# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_88 - 262 Mg_chelatase PF01078.16 207 0.00046 12.1 0.0 1 1 1.1e-05 0.00098 11.1 0.0 23 43 100 120 96 153 0.86 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 IstB_IS21 PF01695.12 178 2.8e-69 224.8 0.1 1 1 4.1e-71 3.7e-69 224.4 0.1 2 177 55 230 54 231 0.98 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_48 - 145 SSB PF00436.20 104 6.6e-32 102.3 0.2 1 1 8.4e-34 7.6e-32 102.1 0.2 2 103 7 111 6 112 0.96 # 28121 # 28555 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_57 - 388 DUF87 PF01935.12 229 8.5e-05 15.2 0.0 1 1 1.8e-06 0.00017 14.2 0.0 28 45 157 174 155 188 0.89 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_88 - 262 AAA_22 PF13401.1 131 2.5e-06 20.5 0.1 1 2 8.3e-06 0.00025 14.0 0.2 2 28 97 123 96 159 0.74 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 AAA_22 PF13401.1 131 2.5e-06 20.5 0.1 2 2 0.0062 0.19 4.7 0.0 87 117 151 196 132 204 0.62 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_57 - 388 AAA_22 PF13401.1 131 3.8e-06 19.9 0.0 1 1 2.9e-07 8.8e-06 18.7 0.0 4 30 152 178 149 243 0.84 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_70 - 1017 AAA_22 PF13401.1 131 0.00035 13.5 0.0 1 1 3.5e-05 0.0011 11.9 0.0 8 69 492 557 486 594 0.67 # 45649 # 48699 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_57 - 388 ATP_bind_1 PF03029.12 238 0.00074 11.8 0.0 1 1 1.3e-05 0.0012 11.2 0.0 1 25 157 181 157 191 0.84 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_88 - 262 AAA_3 PF07726.6 131 0.00047 12.6 0.0 1 1 1.2e-05 0.0011 11.4 0.0 2 72 102 171 101 201 0.70 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_70 - 1017 AAA_17 PF13207.1 121 4.1e-05 17.2 0.0 1 1 5.8e-06 0.00026 14.6 0.0 3 28 492 523 492 587 0.67 # 45649 # 48699 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_88 - 262 AAA_17 PF13207.1 121 0.0001 15.9 0.0 1 1 3.1e-06 0.00014 15.4 0.0 2 38 102 133 101 232 0.74 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_57 - 388 Miro PF08477.8 119 0.00086 12.6 0.0 1 1 2.1e-05 0.0019 11.5 0.0 4 28 157 186 156 220 0.72 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_57 - 388 MobB PF03205.9 140 0.00048 12.6 0.0 1 1 1e-05 0.00095 11.7 0.0 4 25 156 177 154 190 0.85 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_88 - 262 PhoH PF02562.11 205 1.1e-08 27.2 0.1 1 1 2.9e-10 2.7e-08 26.0 0.1 3 61 83 142 81 179 0.77 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 MCM PF00493.18 331 0.00019 13.1 0.0 1 2 7.5e-06 0.00068 11.2 0.0 56 120 98 162 82 172 0.81 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 MCM PF00493.18 331 0.00019 13.1 0.0 2 2 0.034 3.1 -0.8 0.0 161 211 190 237 186 259 0.71 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_57 - 388 T2SE PF00437.15 272 2e-23 75.4 0.0 1 1 3.4e-25 3.1e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_57 - 388 SMC_N PF02463.14 220 0.00092 11.2 0.0 1 1 1.8e-05 0.0016 10.4 0.0 25 50 153 178 146 195 0.81 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_88 - 262 AAA_16 PF13191.1 185 0.00013 14.7 0.1 1 1 6.8e-06 0.00031 13.5 0.1 23 51 98 126 84 166 0.79 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_57 - 388 AAA_16 PF13191.1 185 0.00058 12.6 0.0 1 1 2.5e-05 0.0011 11.7 0.0 25 50 153 178 141 211 0.84 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_57 - 388 AAA_23 PF13476.1 202 2.2e-06 20.9 0.8 1 1 3.9e-08 3.5e-06 20.2 0.2 19 44 152 177 122 198 0.85 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_70 - 1017 AAA_18 PF13238.1 129 5e-05 16.4 0.1 1 1 4.2e-06 0.00038 13.6 0.0 2 19 492 509 492 562 0.79 # 45649 # 48699 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_57 - 388 KaiC PF06745.8 227 0.0007 11.5 0.0 1 1 1.4e-05 0.0012 10.7 0.0 11 59 144 191 137 201 0.76 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_57 - 388 AAA_29 PF13555.1 62 7.7e-06 18.2 0.1 1 1 4.1e-07 1.9e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_88 - 262 AAA_29 PF13555.1 62 1.2e-05 17.5 0.0 1 1 5.6e-07 2.6e-05 16.5 0.0 5 47 80 125 78 136 0.83 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 AAA PF00004.24 132 9.4e-08 25.1 0.0 1 1 1.8e-09 1.6e-07 24.4 0.0 1 111 102 202 102 230 0.70 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 Bac_DnaA PF00308.13 219 1.2e-10 34.2 0.0 1 1 2.1e-12 1.9e-10 33.5 0.0 36 136 101 199 80 221 0.87 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_57 - 388 Ribosomal_S5 PF00333.15 67 2.9e-05 16.6 0.1 1 2 0.00093 0.084 5.5 0.0 26 45 84 103 77 114 0.83 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_57 - 388 Ribosomal_S5 PF00333.15 67 2.9e-05 16.6 0.1 2 2 0.00012 0.011 8.4 0.0 21 54 242 274 230 278 0.91 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_1 - 696 TraG-D_C PF12696.2 128 0.00012 14.7 0.1 1 1 2.4e-06 0.00022 13.9 0.1 3 94 437 524 435 556 0.78 # 511 # 2598 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_88 - 262 AAA_33 PF13671.1 143 0.00033 13.3 0.2 1 1 8.9e-06 0.00081 12.1 0.2 2 36 102 142 102 255 0.67 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 KTI12 PF08433.5 270 0.00016 13.7 0.4 1 2 6.4e-05 0.0058 8.6 0.0 4 81 102 172 101 174 0.68 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 KTI12 PF08433.5 270 0.00016 13.7 0.4 2 2 0.0037 0.33 2.8 0.1 34 59 232 257 212 261 0.77 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 DnaB_C PF03796.10 259 0.00014 13.6 0.0 1 1 2.4e-06 0.00022 12.9 0.0 16 55 96 135 85 158 0.90 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 AAA_30 PF13604.1 196 0.00043 12.7 0.2 1 2 1.4e-05 0.0013 11.1 0.1 16 49 97 131 87 162 0.73 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 AAA_30 PF13604.1 196 0.00043 12.7 0.2 2 2 0.069 6.3 -0.9 0.0 86 104 149 172 117 179 0.62 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_57 - 388 FtsK_SpoIIIE PF01580.13 205 9.6e-05 14.7 0.0 1 1 2.1e-06 0.00019 13.7 0.0 41 59 155 173 135 184 0.85 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_57 - 388 ABC_tran PF00005.22 137 0.00011 15.4 0.0 1 1 2.2e-06 0.0002 14.5 0.0 15 33 156 174 147 217 0.82 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_88 - 262 RuvB_N PF05496.7 234 0.00048 12.0 0.0 1 1 7.1e-06 0.00065 11.5 0.0 48 75 97 124 45 170 0.84 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 AAA_19 PF13245.1 76 3.4e-07 22.8 0.0 1 1 1.9e-08 8.9e-07 21.4 0.0 11 37 101 126 95 147 0.81 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_70 - 1017 AAA_19 PF13245.1 76 0.00034 13.2 0.0 1 1 2.3e-05 0.0011 11.6 0.0 14 32 492 509 481 523 0.86 # 45649 # 48699 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_70 - 1017 AAA_10 PF12846.2 304 6.9e-42 136.6 0.0 1 1 4.6e-43 1.4e-41 135.6 0.0 5 297 492 884 489 889 0.94 # 45649 # 48699 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_1 - 696 AAA_10 PF12846.2 304 5.7e-10 31.8 0.0 1 1 2.8e-11 8.5e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 511 # 2598 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_57 - 388 AAA_10 PF12846.2 304 1.1e-06 21.0 0.0 1 1 2.1e-07 6.4e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_70 - 1017 DUF2075 PF09848.4 352 0.00034 12.4 0.0 1 1 1e-05 0.00096 10.9 0.0 5 22 492 509 489 526 0.84 # 45649 # 48699 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_88 - 262 DUF815 PF05673.8 250 0.0002 13.1 0.0 1 1 3.6e-06 0.00033 12.4 0.0 23 76 65 122 46 139 0.79 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_38 - 287 Methyltransf_27 PF13708.1 194 5.5e-69 224.3 0.0 1 1 1e-70 9.3e-69 223.6 0.0 2 194 89 282 88 282 0.98 # 23592 # 24452 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_1 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 1 3 1.7e-05 0.0016 9.8 0.0 16 36 134 154 125 158 0.88 # 511 # 2598 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_1 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 2 3 9.3e-05 0.0085 7.4 0.1 93 140 235 281 229 303 0.80 # 511 # 2598 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_1 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 3 3 0.083 7.5 -2.3 0.0 293 323 482 512 405 546 0.58 # 511 # 2598 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_88 - 262 AAA_11 PF13086.1 236 0.00041 12.7 0.3 1 1 8.7e-06 0.00079 11.8 0.3 6 44 89 142 82 260 0.72 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 Sigma54_activ_2 PF14532.1 138 0.00027 13.8 0.1 1 1 7.7e-06 0.0007 12.4 0.0 3 44 79 122 77 151 0.81 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_57 - 388 GTP_EFTU PF00009.22 188 0.00099 11.3 0.0 1 1 2e-05 0.0018 10.5 0.0 8 34 157 183 155 195 0.87 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_57 - 388 RNA_helicase PF00910.17 107 0.001 12.1 0.0 1 1 2.5e-05 0.0023 10.9 0.0 3 26 157 180 156 197 0.81 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_57 - 388 NACHT PF05729.7 166 0.00031 13.2 0.0 1 1 1.3e-05 0.0006 12.3 0.0 4 29 156 181 154 188 0.83 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_88 - 262 NACHT PF05729.7 166 0.0011 11.4 2.1 1 2 0.00012 0.0054 9.2 0.3 3 23 102 122 100 148 0.84 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 NACHT PF05729.7 166 0.0011 11.4 2.1 2 2 0.023 1.1 1.7 0.1 80 127 156 200 139 221 0.76 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_57 - 388 AAA_25 PF13481.1 194 5.1e-06 18.8 0.0 1 1 2.3e-07 1e-05 17.8 0.0 25 53 144 172 122 178 0.89 # 34318 # 35481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_88 - 262 AAA_25 PF13481.1 194 9.9e-05 14.6 0.0 1 1 3.6e-06 0.00016 13.8 0.0 29 57 95 123 76 170 0.86 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 AAA_28 PF13521.1 163 8.1e-06 18.6 1.1 1 1 4.6e-07 4.2e-05 16.3 0.8 1 24 101 124 101 239 0.90 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 262 AAA_5 PF07728.9 139 0.00017 14.1 0.2 1 1 4.3e-06 0.00039 12.9 0.2 1 19 101 119 101 243 0.78 # 67210 # 67995 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/05b5fc4c-e97d-43c7-bf0c-78dcd3280d8f # Target file: checkm_output/bins/pm1614/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1614/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/05b5fc4c-e97d-43c7-bf0c-78dcd3280d8f checkm_output/bins/pm1614/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:45 2020 # [ok]