# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 228 UPF0020 PF01170.13 180 3.7e-05 15.8 0.0 1 2 0.00042 0.031 6.3 0.0 103 117 17 31 4 86 0.79 # 10347 # 11030 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_11 - 228 UPF0020 PF01170.13 180 3.7e-05 15.8 0.0 2 2 0.00016 0.012 7.6 0.0 28 54 163 189 158 220 0.72 # 10347 # 11030 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_6 - 209 MipZ PF09140.6 261 1.4e-21 69.2 0.5 1 2 1.2e-12 8.7e-11 33.8 0.0 2 53 2 52 1 60 0.89 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_6 - 209 MipZ PF09140.6 261 1.4e-21 69.2 0.5 2 2 1.6e-12 1.2e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_6 - 209 YhjQ PF06564.7 244 1.7e-05 16.7 0.3 1 2 1.8e-06 0.00013 13.8 0.3 4 38 3 37 1 50 0.89 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_6 - 209 YhjQ PF06564.7 244 1.7e-05 16.7 0.3 2 2 0.029 2.1 0.0 0.0 108 144 69 103 44 113 0.78 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_18 - 455 SSB PF00436.20 104 1.7e-06 20.4 0.0 1 1 4.8e-08 3.5e-06 19.4 0.0 1 34 6 39 6 53 0.81 # 14785 # 16149 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 2_20 - 518 AAA_22 PF13401.1 131 0.00022 13.9 0.0 1 1 6.5e-06 0.00047 12.8 0.0 6 28 227 249 222 330 0.78 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_6 - 209 SRP54 PF00448.17 196 1.8e-07 23.2 0.1 1 1 1.5e-08 1.1e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_11 - 228 N6_N4_Mtase PF01555.13 231 2.2e-37 121.2 0.0 1 2 5.1e-16 3.7e-14 45.2 0.0 1 114 21 124 21 133 0.91 # 10347 # 11030 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_11 - 228 N6_N4_Mtase PF01555.13 231 2.2e-37 121.2 0.0 2 2 6.4e-25 4.6e-23 74.3 0.0 169 228 141 200 126 203 0.90 # 10347 # 11030 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_6 - 209 AAA_17 PF13207.1 121 1.1e-05 18.7 0.0 1 1 8.2e-07 3e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 2_20 - 518 AAA_17 PF13207.1 121 2e-05 17.9 0.1 1 1 2.2e-06 8.2e-05 15.9 0.0 1 23 227 249 227 342 0.74 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_6 - 209 MobB PF03205.9 140 4.2e-05 15.8 0.1 1 1 1.6e-06 0.00012 14.3 0.0 10 42 11 41 1 46 0.79 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_6 - 209 ArsA_ATPase PF02374.10 305 3.2e-08 25.4 0.9 1 3 1.2e-09 8.5e-08 24.0 0.1 3 48 3 48 1 69 0.85 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_6 - 209 ArsA_ATPase PF02374.10 305 3.2e-08 25.4 0.9 2 3 0.053 3.9 -1.2 0.0 121 135 69 85 47 86 0.75 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_6 - 209 ArsA_ATPase PF02374.10 305 3.2e-08 25.4 0.9 3 3 0.075 5.5 -1.7 0.0 205 234 132 161 118 202 0.65 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 2_20 - 518 T2SE PF00437.15 272 7.9e-42 135.4 0.1 1 1 2.7e-43 2e-41 134.1 0.0 10 271 97 373 90 374 0.85 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_20 - 518 G-alpha PF00503.15 389 0.0005 11.2 0.0 1 2 0.069 5.1 -2.0 0.0 234 272 70 113 51 117 0.81 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_20 - 518 G-alpha PF00503.15 389 0.0005 11.2 0.0 2 2 1.9e-05 0.0014 9.7 0.0 58 87 225 254 214 313 0.83 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_6 - 209 VirC1 PF07015.6 231 2.5e-09 29.0 0.0 1 1 7.1e-11 5.2e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_6 - 209 Fer4_NifH PF00142.13 273 5.4e-05 14.9 0.2 1 1 2.3e-06 0.00017 13.3 0.0 8 38 9 39 2 46 0.89 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 2_20 - 518 AAA_16 PF13191.1 185 4.8e-05 15.8 0.0 1 1 2.3e-06 0.00017 14.1 0.0 8 52 213 254 212 330 0.81 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_20 - 518 AAA_23 PF13476.1 202 0.00013 14.8 0.1 1 1 5.5e-06 0.0004 13.2 0.0 20 38 226 244 209 249 0.86 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_20 - 518 AAA_18 PF13238.1 129 0.00025 13.8 0.0 1 1 1.1e-05 0.0008 12.2 0.0 1 18 228 245 228 312 0.86 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_6 - 209 CbiA PF01656.18 195 1.3e-22 72.6 0.0 1 1 3.1e-24 2.2e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 2_20 - 518 AAA_29 PF13555.1 62 2e-05 16.6 0.0 1 1 5.4e-07 3.9e-05 15.6 0.0 21 40 224 242 216 254 0.83 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_20 - 518 AAA PF00004.24 132 0.00055 12.6 0.0 1 3 0.057 4.1 0.1 0.0 38 57 81 100 50 113 0.80 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_20 - 518 AAA PF00004.24 132 0.00055 12.6 0.0 2 3 0.00033 0.024 7.3 0.0 1 21 228 248 228 277 0.83 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_20 - 518 AAA PF00004.24 132 0.00055 12.6 0.0 3 3 0.049 3.6 0.3 0.0 9 66 442 508 436 515 0.61 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_33 - 764 TraG-D_C PF12696.2 128 3.8e-07 22.5 0.2 1 1 1.2e-08 8.6e-07 21.4 0.2 1 88 437 524 437 554 0.82 # 27612 # 29903 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_6 - 209 AAA_31 PF13614.1 157 3.1e-06 19.6 0.0 1 2 2.5e-07 1.8e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_6 - 209 AAA_31 PF13614.1 157 3.1e-06 19.6 0.0 2 2 0.055 4 -0.2 0.0 109 127 68 86 62 113 0.68 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_11 - 228 Methyltransf_26 PF13659.1 117 1.6e-11 36.8 0.1 1 2 3.5e-07 2.5e-05 16.8 0.0 57 114 7 71 2 74 0.72 # 10347 # 11030 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_11 - 228 Methyltransf_26 PF13659.1 117 1.6e-11 36.8 0.1 2 2 1.4e-07 1.1e-05 18.0 0.0 4 44 167 206 164 222 0.82 # 10347 # 11030 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_20 - 518 AAA_30 PF13604.1 196 0.00013 14.0 0.0 1 1 3.2e-06 0.00023 13.2 0.0 4 44 211 251 209 280 0.86 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_11 - 195 DNA_pol3_delta PF06144.8 172 1.5e-06 20.3 0.0 1 1 3e-08 2.2e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 6987 # 7571 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 2_20 - 518 ABC_tran PF00005.22 137 6.1e-05 15.8 0.0 1 1 2.2e-06 0.00016 14.5 0.0 12 40 226 255 216 298 0.81 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_11 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 16.9 0.0 1 2 0.00035 0.026 6.4 0.0 112 147 18 55 9 82 0.66 # 10347 # 11030 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_11 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 16.9 0.0 2 2 7e-05 0.0051 8.6 0.0 41 62 162 183 145 219 0.78 # 10347 # 11030 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_20 - 518 DAP3 PF10236.4 309 0.00046 11.6 0.0 1 1 1.2e-05 0.00087 10.7 0.0 21 42 223 244 214 253 0.86 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_20 - 518 AAA_19 PF13245.1 76 7.2e-05 15.0 0.0 1 1 5.3e-06 0.00019 13.6 0.0 10 46 226 259 218 270 0.79 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_6 - 209 AAA_19 PF13245.1 76 0.00021 13.5 0.1 1 2 0.00019 0.007 8.6 0.0 20 48 11 35 9 44 0.84 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_6 - 209 AAA_19 PF13245.1 76 0.00021 13.5 0.1 2 2 0.021 0.78 2.1 0.0 42 63 135 158 118 184 0.76 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_33 - 764 AAA_10 PF12846.2 304 1.9e-05 16.6 1.0 1 1 2.4e-06 5.7e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 27612 # 29903 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_6 - 209 AAA_10 PF12846.2 304 0.00011 14.1 0.0 1 1 7.6e-06 0.00018 13.4 0.0 11 39 11 39 3 66 0.90 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 2_20 - 518 AAA_10 PF12846.2 304 0.00016 13.6 0.0 1 1 1.3e-05 0.00031 12.7 0.0 4 30 228 256 226 304 0.78 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_29 - 283 Methyltransf_27 PF13708.1 194 2e-67 219.0 0.0 1 1 3.6e-69 2.6e-67 218.5 0.0 2 194 85 278 84 278 0.96 # 23028 # 23876 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_33 - 764 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.3 0.2 1 2 9.3e-05 0.0068 7.4 0.0 11 32 132 153 126 157 0.84 # 27612 # 29903 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_33 - 764 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.3 0.2 2 2 3e-05 0.0022 9.0 0.1 247 332 440 525 427 555 0.88 # 27612 # 29903 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_6 - 209 AAA_25 PF13481.1 194 8.5e-05 14.4 0.1 1 1 6.2e-06 0.00023 13.1 0.0 42 87 10 44 3 90 0.78 # 5875 # 6501 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 2_20 - 518 AAA_25 PF13481.1 194 0.00021 13.1 0.0 1 2 7.5e-05 0.0027 9.5 0.0 19 65 211 260 200 270 0.72 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_20 - 518 AAA_25 PF13481.1 194 0.00021 13.1 0.0 2 2 0.046 1.7 0.4 0.0 153 190 297 337 292 340 0.73 # 15683 # 17236 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/55fb207c-488b-44ba-a06e-579434fbc695 # Target file: checkm_output/bins/pm1612/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1612/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/55fb207c-488b-44ba-a06e-579434fbc695 checkm_output/bins/pm1612/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:43 2020 # [ok]