# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_27 - 344 IstB_IS21 PF01695.12 178 0.00039 12.0 0.0 1 1 1.4e-05 0.00078 11.0 0.0 45 66 161 182 144 186 0.92 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_55 - 221 MipZ PF09140.6 261 4.3e-10 31.2 1.8 1 1 2.5e-09 1.4e-07 22.9 1.3 2 130 4 111 3 132 0.75 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_19 - 635 NB-ARC PF00931.17 287 6e-07 20.6 1.3 1 1 1.1e-08 6e-07 20.6 1.3 17 174 100 250 87 270 0.74 # 17531 # 19435 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.308 1_19 - 635 AAA_22 PF13401.1 131 6.6e-09 28.1 0.9 1 2 2.6e-08 7.5e-07 21.5 0.2 4 120 102 210 98 215 0.76 # 17531 # 19435 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.308 1_19 - 635 AAA_22 PF13401.1 131 6.6e-09 28.1 0.9 2 2 0.011 0.31 3.3 0.0 38 83 438 482 402 490 0.76 # 17531 # 19435 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.308 1_27 - 344 AAA_22 PF13401.1 131 0.00034 12.9 0.0 1 1 2.1e-05 0.00059 12.1 0.0 5 30 164 189 160 241 0.69 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_27 - 344 ATP_bind_1 PF03029.12 238 0.00026 12.7 0.0 1 1 1.4e-05 0.00039 12.1 0.0 2 23 169 190 168 206 0.87 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_55 - 221 ATP_bind_1 PF03029.12 238 0.00047 11.8 0.2 1 1 0.0003 0.0085 7.7 0.2 6 40 13 47 10 115 0.83 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_55 - 221 SRP54 PF00448.17 196 0.00028 12.4 0.1 1 1 1.1e-05 0.0006 11.4 0.1 10 98 12 94 3 134 0.78 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_27 - 344 AAA_17 PF13207.1 121 2.7e-05 17.1 0.0 1 1 1e-06 5.7e-05 16.1 0.0 2 43 166 207 165 243 0.80 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_55 - 221 MobB PF03205.9 140 6e-06 18.1 0.7 1 2 3e-05 0.00058 11.7 0.3 2 37 4 40 3 52 0.86 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_55 - 221 MobB PF03205.9 140 6e-06 18.1 0.7 2 2 0.0047 0.09 4.6 0.0 44 75 85 119 72 133 0.81 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_27 - 344 MobB PF03205.9 140 7e-05 14.7 0.0 1 1 6.4e-06 0.00012 13.9 0.0 2 42 165 204 164 227 0.86 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_19 - 635 MobB PF03205.9 140 0.00042 12.2 0.1 1 1 5.2e-05 0.00099 10.9 0.1 3 113 105 196 103 228 0.75 # 17531 # 19435 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.308 1_55 - 221 ArsA_ATPase PF02374.10 305 3.8e-09 28.0 0.1 1 1 1.2e-10 7e-09 27.2 0.1 4 43 6 45 3 61 0.91 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_27 - 344 T2SE PF00437.15 272 3e-53 172.5 0.0 1 1 6.6e-55 3.8e-53 172.2 0.0 12 267 25 312 16 316 0.89 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_27 - 344 Zeta_toxin PF06414.7 201 1.2e-05 16.6 0.0 1 1 3.3e-07 1.9e-05 16.0 0.0 10 59 156 208 148 232 0.82 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_55 - 221 VirC1 PF07015.6 231 8.2e-09 26.9 0.0 1 1 2.6e-10 1.5e-08 26.1 0.0 3 55 4 56 2 61 0.92 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_55 - 221 Fer4_NifH PF00142.13 273 8.7e-07 20.4 0.2 1 1 3.7e-08 2.1e-06 19.2 0.1 6 41 9 44 5 52 0.91 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_19 - 635 Arch_ATPase PF01637.13 234 2.1e-05 16.4 1.4 1 1 3.7e-07 2.1e-05 16.4 1.4 20 83 102 208 93 273 0.63 # 17531 # 19435 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.308 1_27 - 344 AAA_16 PF13191.1 185 0.00061 11.9 0.0 1 1 1.5e-05 0.00083 11.5 0.0 22 54 161 194 148 300 0.76 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_27 - 344 AAA_23 PF13476.1 202 0.00022 13.7 0.2 1 1 7.3e-06 0.00042 12.8 0.2 21 38 165 182 155 185 0.88 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_55 - 221 CbiA PF01656.18 195 2.3e-15 48.6 0.6 1 1 1.1e-16 6.2e-15 47.2 0.6 2 167 6 155 5 180 0.73 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_27 - 344 KaiC PF06745.8 227 0.00056 11.1 0.1 1 1 1.7e-05 0.00099 10.3 0.1 8 37 152 181 147 187 0.88 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_27 - 344 AAA_29 PF13555.1 62 6.1e-05 14.7 0.0 1 1 2.3e-06 0.00013 13.6 0.0 20 43 160 183 145 186 0.78 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_19 - 635 MMR_HSR1 PF01926.18 116 0.0015 10.6 3.4 1 2 0.00037 0.021 6.9 0.9 4 37 107 140 105 275 0.71 # 17531 # 19435 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.308 1_19 - 635 MMR_HSR1 PF01926.18 116 0.0015 10.6 3.4 2 2 0.011 0.62 2.2 0.1 69 95 549 583 527 607 0.62 # 17531 # 19435 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.308 1_27 - 344 DUF258 PF03193.11 161 0.00014 13.2 0.0 1 1 3.9e-06 0.00022 12.5 0.0 31 59 158 187 144 220 0.82 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_26 - 612 TraG-D_C PF12696.2 128 1.5e-27 88.2 0.0 1 1 4.3e-29 2.5e-27 87.4 0.0 2 127 416 534 415 535 0.87 # 23131 # 24966 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.420 1_55 - 221 AAA_31 PF13614.1 157 4.5e-07 22.0 0.0 1 2 8.5e-07 4.9e-05 15.4 0.0 1 41 3 43 3 57 0.90 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_55 - 221 AAA_31 PF13614.1 157 4.5e-07 22.0 0.0 2 2 0.0021 0.12 4.4 0.0 111 151 73 112 63 115 0.83 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_27 - 344 AAA_33 PF13671.1 143 9.4e-06 17.7 0.0 1 2 0.078 4.4 -0.7 0.0 7 38 96 126 93 161 0.81 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_27 - 344 AAA_33 PF13671.1 143 9.4e-06 17.7 0.0 2 2 6.8e-07 3.9e-05 15.7 0.0 2 25 166 191 165 274 0.71 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_19 - 635 ABC_tran PF00005.22 137 2.7e-05 16.6 0.2 1 1 2.2e-06 6.2e-05 15.4 0.2 6 45 97 136 94 261 0.76 # 17531 # 19435 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.308 1_27 - 344 ABC_tran PF00005.22 137 3.1e-05 16.4 0.0 1 1 3e-06 8.6e-05 15.0 0.0 7 32 159 184 155 226 0.85 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_34 - 918 AAA_10 PF12846.2 304 1.1e-35 115.5 0.0 1 1 6.9e-37 2e-35 114.8 0.0 3 294 539 825 538 832 0.93 # 31293 # 34046 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.444 1_19 - 635 AAA_10 PF12846.2 304 0.00012 13.7 0.2 1 1 2.7e-05 0.00078 11.0 0.2 2 66 103 229 102 612 0.80 # 17531 # 19435 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.308 1_27 - 344 DEAD PF00270.24 169 0.00013 13.6 0.0 1 1 3.9e-06 0.00022 12.9 0.0 6 33 154 182 151 246 0.77 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_26 - 612 TrwB_AAD_bind PF10412.4 386 2.7e-21 67.6 0.0 1 1 7.6e-23 4.4e-21 67.0 0.0 165 380 331 548 306 552 0.86 # 23131 # 24966 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.420 1_26 - 612 T4SS-DNA_transf PF02534.9 469 8e-146 478.3 0.0 1 1 1.8e-147 1e-145 478.0 0.0 2 460 102 569 101 579 0.98 # 23131 # 24966 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.420 1_55 - 221 ArgK PF03308.11 267 0.00031 11.6 0.1 1 2 1.6e-05 0.00091 10.1 0.1 37 66 11 40 3 45 0.88 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_55 - 221 ArgK PF03308.11 267 0.00031 11.6 0.1 2 2 0.071 4 -1.8 0.0 154 174 88 107 63 144 0.54 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_55 - 221 GTP_EFTU PF00009.22 188 1.3e-07 23.3 0.1 1 1 2.6e-09 1.5e-07 23.1 0.1 15 139 15 153 6 211 0.72 # 44963 # 45625 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_27 - 344 UPF0079 PF02367.12 123 0.00027 12.7 0.0 1 1 8.6e-06 0.00049 11.9 0.0 8 39 156 187 151 196 0.83 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_19 - 635 NACHT PF05729.7 166 5.4e-13 41.0 0.1 1 1 1.7e-14 9.7e-13 40.2 0.1 5 132 107 218 103 252 0.75 # 17531 # 19435 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.308 1_27 - 344 AAA_25 PF13481.1 194 0.00017 13.1 0.0 1 1 4.3e-06 0.00025 12.6 0.0 22 51 152 181 140 248 0.87 # 24969 # 26000 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/85138f64-f25d-4a4f-a984-bfa9f3d3f7ea # Target file: checkm_output/bins/pm163/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm163/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/85138f64-f25d-4a4f-a984-bfa9f3d3f7ea checkm_output/bins/pm163/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:53 2020 # [ok]