# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_56 - 699 Mg_chelatase PF01078.16 207 0.00064 12.7 0.1 1 2 1.6e-05 0.0029 10.5 0.0 13 50 510 547 503 569 0.86 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_56 - 699 Mg_chelatase PF01078.16 207 0.00064 12.7 0.1 2 2 0.058 11 -1.1 0.0 106 116 647 657 628 687 0.78 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 7_5 - 228 UPF0020 PF01170.13 180 3.8e-05 17.1 0.0 1 2 0.00045 0.085 6.2 0.0 103 117 17 31 4 81 0.80 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 7_5 - 228 UPF0020 PF01170.13 180 3.8e-05 17.1 0.0 2 2 6.3e-05 0.012 9.0 0.0 28 54 163 189 158 220 0.67 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 3_15 - 706 ABC_ATPase PF09818.4 448 0.00037 12.9 0.2 1 2 0.00092 0.17 4.1 0.0 241 265 490 515 476 522 0.90 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 3_15 - 706 ABC_ATPase PF09818.4 448 0.00037 12.9 0.2 2 2 0.00018 0.033 6.5 0.0 304 366 585 651 573 680 0.71 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 3_3 - 209 MipZ PF09140.6 261 3.5e-21 69.2 0.5 1 2 2.4e-12 2.2e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_3 - 209 MipZ PF09140.6 261 3.5e-21 69.2 0.5 2 2 3.2e-12 3e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 5_6 - 215 MipZ PF09140.6 261 4.5e-08 26.2 2.3 1 2 0.0016 0.15 4.8 0.5 7 25 8 26 2 38 0.71 # 2749 # 3393 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 5_6 - 215 MipZ PF09140.6 261 4.5e-08 26.2 2.3 2 2 1.8e-08 1.7e-06 21.1 0.1 70 133 45 108 25 125 0.84 # 2749 # 3393 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 3_3 - 209 YhjQ PF06564.7 244 4.4e-05 16.7 0.3 1 2 1.8e-06 0.00034 13.8 0.3 4 38 3 37 1 50 0.89 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_3 - 209 YhjQ PF06564.7 244 4.4e-05 16.7 0.3 2 2 0.029 5.5 0.0 0.0 108 144 69 103 44 113 0.78 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 2_35 - 176 SSB PF00436.20 104 1.9e-40 130.8 0.6 1 1 1.4e-42 2.6e-40 130.3 0.6 1 101 6 109 6 112 0.96 # 32357 # 32884 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_20 - 383 DUF87 PF01935.12 229 6.6e-05 16.6 0.0 1 1 2.6e-06 0.00012 15.7 0.0 28 51 162 186 161 192 0.83 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_56 - 699 DUF87 PF01935.12 229 0.00044 13.9 0.1 1 1 1.7e-05 0.0008 13.0 0.1 24 56 520 551 510 556 0.79 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 3_15 - 706 DUF87 PF01935.12 229 0.00048 13.8 0.1 1 1 1e-05 0.00048 13.8 0.1 26 61 497 530 480 531 0.80 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 2_17 - 767 DUF87 PF01935.12 229 0.0013 12.4 0.1 1 1 0.0001 0.0047 10.5 0.0 16 40 130 153 120 168 0.80 # 16692 # 18992 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_20 - 383 NB-ARC PF00931.17 287 0.0011 11.7 0.0 1 1 1.1e-05 0.002 10.8 0.0 18 49 156 185 145 193 0.79 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 383 AAA_22 PF13401.1 131 1.5e-05 19.0 0.0 1 1 6.2e-07 2.9e-05 18.0 0.0 3 44 156 194 153 233 0.76 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 503 AAA_22 PF13401.1 131 2.2e-05 18.4 0.0 1 1 9e-07 4.2e-05 17.5 0.0 4 49 229 281 225 345 0.80 # 29174 # 30682 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.545 3_15 - 706 AAA_22 PF13401.1 131 6.5e-05 16.9 0.3 1 1 9.1e-06 0.00043 14.2 0.3 7 106 497 641 491 666 0.66 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_56 - 699 AAA_22 PF13401.1 131 7e-05 16.8 0.1 1 2 4e-05 0.0019 12.2 0.1 6 24 521 539 517 556 0.89 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_56 - 699 AAA_22 PF13401.1 131 7e-05 16.8 0.1 2 2 0.064 3 1.8 0.0 55 105 619 664 615 689 0.75 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 7_5 - 228 Methyltransf_11 PF08241.7 95 0.0011 13.2 0.0 1 2 0.0024 0.45 4.9 0.0 78 93 53 68 47 70 0.84 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 7_5 - 228 Methyltransf_11 PF08241.7 95 0.0011 13.2 0.0 2 2 0.0014 0.26 5.7 0.0 5 54 172 220 168 226 0.82 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 1_36 - 432 YjeF_N PF03853.10 169 0.002 11.6 0.0 1 1 2e-05 0.0038 10.6 0.0 7 70 289 353 284 410 0.73 # 31209 # 32504 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_56 - 699 PRK PF00485.13 194 0.0012 12.2 0.0 1 1 1.1e-05 0.0021 11.4 0.0 2 24 522 544 521 575 0.83 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 3_3 - 209 SRP54 PF00448.17 196 4.6e-07 23.2 0.1 1 1 1.5e-08 2.8e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 7_5 - 228 N6_N4_Mtase PF01555.13 231 9.6e-37 120.4 0.0 1 1 1.3e-36 2.5e-34 112.5 0.0 1 228 21 200 21 203 0.92 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 3_15 - 706 AAA_17 PF13207.1 121 1e-07 26.6 0.0 1 1 7.1e-09 2.7e-07 25.3 0.0 1 53 496 551 496 600 0.70 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_56 - 699 AAA_17 PF13207.1 121 9.3e-06 20.3 0.0 1 1 6e-07 2.3e-05 19.0 0.0 2 23 522 543 521 618 0.69 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 3_3 - 209 AAA_17 PF13207.1 121 2.9e-05 18.7 0.0 1 1 2.1e-06 7.7e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_20 - 383 AAA_17 PF13207.1 121 0.00022 15.9 0.0 1 1 1.4e-05 0.00052 14.7 0.0 3 39 161 200 161 251 0.72 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 503 AAA_17 PF13207.1 121 0.00033 15.3 0.2 1 1 2.5e-05 0.00095 13.8 0.1 1 32 231 264 231 367 0.81 # 29174 # 30682 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.545 3_15 - 706 AAA_21 PF13304.1 303 2.4e-09 31.3 0.1 1 1 1.4e-08 1.3e-06 22.3 0.1 2 297 497 661 496 666 0.87 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_56 - 699 AAA_21 PF13304.1 303 1.4e-08 28.7 0.1 1 2 7.6e-08 7.2e-06 19.9 0.0 3 40 523 564 521 586 0.78 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_56 - 699 AAA_21 PF13304.1 303 1.4e-08 28.7 0.1 2 2 0.00092 0.086 6.5 0.0 237 271 630 661 606 666 0.84 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 3_3 - 209 MobB PF03205.9 140 0.00011 15.8 0.1 1 1 3.2e-06 0.0003 14.3 0.0 10 42 11 41 1 46 0.79 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_15 - 706 MobB PF03205.9 140 0.0015 12.0 0.4 1 1 4.5e-05 0.0042 10.6 0.1 2 21 496 515 495 523 0.87 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 3_3 - 209 ArsA_ATPase PF02374.10 305 8.2e-08 25.4 0.9 1 3 1.2e-09 2.2e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_3 - 209 ArsA_ATPase PF02374.10 305 8.2e-08 25.4 0.9 2 3 0.053 10 -1.2 0.0 121 135 69 85 47 86 0.75 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_3 - 209 ArsA_ATPase PF02374.10 305 8.2e-08 25.4 0.9 3 3 0.075 14 -1.7 0.0 205 234 132 161 118 202 0.65 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_20 - 383 PhoH PF02562.11 205 0.00023 14.2 0.0 1 1 2.3e-06 0.00043 13.3 0.0 15 60 153 198 141 230 0.86 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 503 T2SE PF00437.15 272 1.7e-37 122.5 0.0 1 1 4.3e-39 2.7e-37 121.9 0.0 66 269 161 378 97 380 0.87 # 29174 # 30682 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.545 1_20 - 383 T2SE PF00437.15 272 4.6e-35 114.6 0.0 1 1 1.4e-36 8.9e-35 113.6 0.0 106 261 139 292 22 309 0.76 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_56 - 699 T2SE PF00437.15 272 0.00017 14.3 0.0 1 1 4.9e-06 0.00031 13.5 0.0 102 160 492 551 463 555 0.86 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 3_15 - 706 SMC_N PF02463.14 220 9.5e-09 28.5 1.5 1 2 0.0022 0.21 4.6 0.3 26 42 496 512 484 525 0.83 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 3_15 - 706 SMC_N PF02463.14 220 9.5e-09 28.5 1.5 2 2 6.2e-09 5.8e-07 22.7 0.0 136 210 604 674 515 681 0.74 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_56 - 699 SMC_N PF02463.14 220 1.4e-06 21.5 0.0 1 2 0.014 1.3 1.9 0.0 27 44 522 539 509 551 0.83 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_56 - 699 SMC_N PF02463.14 220 1.4e-06 21.5 0.0 2 2 3.4e-07 3.2e-05 17.0 0.0 136 211 629 698 544 698 0.78 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 3_3 - 209 VirC1 PF07015.6 231 6.4e-09 29.0 0.0 1 1 1.4e-10 1.3e-08 27.9 0.0 3 172 2 164 1 206 0.74 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 5_6 - 215 VirC1 PF07015.6 231 0.00076 12.4 0.0 1 2 0.0015 0.14 5.0 0.0 3 29 3 29 1 36 0.81 # 2749 # 3393 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 5_6 - 215 VirC1 PF07015.6 231 0.00076 12.4 0.0 2 2 0.001 0.097 5.5 0.0 87 190 77 181 59 194 0.70 # 2749 # 3393 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 3_3 - 209 Fer4_NifH PF00142.13 273 0.00014 14.9 0.2 1 1 2.3e-06 0.00043 13.3 0.0 8 38 9 39 2 46 0.89 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_20 - 383 AAA_16 PF13191.1 185 1.7e-05 18.7 0.1 1 1 1.4e-06 6.6e-05 16.7 0.0 25 57 158 193 148 326 0.80 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_56 - 699 AAA_16 PF13191.1 185 6.3e-05 16.8 0.0 1 1 3.7e-06 0.00018 15.4 0.0 13 45 509 540 501 568 0.76 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_34 - 503 AAA_16 PF13191.1 185 0.00017 15.4 0.0 1 1 6.9e-06 0.00032 14.5 0.0 23 54 228 259 217 336 0.87 # 29174 # 30682 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.545 3_15 - 706 AAA_16 PF13191.1 185 0.00044 14.0 0.0 1 1 2.1e-05 0.00097 12.9 0.0 24 106 494 586 488 659 0.57 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_20 - 383 AAA_23 PF13476.1 202 5.1e-05 17.5 0.1 1 1 1.7e-06 0.00011 16.4 0.0 20 40 158 178 144 205 0.85 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_56 - 699 AAA_23 PF13476.1 202 9.7e-05 16.5 0.1 1 1 1e-05 0.00063 13.9 0.0 22 43 522 543 512 569 0.86 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_34 - 503 AAA_23 PF13476.1 202 0.00049 14.2 0.0 1 1 1.5e-05 0.00094 13.3 0.0 19 37 229 247 211 262 0.86 # 29174 # 30682 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.545 3_15 - 706 AAA_18 PF13238.1 129 1.1e-05 19.5 1.9 1 1 3.7e-06 0.00017 15.7 0.5 1 20 497 516 497 533 0.77 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_20 - 383 AAA_18 PF13238.1 129 1.2e-05 19.4 0.0 1 1 4.6e-07 2.1e-05 18.6 0.0 2 42 161 197 161 242 0.78 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_56 - 699 AAA_18 PF13238.1 129 0.00042 14.4 0.0 1 1 1.8e-05 0.00083 13.5 0.0 1 23 522 548 522 576 0.77 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_34 - 503 AAA_18 PF13238.1 129 0.0013 12.8 0.2 1 1 6.8e-05 0.0032 11.6 0.2 1 18 232 249 232 267 0.86 # 29174 # 30682 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.545 3_3 - 209 CbiA PF01656.18 195 3.3e-22 72.6 0.0 1 1 6.1e-24 5.8e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 5_6 - 215 CbiA PF01656.18 195 2.3e-09 30.7 0.1 1 1 3.6e-11 3.4e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 2749 # 3393 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_56 - 699 AAA_14 PF13173.1 128 0.00059 13.6 0.0 1 2 2.1e-05 0.0039 10.9 0.0 3 48 520 565 518 587 0.76 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_56 - 699 AAA_14 PF13173.1 128 0.00059 13.6 0.0 2 2 0.076 14 -0.6 0.0 53 93 638 681 630 689 0.67 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_56 - 699 AAA_29 PF13555.1 62 1.3e-05 18.4 0.1 1 1 7.1e-07 3.3e-05 17.2 0.1 17 51 514 547 508 554 0.76 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_34 - 503 AAA_29 PF13555.1 62 3.8e-05 17.0 0.0 1 1 2.1e-06 9.9e-05 15.7 0.0 20 40 227 246 217 262 0.80 # 29174 # 30682 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.545 1_20 - 383 AAA_29 PF13555.1 62 4e-05 16.9 0.0 1 1 2.1e-06 0.0001 15.6 0.0 25 43 159 177 149 185 0.84 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_15 - 706 AAA_29 PF13555.1 62 8.8e-05 15.8 0.4 1 1 6.1e-06 0.00029 14.2 0.1 22 40 493 511 485 524 0.83 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_56 - 699 AAA PF00004.24 132 7.7e-05 16.7 0.1 1 1 1.1e-05 0.002 12.1 0.1 3 74 524 663 522 689 0.72 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_20 - 383 Sigma54_activat PF00158.21 168 0.0012 12.1 0.0 1 1 1.2e-05 0.0022 11.2 0.0 26 46 161 181 145 194 0.82 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_15 - 706 DUF258 PF03193.11 161 4.4e-05 16.5 0.7 1 2 4.4e-06 0.00042 13.3 0.0 26 66 484 525 466 530 0.79 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 3_15 - 706 DUF258 PF03193.11 161 4.4e-05 16.5 0.7 2 2 0.039 3.7 0.5 0.0 23 49 580 606 560 607 0.81 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_56 - 699 DUF258 PF03193.11 161 0.0014 11.7 0.0 1 1 2.8e-05 0.0026 10.7 0.0 34 57 517 541 494 553 0.81 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 2_17 - 767 TraG-D_C PF12696.2 128 3.1e-08 27.4 3.1 1 1 2.1e-10 3.9e-08 27.0 0.2 1 90 437 525 437 558 0.83 # 16692 # 18992 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 3_3 - 209 AAA_31 PF13614.1 157 8.1e-06 19.6 0.0 1 2 2.5e-07 4.7e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_3 - 209 AAA_31 PF13614.1 157 8.1e-06 19.6 0.0 2 2 0.055 10 -0.2 0.0 109 127 68 86 62 113 0.68 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_56 - 699 NTPase_1 PF03266.10 168 0.0012 12.4 0.0 1 1 1.4e-05 0.0027 11.2 0.0 2 24 522 544 521 568 0.83 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_20 - 383 AAA_33 PF13671.1 143 0.00092 12.9 0.1 1 1 1.8e-05 0.0033 11.1 0.0 3 21 161 179 159 194 0.90 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 7_5 - 228 Methyltransf_26 PF13659.1 117 2.8e-11 37.3 0.1 1 2 3.5e-07 6.5e-05 16.8 0.0 57 114 7 71 2 74 0.72 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 7_5 - 228 Methyltransf_26 PF13659.1 117 2.8e-11 37.3 0.1 2 2 1e-07 1.9e-05 18.5 0.0 4 44 167 206 164 222 0.82 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 1_34 - 503 AAA_30 PF13604.1 196 4e-07 23.6 0.0 1 1 8.1e-09 7.6e-07 22.7 0.0 2 45 213 256 212 263 0.90 # 29174 # 30682 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.545 1_56 - 699 AAA_30 PF13604.1 196 0.00036 13.9 0.0 1 1 8.7e-06 0.00082 12.8 0.0 18 50 519 551 510 557 0.82 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_20 - 383 FtsK_SpoIIIE PF01580.13 205 0.0012 12.2 0.0 1 1 1e-05 0.002 11.4 0.0 40 63 159 182 122 227 0.87 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_15 - 706 ABC_tran PF00005.22 137 6.3e-37 120.7 0.1 1 1 2.7e-38 1.3e-36 119.7 0.1 1 137 484 633 484 633 0.89 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_56 - 699 ABC_tran PF00005.22 137 3.7e-34 111.8 0.0 1 1 1.3e-35 6.1e-34 111.1 0.0 3 137 511 658 509 658 0.94 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_20 - 383 ABC_tran PF00005.22 137 4.5e-05 17.6 0.1 1 1 2.6e-06 0.00012 16.2 0.0 15 34 161 180 150 197 0.87 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 503 ABC_tran PF00005.22 137 0.00061 13.9 0.0 1 1 2.4e-05 0.0011 13.1 0.0 13 40 231 258 226 364 0.92 # 29174 # 30682 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.545 7_5 - 228 Cons_hypoth95 PF03602.10 183 2e-05 17.8 0.0 1 2 0.00034 0.063 6.4 0.0 112 148 18 56 9 82 0.66 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 7_5 - 228 Cons_hypoth95 PF03602.10 183 2e-05 17.8 0.0 2 2 3.9e-05 0.0074 9.5 0.0 41 62 162 183 145 219 0.78 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 1_34 - 503 AAA_19 PF13245.1 76 0.00011 15.7 0.8 1 1 4e-06 0.00025 14.6 0.1 4 37 222 256 219 271 0.70 # 29174 # 30682 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.545 1_56 - 699 AAA_19 PF13245.1 76 0.00022 14.8 0.2 1 1 9.6e-06 0.0006 13.4 0.2 7 37 516 545 510 555 0.75 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 3_3 - 209 AAA_19 PF13245.1 76 0.00054 13.5 0.1 1 2 0.00029 0.018 8.6 0.0 20 48 11 35 9 44 0.84 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_3 - 209 AAA_19 PF13245.1 76 0.00054 13.5 0.1 2 2 0.032 2 2.1 0.0 42 63 135 158 118 184 0.76 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_6 - 1015 AAA_10 PF12846.2 304 3.4e-31 102.5 0.0 1 1 2.1e-32 6.7e-31 101.6 0.0 8 303 502 898 498 899 0.89 # 4105 # 7149 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.566 2_17 - 767 AAA_10 PF12846.2 304 4.2e-06 20.2 0.1 1 1 2.7e-07 8.6e-06 19.1 0.1 2 292 137 506 136 516 0.69 # 16692 # 18992 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_20 - 383 AAA_10 PF12846.2 304 9.6e-06 19.0 0.0 1 2 5.7e-06 0.00018 14.8 0.0 3 27 159 183 157 197 0.87 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 383 AAA_10 PF12846.2 304 9.6e-06 19.0 0.0 2 2 0.055 1.7 1.7 0.0 193 248 290 348 259 352 0.76 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 209 AAA_10 PF12846.2 304 0.0003 14.1 0.0 1 1 1.5e-05 0.00047 13.4 0.0 11 39 11 39 3 66 0.90 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_15 - 706 AAA_10 PF12846.2 304 0.00035 13.8 0.1 1 1 8.2e-05 0.0026 11.0 0.0 6 25 499 518 496 531 0.79 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_56 - 699 AAA_10 PF12846.2 304 0.00039 13.7 0.2 1 1 4.9e-05 0.0015 11.7 0.1 3 23 521 541 519 561 0.81 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_56 - 699 SbcCD_C PF13558.1 90 0.00083 13.1 0.1 1 1 5.3e-05 0.005 10.6 0.1 21 80 618 664 603 673 0.71 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 3_15 - 706 SbcCD_C PF13558.1 90 0.001 12.8 0.1 1 1 0.0001 0.0098 9.7 0.1 61 86 620 645 591 649 0.81 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_34 - 503 DEAD PF00270.24 169 0.0013 12.0 0.0 1 1 1.1e-05 0.002 11.4 0.0 2 41 215 256 214 325 0.82 # 29174 # 30682 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.545 2_21 - 283 Methyltransf_27 PF13708.1 194 3.6e-67 219.5 0.0 1 1 2.5e-69 4.8e-67 219.0 0.0 2 194 85 278 84 278 0.96 # 22929 # 23777 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 2_17 - 767 TrwB_AAD_bind PF10412.4 386 5.2e-06 19.0 0.2 1 2 0.00021 0.039 6.3 0.0 11 32 132 153 126 164 0.80 # 16692 # 18992 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 2_17 - 767 TrwB_AAD_bind PF10412.4 386 5.2e-06 19.0 0.2 2 2 1.4e-05 0.0026 10.2 0.1 261 332 453 525 437 578 0.74 # 16692 # 18992 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 7_5 - 228 MethyltransfD12 PF02086.10 260 0.00088 12.5 0.0 1 2 0.019 3.5 0.7 0.0 175 188 18 31 8 70 0.84 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 7_5 - 228 MethyltransfD12 PF02086.10 260 0.00088 12.5 0.0 2 2 4e-05 0.0075 9.5 0.0 20 46 163 189 148 197 0.78 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 3_15 - 706 ArgK PF03308.11 267 0.00045 12.8 0.0 1 1 4.4e-06 0.00083 11.9 0.0 15 52 480 517 472 527 0.84 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 6_1 - 696 Plug PF07715.10 108 6.7e-31 100.7 2.6 1 1 4.6e-32 4.3e-30 98.1 1.1 3 108 39 151 37 151 0.91 # 381 # 2468 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.502 5_18 - 656 Plug PF07715.10 108 7.5e-24 78.0 1.7 1 1 2e-25 1.9e-23 76.7 1.7 3 108 45 148 43 148 0.94 # 10755 # 12722 # 1 # ID=5_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 1_20 - 383 RNA_helicase PF00910.17 107 7.5e-05 16.7 0.0 1 1 1.7e-06 0.00016 15.7 0.0 2 28 161 187 160 202 0.83 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_15 - 706 RNA_helicase PF00910.17 107 0.0021 12.0 0.8 1 2 0.00054 0.051 7.6 0.0 3 19 499 515 497 529 0.86 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 3_15 - 706 RNA_helicase PF00910.17 107 0.0021 12.0 0.8 2 2 0.036 3.4 1.7 0.1 48 104 621 675 617 677 0.77 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_49 - 214 TIGR00922 TIGR00922 172 0.00056 13.3 0.0 1 1 3.6e-06 0.00068 13.0 0.0 54 104 105 155 57 176 0.87 # 41912 # 42553 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_20 - 383 NACHT PF05729.7 166 0.0018 11.7 0.0 1 1 1.8e-05 0.0034 10.8 0.0 4 27 161 184 159 193 0.84 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 383 AAA_25 PF13481.1 194 9.2e-07 22.2 0.0 1 1 3.9e-08 1.5e-06 21.6 0.0 21 73 146 196 127 236 0.80 # 18603 # 19751 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 209 AAA_25 PF13481.1 194 0.00022 14.4 0.1 1 1 1.5e-05 0.00058 13.1 0.0 42 87 10 44 3 90 0.78 # 611 # 1237 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_56 - 699 AAA_25 PF13481.1 194 0.00033 13.9 0.0 1 1 1.6e-05 0.00061 13.0 0.0 30 55 516 541 494 612 0.80 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 3_15 - 706 AAA_25 PF13481.1 194 0.00039 13.6 0.0 1 1 0.00012 0.0044 10.2 0.0 29 50 490 511 481 531 0.88 # 9983 # 12100 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_34 - 503 AAA_25 PF13481.1 194 0.0016 11.6 0.0 1 1 0.00011 0.0042 10.3 0.0 20 64 215 260 203 273 0.77 # 29174 # 30682 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.545 7_5 - 228 Methyltransf_15 PF09445.5 164 0.0015 11.9 0.0 1 2 0.042 7.9 -0.2 0.0 53 79 4 29 2 33 0.90 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 7_5 - 228 Methyltransf_15 PF09445.5 164 0.0015 11.9 0.0 2 2 4.3e-05 0.0082 9.5 0.0 3 31 166 194 164 208 0.86 # 2133 # 2816 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 1_56 - 699 AAA_28 PF13521.1 163 0.0005 13.9 0.2 1 1 4.9e-06 0.00092 13.0 0.2 2 19 522 539 521 552 0.91 # 48625 # 50721 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/75f0da71-7c4a-45b4-955b-0fcb763bf592 # Target file: checkm_output/bins/pm1620/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1620/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/75f0da71-7c4a-45b4-955b-0fcb763bf592 checkm_output/bins/pm1620/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:48 2020 # [ok]