06 0.00022 13.7 0.0 39 63 476 504 463 507 0.84 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_60 - 883 FtsK_SpoIIIE PF01580.13 205 2e-05 17.1 0.1 2 2 0.021 2.2 0.6 0.0 75 166 530 625 529 633 0.79 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_28 - 323 ABC_tran PF00005.22 137 7.5e-06 19.3 0.1 1 1 2.7e-07 1.5e-05 18.4 0.1 2 90 31 120 30 159 0.75 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 748 ABC_tran PF00005.22 137 0.00011 15.5 0.0 1 1 5.5e-06 0.00029 14.1 0.0 4 37 38 71 36 197 0.85 # 1024 # 3267 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.506 1_80 - 1752 AAA_19 PF13245.1 76 1.1e-07 24.5 1.8 1 1 7.5e-09 2.7e-07 23.3 0.3 7 76 980 1046 973 1046 0.78 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_55 - 79 AAA_19 PF13245.1 76 1.2e-05 18.0 0.0 1 1 4.6e-07 1.6e-05 17.6 0.0 14 42 48 75 41 78 0.80 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 AAA_19 PF13245.1 76 6.8e-05 15.6 0.2 1 1 9.8e-06 0.00035 13.3 0.1 6 37 36 67 32 119 0.75 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 DUF463 PF04317.7 443 3.2e-05 15.6 0.0 1 1 3.5e-07 3.7e-05 15.4 0.0 2 30 46 74 45 78 0.89 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_60 - 883 AAA_10 PF12846.2 304 1.2e-49 162.4 0.0 1 1 7.7e-51 2e-49 161.6 0.0 1 294 479 768 479 774 0.88 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_77 - 736 AAA_10 PF12846.2 304 9.6e-07 21.4 0.0 1 1 1.4e-06 3.7e-05 16.2 0.0 4 295 188 493 186 498 0.52 # 63565 # 65772 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_28 - 323 AAA_10 PF12846.2 304 1.1e-06 21.3 0.1 1 2 1.7e-05 0.00044 12.7 0.0 3 34 42 73 40 106 0.73 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 AAA_10 PF12846.2 304 1.1e-06 21.3 0.1 2 2 0.0025 0.068 5.5 0.0 216 245 120 150 79 207 0.83 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 AAA_10 PF12846.2 304 0.00027 13.4 0.2 1 2 0.0027 0.071 5.4 0.0 272 286 15 33 4 37 0.76 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_55 - 79 AAA_10 PF12846.2 304 0.00027 13.4 0.2 2 2 0.0015 0.039 6.3 0.1 6 29 49 72 45 76 0.87 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 ResIII PF04851.10 184 1e-05 18.4 0.2 1 2 3.4e-05 0.0018 11.1 0.3 29 101 44 110 20 121 0.72 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 ResIII PF04851.10 184 1e-05 18.4 0.2 2 2 0.0012 0.061 6.1 0.0 131 162 109 140 96 153 0.63 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 ResIII PF04851.10 184 0.00024 14.0 0.0 1 1 5.2e-06 0.00028 13.7 0.0 6 51 13 70 9 76 0.83 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_33 - 372 DUF3584 PF12128.3 1201 0.046 3.9 61.1 1 1 0.0042 0.44 0.6 61.0 261 533 79 352 68 366 0.56 # 26326 # 27441 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_55 - 79 Viral_helicase1 PF01443.13 234 0.00024 13.7 0.1 1 1 3.4e-06 0.00036 13.1 0.1 3 29 49 73 47 77 0.84 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 DUF2075 PF09848.4 352 1.9e-06 20.0 0.1 1 1 5.2e-08 2.7e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 DUF2075 PF09848.4 352 8.3e-06 17.9 0.0 1 1 1.9e-07 1e-05 17.6 0.0 5 30 48 73 44 78 0.79 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_77 - 736 TrwB_AAD_bind PF10412.4 386 1.8e-145 477.3 0.0 1 1 8.4e-147 2.2e-145 477.0 0.0 2 386 172 561 171 561 0.99 # 63565 # 65772 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_60 - 883 TrwB_AAD_bind PF10412.4 386 6.1e-07 21.3 0.2 1 1 9.4e-08 2.5e-06 19.3 0.0 15 53 479 517 470 551 0.81 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_28 - 323 TrwB_AAD_bind PF10412.4 386 0.00015 13.4 0.5 1 2 6.6e-05 0.0018 9.9 0.0 14 44 39 69 35 76 0.83 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 TrwB_AAD_bind PF10412.4 386 0.00015 13.4 0.5 2 2 0.085 2.2 -0.3 0.0 234 275 115 158 112 169 0.78 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 TrwB_AAD_bind PF10412.4 386 0.00024 12.8 0.0 1 1 1.7e-05 0.00045 11.8 0.0 12 44 41 73 33 76 0.84 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_80 - 1752 AAA_11 PF13086.1 236 0.0002 13.9 2.1 1 1 7.7e-06 0.00041 12.9 0.0 2 75 968 1038 967 1059 0.81 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_55 - 79 AAA_11 PF13086.1 236 0.00026 13.6 0.0 1 1 5e-06 0.00026 13.6 0.0 16 43 44 70 18 78 0.78 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_77 - 736 T4SS-DNA_transf PF02534.9 469 5.2e-12 38.0 0.0 1 1 2e-13 1e-11 37.0 0.0 276 391 394 505 363 542 0.81 # 63565 # 65772 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_60 - 883 T4SS-DNA_transf PF02534.9 469 0.00016 13.3 0.0 1 2 0.0015 0.079 4.4 0.0 105 185 533 607 470 622 0.86 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_60 - 883 T4SS-DNA_transf PF02534.9 469 0.00016 13.3 0.0 2 2 0.00033 0.017 6.6 0.0 321 378 713 769 665 771 0.93 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_55 - 79 ArgK PF03308.11 267 5.4e-06 18.3 0.0 1 1 5.1e-08 5.4e-06 18.3 0.0 30 59 45 74 21 77 0.87 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_55 - 79 Pox_A32 PF04665.7 241 0.00039 12.7 0.0 1 1 4.9e-06 0.00052 12.3 0.0 9 40 40 71 35 74 0.88 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 PIF1 PF05970.9 364 3e-05 16.0 0.0 1 1 6.3e-07 6.7e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 RNA_helicase PF00910.17 107 0.00065 12.9 0.2 1 1 1.1e-05 0.0012 12.1 0.1 3 28 49 74 47 78 0.85 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 UPF0079 PF02367.12 123 0.00012 14.7 0.0 1 1 2.2e-06 0.00023 13.8 0.0 3 45 28 70 26 114 0.84 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_101 - 129 BOF PF04076.8 103 7.1e-44 140.9 0.7 1 1 7.9e-46 8.4e-44 140.7 0.7 2 102 25 125 24 126 0.98 # 88600 # 88986 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_28 - 323 NACHT PF05729.7 166 0.00051 12.7 0.2 1 1 1.1e-05 0.0012 11.5 0.2 1 28 41 68 41 140 0.77 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 AAA_5 PF07728.9 139 8.5e-05 15.3 0.1 1 1 7e-06 0.00074 12.2 0.2 5 90 46 149 43 152 0.85 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e9bb472a-ad8f-4ad2-adb1-75de9d8bb13b # Target file: checkm_output/bins/pm1635/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1635/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e9bb472a-ad8f-4ad2-adb1-75de9d8bb13b checkm_output/bins/pm1635/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:59 2020 # [ok]