# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_70 - 231 OB_NTP_bind PF07717.11 114 0.00055 12.7 0.0 1 1 7.8e-06 0.00079 12.2 0.0 24 83 28 97 16 158 0.79 # 58419 # 59111 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_23 - 228 UPF0020 PF01170.13 180 1.2e-05 17.9 0.0 1 2 0.00026 0.026 7.0 0.0 103 123 17 37 4 88 0.71 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_23 - 228 UPF0020 PF01170.13 180 1.2e-05 17.9 0.0 2 2 6.3e-05 0.0064 9.0 0.0 28 54 163 189 158 220 0.67 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_18 - 252 IstB_IS21 PF01695.12 178 3.5e-55 179.1 0.0 1 1 4.3e-57 4.4e-55 178.7 0.0 3 176 56 230 54 232 0.98 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_12 - 209 MipZ PF09140.6 261 1.9e-21 69.2 0.5 1 2 1.2e-12 1.2e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_12 - 209 MipZ PF09140.6 261 1.9e-21 69.2 0.5 2 2 1.6e-12 1.6e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_12 - 209 YhjQ PF06564.7 244 2.4e-05 16.7 0.3 1 2 1.8e-06 0.00018 13.8 0.3 4 38 3 37 1 50 0.89 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_12 - 209 YhjQ PF06564.7 244 2.4e-05 16.7 0.3 2 2 0.029 3 0.0 0.0 108 144 69 103 44 113 0.78 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_31 - 176 SSB PF00436.20 104 6.5e-41 131.4 0.4 1 1 8.6e-43 8.7e-41 131.0 0.4 1 101 6 109 6 112 0.96 # 22311 # 22838 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_75 - 383 DUF87 PF01935.12 229 0.00094 11.9 0.0 1 1 1.7e-05 0.0017 11.1 0.0 28 56 162 191 161 192 0.83 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_75 - 383 AAA_22 PF13401.1 131 1.3e-05 18.2 0.0 1 1 9.7e-07 3.3e-05 17.0 0.0 4 26 157 179 152 233 0.76 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_18 - 252 AAA_22 PF13401.1 131 8.2e-05 15.7 0.4 1 2 0.00028 0.0094 9.0 0.0 7 26 104 123 98 133 0.87 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_18 - 252 AAA_22 PF13401.1 131 8.2e-05 15.7 0.4 2 2 0.0062 0.21 4.7 0.1 77 113 151 193 126 210 0.63 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_88 - 518 AAA_22 PF13401.1 131 0.00027 14.0 0.0 1 1 1.9e-05 0.00064 12.8 0.0 6 28 227 249 222 330 0.77 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_75 - 383 ATP_bind_1 PF03029.12 238 1.9e-05 17.2 0.0 1 1 3e-07 3e-05 16.5 0.0 1 30 162 191 162 198 0.86 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_23 - 228 Methyltransf_11 PF08241.7 95 0.00063 13.2 0.0 1 2 0.0024 0.25 4.9 0.0 78 93 53 68 48 70 0.84 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_23 - 228 Methyltransf_11 PF08241.7 95 0.00063 13.2 0.0 2 2 0.0014 0.14 5.7 0.0 5 54 172 220 168 226 0.82 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_12 - 209 SRP54 PF00448.17 196 2.5e-07 23.2 0.1 1 1 1.5e-08 1.5e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_23 - 228 N6_N4_Mtase PF01555.13 231 4.7e-37 120.6 0.0 1 1 3.6e-37 3.6e-35 114.4 0.0 1 228 21 200 21 203 0.91 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_12 - 209 AAA_17 PF13207.1 121 1.6e-05 18.7 0.0 1 1 1.6e-06 4.1e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_75 - 383 AAA_17 PF13207.1 121 1.7e-05 18.6 0.1 1 1 8.2e-06 0.00021 15.1 0.0 3 51 161 212 161 252 0.79 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_88 - 518 AAA_17 PF13207.1 121 2.4e-05 18.1 0.3 1 1 4.1e-06 0.0001 16.0 0.0 1 24 227 255 227 347 0.72 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_18 - 252 AAA_17 PF13207.1 121 0.00065 13.5 0.4 1 1 6.7e-05 0.0017 12.1 0.1 2 77 104 170 103 227 0.64 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_75 - 383 Miro PF08477.8 119 0.0011 12.4 0.0 1 1 4.3e-05 0.0043 10.5 0.0 3 25 161 183 161 208 0.77 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_75 - 383 MobB PF03205.9 140 2.1e-05 17.2 0.0 1 2 0.033 1.7 1.3 0.0 14 60 61 108 61 127 0.88 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_75 - 383 MobB PF03205.9 140 2.1e-05 17.2 0.0 2 2 6.8e-06 0.00035 13.2 0.0 5 29 162 185 160 195 0.83 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_12 - 209 MobB PF03205.9 140 5.7e-05 15.8 0.1 1 1 3.2e-06 0.00016 14.3 0.0 10 42 11 41 1 46 0.79 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_12 - 209 ArsA_ATPase PF02374.10 305 4.4e-08 25.4 0.9 1 3 1.2e-09 1.2e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_12 - 209 ArsA_ATPase PF02374.10 305 4.4e-08 25.4 0.9 2 3 0.053 5.4 -1.2 0.0 121 135 69 85 47 86 0.75 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_12 - 209 ArsA_ATPase PF02374.10 305 4.4e-08 25.4 0.9 3 3 0.075 7.6 -1.7 0.0 205 234 132 161 118 202 0.65 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_18 - 252 AFG1_ATPase PF03969.11 362 2.8e-06 19.2 0.0 1 1 3.2e-08 3.3e-06 19.0 0.0 33 168 72 204 47 248 0.84 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_88 - 518 T2SE PF00437.15 272 2.8e-41 134.1 0.0 1 1 9.6e-43 4.8e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_75 - 383 T2SE PF00437.15 272 1.1e-35 115.8 0.0 1 1 3.2e-37 1.6e-35 115.2 0.0 120 269 149 306 127 309 0.88 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_88 - 518 G-alpha PF00503.15 389 0.00064 11.3 0.0 1 2 0.054 5.5 -1.6 0.0 234 272 70 113 29 117 0.80 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_88 - 518 G-alpha PF00503.15 389 0.00064 11.3 0.0 2 2 1.9e-05 0.0019 9.8 0.0 58 87 225 254 214 322 0.84 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_12 - 209 VirC1 PF07015.6 231 3.4e-09 29.0 0.0 1 1 7.1e-11 7.2e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_12 - 209 Fer4_NifH PF00142.13 273 7.5e-05 14.9 0.2 1 1 2.3e-06 0.00023 13.3 0.0 8 38 9 39 2 46 0.89 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_18 - 252 Arch_ATPase PF01637.13 234 0.00016 14.3 0.2 1 2 0.00021 0.021 7.4 0.0 22 58 103 139 89 149 0.83 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_18 - 252 Arch_ATPase PF01637.13 234 0.00016 14.3 0.2 2 2 0.00057 0.057 6.0 0.1 97 151 144 191 135 202 0.71 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_18 - 252 AAA_16 PF13191.1 185 4.3e-06 19.7 1.2 1 2 1.3e-05 0.00045 13.1 0.1 24 48 101 125 85 140 0.79 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_18 - 252 AAA_16 PF13191.1 185 4.3e-06 19.7 1.2 2 2 0.0034 0.11 5.3 0.1 131 169 141 187 131 199 0.58 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_88 - 518 AAA_16 PF13191.1 185 0.0001 15.3 0.0 1 1 9.6e-06 0.00032 13.6 0.0 8 51 213 252 212 301 0.78 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_75 - 383 AAA_16 PF13191.1 185 0.00072 12.5 0.0 1 1 4.5e-05 0.0015 11.4 0.0 27 52 160 188 148 282 0.81 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_88 - 518 AAA_23 PF13476.1 202 0.00014 15.2 0.2 1 1 9.7e-06 0.00049 13.4 0.0 20 38 226 244 208 249 0.84 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_75 - 383 AAA_23 PF13476.1 202 0.00021 14.6 0.0 1 1 6.8e-06 0.00034 13.9 0.0 19 40 157 178 142 206 0.85 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_75 - 383 AAA_18 PF13238.1 129 0.00026 14.3 0.0 1 1 9.9e-06 0.0005 13.3 0.0 2 19 161 182 161 232 0.72 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_88 - 518 AAA_18 PF13238.1 129 0.00039 13.7 0.0 1 1 2.1e-05 0.0011 12.2 0.0 1 18 228 245 228 316 0.86 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_12 - 209 CbiA PF01656.18 195 1.8e-22 72.6 0.0 1 1 3.1e-24 3.1e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_88 - 518 AAA_14 PF13173.1 128 0.00091 12.1 0.0 1 1 3.7e-05 0.0037 10.1 0.0 5 30 228 254 225 286 0.80 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_18 - 252 AAA_29 PF13555.1 62 1e-05 17.9 0.0 1 1 6.5e-07 2.2e-05 16.9 0.0 20 57 98 136 84 139 0.81 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_75 - 383 AAA_29 PF13555.1 62 2.8e-05 16.6 0.0 1 1 2.4e-06 8.2e-05 15.1 0.0 26 43 160 177 151 189 0.85 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_88 - 518 AAA_29 PF13555.1 62 2.8e-05 16.5 0.0 1 1 1.7e-06 5.8e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_18 - 252 AAA PF00004.24 132 0.00018 14.7 0.0 1 1 6.1e-06 0.00031 13.9 0.0 1 74 104 178 104 224 0.78 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_88 - 518 AAA PF00004.24 132 0.00026 14.2 0.0 1 3 0.089 4.5 0.4 0.0 38 57 81 100 26 114 0.78 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_88 - 518 AAA PF00004.24 132 0.00026 14.2 0.0 2 3 0.00065 0.033 7.3 0.0 1 21 228 248 228 278 0.83 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_88 - 518 AAA PF00004.24 132 0.00026 14.2 0.0 3 3 0.034 1.7 1.8 0.0 9 66 442 508 436 515 0.64 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_18 - 252 Bac_DnaA PF00308.13 219 1.8e-09 30.4 0.0 1 1 2.6e-11 2.7e-09 29.9 0.0 37 138 104 202 80 209 0.89 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_48 - 764 TraG-D_C PF12696.2 128 1.3e-06 21.3 0.2 1 1 2.8e-08 2.9e-06 20.1 0.2 1 88 437 524 437 554 0.82 # 36604 # 38895 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_12 - 209 AAA_31 PF13614.1 157 4.3e-06 19.6 0.0 1 2 2.5e-07 2.5e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_12 - 209 AAA_31 PF13614.1 157 4.3e-06 19.6 0.0 2 2 0.055 5.5 -0.2 0.0 109 127 68 86 62 113 0.68 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_23 - 228 Methyltransf_26 PF13659.1 117 7e-12 38.4 0.1 1 2 1.5e-07 1.5e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_23 - 228 Methyltransf_26 PF13659.1 117 7e-12 38.4 0.1 2 2 1e-07 1e-05 18.5 0.0 4 44 167 206 164 222 0.82 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_88 - 518 AAA_30 PF13604.1 196 0.00033 13.2 0.0 1 1 5.8e-06 0.00058 12.4 0.0 4 44 211 251 209 276 0.84 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_78 - 195 DNA_pol3_delta PF06144.8 172 2.1e-06 20.3 0.0 1 1 3e-08 3e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 66995 # 67579 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 1_75 - 383 FtsK_SpoIIIE PF01580.13 205 0.00094 11.6 0.0 1 1 1.7e-05 0.0018 10.7 0.0 41 60 160 179 137 189 0.87 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_88 - 518 ABC_tran PF00005.22 137 8.9e-05 15.7 0.1 1 1 8e-06 0.00027 14.2 0.0 12 37 226 251 217 288 0.81 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_18 - 252 ABC_tran PF00005.22 137 0.00016 15.0 0.0 1 1 8.3e-06 0.00028 14.1 0.0 8 33 98 123 95 155 0.90 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_75 - 383 ABC_tran PF00005.22 137 0.00021 14.6 0.0 1 1 1.2e-05 0.00039 13.7 0.0 16 34 162 180 152 221 0.85 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_23 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 17.6 0.0 1 2 0.00039 0.039 6.2 0.0 112 146 18 54 9 81 0.65 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_23 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 17.6 0.0 2 2 3.9e-05 0.004 9.5 0.0 41 62 162 183 145 219 0.78 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_88 - 518 DAP3 PF10236.4 309 0.00064 11.6 0.0 1 1 1.2e-05 0.0012 10.7 0.0 21 42 223 244 215 253 0.86 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_88 - 518 AAA_19 PF13245.1 76 9.6e-05 15.1 0.0 1 1 5.3e-06 0.00027 13.7 0.0 10 46 226 259 218 268 0.79 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_12 - 209 AAA_19 PF13245.1 76 0.00029 13.5 0.1 1 2 0.00019 0.0097 8.6 0.0 20 48 11 35 9 44 0.84 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_12 - 209 AAA_19 PF13245.1 76 0.00029 13.5 0.1 2 2 0.021 1.1 2.1 0.0 42 63 135 158 118 184 0.76 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_62 - 1015 AAA_10 PF12846.2 304 1.1e-30 100.0 0.0 1 1 1.5e-31 2.6e-30 98.7 0.0 8 302 502 897 498 898 0.88 # 50277 # 53321 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_18 - 252 AAA_10 PF12846.2 304 8.2e-06 18.3 0.0 1 1 5.9e-07 1e-05 18.0 0.0 3 32 103 132 101 207 0.78 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_48 - 764 AAA_10 PF12846.2 304 2.4e-05 16.8 1.0 1 1 4.4e-06 7.3e-05 15.2 0.9 2 287 137 501 136 514 0.62 # 36604 # 38895 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_12 - 209 AAA_10 PF12846.2 304 0.00016 14.1 0.0 1 1 1.5e-05 0.00025 13.4 0.0 11 39 11 39 3 66 0.90 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_88 - 518 AAA_10 PF12846.2 304 0.00023 13.5 0.0 1 1 2.5e-05 0.00042 12.7 0.0 4 30 228 256 226 321 0.81 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_75 - 383 AAA_10 PF12846.2 304 0.00034 13.0 0.0 1 1 4e-05 0.00067 12.0 0.0 2 21 158 177 157 195 0.86 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_18 - 252 DUF815 PF05673.8 250 1.3e-07 23.7 0.0 1 1 1.6e-09 1.6e-07 23.4 0.0 38 124 89 179 53 203 0.68 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_44 - 283 Methyltransf_27 PF13708.1 194 1.2e-67 220.2 0.0 1 1 1.6e-69 1.6e-67 219.7 0.0 2 194 85 278 84 278 0.96 # 32022 # 32870 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_48 - 764 TrwB_AAD_bind PF10412.4 386 4e-07 21.8 0.3 1 2 9.3e-05 0.0094 7.4 0.0 11 32 132 153 126 157 0.84 # 36604 # 38895 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_48 - 764 TrwB_AAD_bind PF10412.4 386 4e-07 21.8 0.3 2 2 5.3e-06 0.00053 11.5 0.1 247 332 440 525 427 555 0.88 # 36604 # 38895 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 228 MethyltransfD12 PF02086.10 260 0.00043 12.7 0.0 1 2 0.015 1.5 1.0 0.0 175 188 18 31 8 92 0.82 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_23 - 228 MethyltransfD12 PF02086.10 260 0.00043 12.7 0.0 2 2 4e-05 0.004 9.5 0.0 20 46 163 189 148 197 0.78 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_18 - 252 RNA_helicase PF00910.17 107 9.2e-05 15.6 0.0 1 1 4.1e-06 0.00041 13.5 0.0 1 74 104 188 104 191 0.76 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_18 - 252 NACHT PF05729.7 166 0.00029 13.5 0.3 1 1 3.6e-05 0.0036 9.9 0.3 3 25 104 126 102 221 0.91 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_18 - 252 AAA_25 PF13481.1 194 8.6e-06 18.2 0.1 1 1 6.1e-07 1.5e-05 17.3 0.1 26 58 92 126 69 194 0.82 # 13243 # 13998 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_12 - 209 AAA_25 PF13481.1 194 0.00012 14.4 0.1 1 1 1.2e-05 0.00031 13.1 0.0 42 87 10 44 3 90 0.78 # 8788 # 9414 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_75 - 383 AAA_25 PF13481.1 194 0.00016 14.0 0.0 1 1 1.2e-05 0.00029 13.2 0.0 24 55 148 179 124 201 0.82 # 64183 # 65331 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_88 - 518 AAA_25 PF13481.1 194 0.00031 13.1 0.0 1 2 0.00017 0.0044 9.3 0.0 25 65 217 260 200 270 0.72 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_88 - 518 AAA_25 PF13481.1 194 0.00031 13.1 0.0 2 2 0.077 2 0.7 0.0 153 190 297 337 292 340 0.74 # 76566 # 78119 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_23 - 228 Methyltransf_15 PF09445.5 164 0.00078 11.9 0.0 1 2 0.042 4.2 -0.2 0.0 53 79 4 29 2 33 0.90 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_23 - 228 Methyltransf_15 PF09445.5 164 0.00078 11.9 0.0 2 2 4.3e-05 0.0044 9.5 0.0 3 31 166 194 164 208 0.86 # 17863 # 18546 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e08ce383-c64a-464b-8a56-83cbcbd0a051 # Target file: checkm_output/bins/pm1623/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1623/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e08ce383-c64a-464b-8a56-83cbcbd0a051 checkm_output/bins/pm1623/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:50 2020 # [ok]