# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 5_4 - 188 Methyltransf_12 PF08242.7 99 1.6e-05 18.1 0.0 1 1 3.1e-07 2.9e-05 17.3 0.0 1 99 55 144 55 144 0.87 # 2026 # 2589 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 5_4 - 188 UPF0020 PF01170.13 180 0.00081 11.8 0.0 1 1 2.9e-05 0.0027 10.1 0.0 18 43 40 65 32 130 0.71 # 2026 # 2589 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 5_4 - 188 RrnaAD PF00398.15 262 1e-08 27.3 0.0 1 1 1.4e-10 1.3e-08 26.9 0.0 9 113 29 128 24 148 0.87 # 2026 # 2589 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_8 - 176 SSB PF00436.20 104 2.2e-41 132.8 0.4 1 1 3.4e-43 3.1e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 4473 # 5000 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 5_4 - 188 Methyltransf_18 PF12847.2 112 1.7e-10 34.3 0.0 1 1 3.9e-12 3.6e-10 33.3 0.0 4 109 53 146 50 148 0.90 # 2026 # 2589 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_15 - 1757 UvrD_C_2 PF13538.1 104 1.2e-06 21.4 0.7 1 2 0.013 1.2 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 9613 # 14883 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_15 - 1757 UvrD_C_2 PF13538.1 104 1.2e-06 21.4 0.7 2 2 5.3e-07 4.9e-05 16.3 0.2 3 102 1341 1444 1339 1446 0.77 # 9613 # 14883 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_36 - 671 DUF87 PF01935.12 229 1.7e-06 20.7 0.1 1 1 6.7e-08 6.3e-06 18.9 0.0 26 153 483 606 469 634 0.68 # 32024 # 34036 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_6 - 156 N6_N4_Mtase PF01555.13 231 8.7e-11 34.5 0.0 1 1 1.1e-12 9.9e-11 34.3 0.0 1 90 21 101 21 130 0.85 # 4242 # 4709 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_17 - 674 AAA_17 PF13207.1 121 0.00027 14.6 0.0 1 1 9e-06 0.00083 13.0 0.0 3 27 189 217 187 282 0.70 # 15142 # 17163 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_36 - 671 MobB PF03205.9 140 0.00078 12.0 0.0 1 1 2e-05 0.0018 10.8 0.0 4 37 484 516 482 524 0.79 # 32024 # 34036 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_17 - 674 AAA_16 PF13191.1 185 3.3e-06 20.0 0.0 1 1 3.6e-07 1.7e-05 17.7 0.0 21 60 182 222 179 264 0.81 # 15142 # 17163 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_41 - 123 AAA_16 PF13191.1 185 0.0013 11.6 0.1 1 1 4.6e-05 0.0021 10.8 0.1 22 48 86 112 80 119 0.88 # 36172 # 36540 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 5_4 - 188 Methyltransf_25 PF13649.1 101 0.00011 15.3 0.0 1 1 1.8e-06 0.00017 14.8 0.0 1 101 54 142 54 142 0.81 # 2026 # 2589 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_17 - 674 TraG-D_C PF12696.2 128 5e-21 67.7 0.0 1 1 1.2e-22 1.1e-20 66.6 0.0 1 127 419 541 419 542 0.86 # 15142 # 17163 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_41 - 123 KTI12 PF08433.5 270 0.00079 11.4 0.1 1 1 1.4e-05 0.0013 10.7 0.1 5 30 92 117 91 120 0.87 # 36172 # 36540 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 5_4 - 188 Methyltransf_26 PF13659.1 117 4.4e-14 45.4 0.0 1 1 1.6e-15 7.4e-14 44.6 0.0 2 114 52 147 51 150 0.90 # 2026 # 2589 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_6 - 156 Methyltransf_26 PF13659.1 117 4.2e-07 22.8 0.0 1 1 3.1e-08 1.5e-06 21.1 0.0 54 114 4 71 2 74 0.73 # 4242 # 4709 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_15 - 1757 AAA_30 PF13604.1 196 1.6e-44 144.6 15.6 1 3 0.02 1.9 0.8 0.0 41 86 223 269 218 282 0.84 # 9613 # 14883 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_15 - 1757 AAA_30 PF13604.1 196 1.6e-44 144.6 15.6 2 3 9.6e-06 0.00089 11.6 3.9 7 146 420 551 416 561 0.81 # 9613 # 14883 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_15 - 1757 AAA_30 PF13604.1 196 1.6e-44 144.6 15.6 3 3 4.9e-44 4.6e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 9613 # 14883 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_36 - 671 FtsK_SpoIIIE PF01580.13 205 8.6e-06 18.1 0.1 1 2 1.5e-06 0.00014 14.2 0.0 39 63 477 505 464 508 0.84 # 32024 # 34036 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_36 - 671 FtsK_SpoIIIE PF01580.13 205 8.6e-06 18.1 0.1 2 2 0.012 1.1 1.4 0.0 75 166 531 626 530 633 0.78 # 32024 # 34036 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 5_4 - 188 MTS PF05175.9 170 8.1e-10 31.1 0.0 1 1 1.2e-11 1.1e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 2026 # 2589 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 5_4 - 188 Methyltrans_SAM PF10672.4 286 0.00067 11.3 0.0 1 1 9.9e-06 0.00092 10.9 0.0 196 261 113 173 93 180 0.78 # 2026 # 2589 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 5_4 - 188 Met_10 PF02475.11 200 0.00081 11.8 0.0 1 1 1.1e-05 0.001 11.4 0.0 98 189 47 132 29 145 0.78 # 2026 # 2589 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_15 - 1757 AAA_19 PF13245.1 76 1.7e-07 23.8 2.0 1 1 1.1e-08 5.2e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 9613 # 14883 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_41 - 123 AAA_19 PF13245.1 76 0.00063 12.3 0.0 1 1 2.2e-05 0.001 11.7 0.0 13 37 91 115 82 122 0.78 # 36172 # 36540 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_36 - 671 AAA_10 PF12846.2 304 5.5e-22 71.3 0.0 1 1 3.7e-23 1.1e-21 70.2 0.0 1 170 480 642 480 647 0.85 # 32024 # 34036 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_35 - 225 AAA_10 PF12846.2 304 5.8e-22 71.2 0.0 1 1 2.5e-23 7.8e-22 70.8 0.0 181 294 1 117 1 123 0.95 # 31407 # 32081 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_17 - 674 AAA_10 PF12846.2 304 1e-10 34.3 0.0 1 1 7.4e-11 2.3e-09 29.8 0.0 3 296 187 494 186 500 0.68 # 15142 # 17163 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 5_4 - 188 Methyltransf_31 PF13847.1 152 3.2e-07 22.9 0.0 1 1 4.2e-09 3.9e-07 22.6 0.0 5 119 52 162 48 183 0.84 # 2026 # 2589 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_17 - 674 TrwB_AAD_bind PF10412.4 386 2.5e-150 493.1 0.0 1 1 7.1e-152 3.3e-150 492.7 0.0 2 386 172 561 171 561 0.99 # 15142 # 17163 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_36 - 671 TrwB_AAD_bind PF10412.4 386 1e-06 20.4 0.0 1 1 3.4e-08 1.6e-06 19.7 0.0 15 53 480 518 471 548 0.80 # 32024 # 34036 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_15 - 1757 AAA_11 PF13086.1 236 0.00019 13.8 0.0 1 1 2.1e-06 0.00019 13.8 0.0 2 75 969 1039 968 1059 0.81 # 9613 # 14883 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_17 - 674 T4SS-DNA_transf PF02534.9 469 5.2e-10 31.2 0.0 1 1 1.6e-11 1.5e-09 29.7 0.0 264 361 382 476 198 500 0.82 # 15142 # 17163 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 5_4 - 188 TIGR00755 TIGR00755 256 3.4e-09 28.8 0.0 1 1 4.9e-11 4.5e-09 28.4 0.0 8 105 29 123 25 134 0.91 # 2026 # 2589 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_36 - 671 Pox_A32 PF04665.7 241 0.00047 12.3 0.0 1 1 1.7e-05 0.0016 10.6 0.0 7 38 474 505 470 520 0.85 # 32024 # 34036 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c962b1d9-d6db-4817-9dc5-5b8f099bebf7 # Target file: checkm_output/bins/pm162/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm162/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c962b1d9-d6db-4817-9dc5-5b8f099bebf7 checkm_output/bins/pm162/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:47 2020 # [ok]