# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 228 UPF0020 PF01170.13 180 9.2e-05 15.8 0.0 1 2 0.00042 0.077 6.3 0.0 103 117 17 31 4 86 0.79 # 5504 # 6187 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 228 UPF0020 PF01170.13 180 9.2e-05 15.8 0.0 2 2 0.00016 0.03 7.6 0.0 28 54 163 189 158 220 0.72 # 5504 # 6187 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_5 - 232 cobW PF02492.14 178 0.00092 12.4 0.0 1 1 1.7e-05 0.0015 11.7 0.0 3 21 39 57 37 80 0.85 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 9_3 - 341 cobW PF02492.14 178 0.0015 11.8 0.0 1 1 2.8e-05 0.0025 11.0 0.0 4 30 5 31 3 53 0.72 # 563 # 1585 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_16 - 119 RrnaAD PF00398.15 262 1.3e-05 18.0 0.0 1 1 9.1e-08 1.7e-05 17.7 0.0 9 73 29 95 23 104 0.92 # 11889 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_2 - 389 MipZ PF09140.6 261 7.9e-06 18.8 0.4 1 2 3.5e-06 0.00064 12.6 0.0 2 47 108 153 107 157 0.87 # 1342 # 2508 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_2 - 389 MipZ PF09140.6 261 7.9e-06 18.8 0.4 2 2 0.0011 0.21 4.4 0.0 88 134 224 270 197 292 0.84 # 1342 # 2508 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_20 - 151 SSB PF00436.20 104 1.8e-27 89.0 0.6 1 1 1.3e-29 2.3e-27 88.7 0.6 26 101 2 80 1 83 0.93 # 16076 # 16528 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.605 1_16 - 119 Methyltransf_18 PF12847.2 112 0.00017 15.9 0.0 1 1 2.4e-06 0.00045 14.6 0.0 5 46 54 95 50 113 0.87 # 11889 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.577 6_2 - 1703 UvrD_C_2 PF13538.1 104 2.6e-07 24.6 0.7 1 2 0.025 2.3 2.2 0.0 6 44 1223 1261 1219 1291 0.74 # 123 # 5231 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 6_2 - 1703 UvrD_C_2 PF13538.1 104 2.6e-07 24.6 0.7 2 2 1e-07 9.2e-06 19.6 0.2 3 102 1337 1440 1335 1442 0.77 # 123 # 5231 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 9_3 - 341 UvrD_C_2 PF13538.1 104 0.00014 15.8 0.0 1 1 3e-06 0.00028 14.8 0.0 37 103 247 329 224 330 0.65 # 563 # 1585 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_44 - 876 DUF87 PF01935.12 229 2.1e-07 24.7 0.0 1 1 6.5e-09 6e-07 23.2 0.0 26 222 482 669 468 676 0.77 # 30771 # 33398 # 1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_5 - 232 DUF87 PF01935.12 229 0.00041 13.9 0.0 1 2 3.4e-05 0.0031 11.1 0.1 26 44 39 57 21 59 0.91 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 DUF87 PF01935.12 229 0.00041 13.9 0.0 2 2 0.054 4.9 0.6 0.0 136 184 128 196 95 215 0.65 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 NB-ARC PF00931.17 287 0.0011 11.6 0.1 1 1 9.7e-06 0.0018 10.9 0.1 18 37 35 54 24 65 0.87 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_22 PF13401.1 131 4.3e-05 17.4 0.7 1 1 5.1e-06 0.00031 14.7 0.7 3 25 35 57 31 207 0.82 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 9_3 - 341 AAA_22 PF13401.1 131 6.1e-05 16.9 0.0 1 1 7.1e-06 0.00043 14.2 0.0 8 111 5 155 4 167 0.75 # 563 # 1585 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 6_8 - 524 AAA_22 PF13401.1 131 0.0043 11.0 1.4 1 2 0.082 5 1.1 0.4 38 88 30 79 10 99 0.74 # 8459 # 10030 # 1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.566 6_8 - 524 AAA_22 PF13401.1 131 0.0043 11.0 1.4 2 2 0.0008 0.049 7.6 0.0 12 85 266 351 264 422 0.78 # 8459 # 10030 # 1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.566 9_4 - 463 AAA_15 PF13175.1 415 1.9e-09 30.8 0.1 1 1 2.7e-11 2.5e-09 30.4 0.1 332 414 176 259 123 260 0.74 # 1570 # 2958 # -1 # ID=9_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 2_5 - 232 AAA_15 PF13175.1 415 0.00045 13.1 0.0 1 2 8e-05 0.0074 9.1 0.0 25 46 34 60 9 93 0.72 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_15 PF13175.1 415 0.00045 13.1 0.0 2 2 0.011 1 2.0 0.0 372 414 164 205 140 205 0.89 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_5 - 228 N6_N4_Mtase PF01555.13 231 5.6e-37 121.2 0.0 1 2 5.1e-16 9.3e-14 45.2 0.0 1 114 21 124 21 133 0.91 # 5504 # 6187 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 228 N6_N4_Mtase PF01555.13 231 5.6e-37 121.2 0.0 2 2 6.4e-25 1.2e-22 74.3 0.0 169 228 141 200 126 203 0.90 # 5504 # 6187 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_5 - 232 AAA_17 PF13207.1 121 5.1e-05 17.9 0.2 1 1 8.7e-07 8e-05 17.2 0.2 2 19 39 56 38 219 0.85 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_62 - 730 AAA_17 PF13207.1 121 0.00061 14.4 0.0 1 1 1.6e-05 0.0015 13.2 0.0 3 28 189 218 187 336 0.74 # 46783 # 48972 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 2_5 - 232 AAA_21 PF13304.1 303 4.3e-13 43.6 0.0 1 2 3.7e-06 0.00034 14.3 0.1 1 22 38 59 38 71 0.87 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_21 PF13304.1 303 4.3e-13 43.6 0.0 2 2 6.2e-10 5.7e-08 26.8 0.0 234 301 141 205 134 206 0.96 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 9_4 - 463 AAA_21 PF13304.1 303 2e-08 28.3 0.2 1 1 3.5e-10 3.2e-08 27.6 0.2 261 301 221 259 183 261 0.90 # 1570 # 2958 # -1 # ID=9_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_44 - 876 MobB PF03205.9 140 0.00046 13.7 0.2 1 1 8.1e-05 0.0049 10.3 0.0 4 37 483 515 481 523 0.79 # 30771 # 33398 # 1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_5 - 232 MobB PF03205.9 140 0.00049 13.6 0.0 1 1 1.4e-05 0.00088 12.8 0.0 3 20 39 56 37 108 0.84 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_62 - 730 MobB PF03205.9 140 0.0015 12.0 0.0 1 1 5.3e-05 0.0032 10.9 0.0 7 34 192 219 188 225 0.89 # 46783 # 48972 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_35 - 122 CTP_transf_2 PF01467.21 157 0.0014 12.4 0.0 1 1 8.5e-06 0.0016 12.3 0.0 32 67 7 41 2 98 0.65 # 25295 # 25660 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_2 - 389 ArsA_ATPase PF02374.10 305 3.2e-06 20.1 0.4 1 2 1.7e-06 0.0003 13.6 0.1 9 36 115 142 109 151 0.89 # 1342 # 2508 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_2 - 389 ArsA_ATPase PF02374.10 305 3.2e-06 20.1 0.4 2 2 0.0011 0.2 4.3 0.0 123 136 231 244 221 251 0.84 # 1342 # 2508 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 2_5 - 232 SMC_N PF02463.14 220 5.2e-09 29.4 0.0 1 1 4.7e-09 4.3e-07 23.1 0.0 24 212 36 216 24 220 0.76 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 9_5 - 48 SMC_N PF02463.14 220 0.00071 12.6 0.0 1 1 8.4e-06 0.00077 12.5 0.0 2 38 4 38 3 42 0.91 # 2990 # 3133 # -1 # ID=9_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.486 1_2 - 389 VirC1 PF07015.6 231 0.00012 14.9 0.1 1 2 0.00028 0.051 6.3 0.0 4 42 109 147 107 154 0.91 # 1342 # 2508 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_2 - 389 VirC1 PF07015.6 231 0.00012 14.9 0.1 2 2 0.0003 0.055 6.2 0.1 84 139 235 290 222 312 0.77 # 1342 # 2508 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_62 - 730 AAA_16 PF13191.1 185 6.6e-06 20.0 0.0 1 1 4.3e-07 4e-05 17.4 0.0 21 60 182 222 179 263 0.81 # 46783 # 48972 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 2_5 - 232 AAA_16 PF13191.1 185 1.1e-05 19.2 0.4 1 1 2.8e-07 2.5e-05 18.0 0.4 18 56 30 69 23 200 0.73 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_23 PF13476.1 202 0.00091 13.3 0.0 1 1 7.1e-06 0.0013 12.8 0.0 19 39 36 56 18 94 0.84 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_18 PF13238.1 129 7.7e-05 16.8 0.7 1 1 3e-06 0.00055 14.0 0.7 1 19 39 57 39 214 0.88 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_13 PF13166.1 712 0.003 9.7 0.0 1 2 3.4e-05 0.0062 8.7 0.0 20 42 40 62 25 94 0.83 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_13 PF13166.1 712 0.003 9.7 0.0 2 2 0.093 17 -2.7 0.0 525 570 159 202 155 205 0.87 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_2 - 389 CbiA PF01656.18 195 1.8e-36 119.1 0.0 1 1 1.3e-38 2.4e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 1342 # 2508 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 2_5 - 232 KaiC PF06745.8 227 0.00088 12.2 0.1 1 1 9.4e-06 0.0017 11.2 0.1 7 35 25 52 22 66 0.88 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_14 PF13173.1 128 0.00099 12.8 0.0 1 1 1.2e-05 0.0023 11.6 0.0 2 41 36 75 35 131 0.63 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_29 PF13555.1 62 4.9e-06 19.8 0.1 1 1 5.1e-08 9.3e-06 18.9 0.1 16 42 30 55 24 71 0.78 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 5_7 - 426 Pyr_redox_3 PF13738.1 203 4e-18 59.9 0.0 1 2 2e-16 3.6e-14 47.0 0.0 78 200 93 218 64 221 0.87 # 6810 # 8087 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 5_7 - 426 Pyr_redox_3 PF13738.1 203 4e-18 59.9 0.0 2 2 2.2e-05 0.004 10.9 0.0 48 172 234 375 225 381 0.65 # 6810 # 8087 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 2_5 - 232 MMR_HSR1 PF01926.18 116 0.00034 14.3 0.2 1 1 3.2e-06 0.00058 13.6 0.2 2 20 39 57 38 201 0.91 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 DUF258 PF03193.11 161 2.6e-06 20.5 0.0 1 1 2e-08 3.7e-06 19.9 0.0 19 61 19 62 4 91 0.83 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_62 - 730 TraG-D_C PF12696.2 128 1.3e-20 67.3 0.0 1 1 1.4e-22 2.5e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 46783 # 48972 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_2 - 389 AAA_31 PF13614.1 157 1.8e-09 31.5 0.0 1 2 1.4e-08 2.5e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 1342 # 2508 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_2 - 389 AAA_31 PF13614.1 157 1.8e-09 31.5 0.0 2 2 0.00018 0.033 7.9 0.1 110 152 227 268 223 272 0.84 # 1342 # 2508 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 2_5 - 232 NTPase_1 PF03266.10 168 0.00018 15.0 0.1 1 2 3.4e-05 0.0063 10.0 0.0 2 44 39 83 38 91 0.80 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 NTPase_1 PF03266.10 168 0.00018 15.0 0.1 2 2 0.0042 0.77 3.2 0.0 87 151 153 219 115 230 0.73 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_33 PF13671.1 143 0.00069 13.3 1.4 1 1 3.1e-05 0.0056 10.3 1.4 2 19 39 56 38 214 0.73 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_5 - 228 Methyltransf_26 PF13659.1 117 4e-11 36.8 0.1 1 2 1e-06 6.3e-05 16.8 0.0 57 114 7 71 2 74 0.72 # 5504 # 6187 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 228 Methyltransf_26 PF13659.1 117 4e-11 36.8 0.1 2 2 4.3e-07 2.6e-05 18.0 0.0 4 44 167 206 164 222 0.82 # 5504 # 6187 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_17 - 84 Methyltransf_26 PF13659.1 117 1.9e-05 18.5 0.1 1 1 4.7e-07 2.9e-05 17.9 0.1 71 114 9 43 3 46 0.83 # 12203 # 12454 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.595 1_16 - 119 Methyltransf_26 PF13659.1 117 0.00016 15.5 0.1 1 1 4.9e-06 0.0003 14.6 0.0 4 44 54 95 51 114 0.89 # 11889 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.577 6_2 - 1703 AAA_30 PF13604.1 196 2.9e-42 138.2 22.3 1 2 1.4e-05 0.00082 12.7 3.7 7 132 416 535 412 555 0.83 # 123 # 5231 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 6_2 - 1703 AAA_30 PF13604.1 196 2.9e-42 138.2 22.3 2 2 7.4e-44 4.5e-42 137.6 1.6 1 186 964 1152 964 1156 0.94 # 123 # 5231 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 2_5 - 232 AAA_30 PF13604.1 196 0.0002 14.8 0.4 1 1 5.6e-06 0.00034 14.0 0.4 18 58 36 76 29 202 0.87 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_62 - 730 AAA_30 PF13604.1 196 0.0015 11.8 0.0 1 1 5.4e-05 0.0033 10.7 0.0 21 57 188 224 180 230 0.85 # 46783 # 48972 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_44 - 876 FtsK_SpoIIIE PF01580.13 205 7.6e-06 19.3 0.2 1 2 4.1e-06 0.00037 13.7 0.0 39 63 476 504 463 507 0.84 # 30771 # 33398 # 1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_44 - 876 FtsK_SpoIIIE PF01580.13 205 7.6e-06 19.3 0.2 2 2 0.0077 0.7 3.0 0.1 75 167 530 626 529 632 0.85 # 30771 # 33398 # 1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_5 - 232 FtsK_SpoIIIE PF01580.13 205 0.00024 14.4 0.0 1 1 7.6e-06 0.0007 12.9 0.0 37 60 35 58 14 77 0.81 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 8_3 - 304 TIGR02075 TIGR02075 233 0.00079 12.5 0.1 1 2 0.013 2.4 1.1 0.0 5 90 8 98 4 128 0.67 # 2812 # 3723 # 1 # ID=8_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 8_3 - 304 TIGR02075 TIGR02075 233 0.00079 12.5 0.1 2 2 0.0001 0.018 8.0 0.1 135 166 206 236 158 252 0.70 # 2812 # 3723 # 1 # ID=8_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_17 - 84 MTS PF05175.9 170 8.7e-05 15.7 0.0 1 1 5.3e-07 9.7e-05 15.5 0.0 98 142 8 46 2 65 0.81 # 12203 # 12454 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.595 8_7 - 74 FbpA PF05833.6 455 0.00063 12.1 3.6 1 1 3.7e-06 0.00067 12.0 3.6 396 451 9 63 2 67 0.77 # 7180 # 7401 # -1 # ID=8_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.518 1_17 - 84 Methyltrans_SAM PF10672.4 286 0.00032 13.3 0.0 1 1 2e-06 0.00036 13.2 0.0 196 261 9 69 4 77 0.78 # 12203 # 12454 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.595 5_7 - 426 Lycopene_cycl PF05834.7 374 5.1e-05 16.0 0.0 1 1 4.5e-07 8.2e-05 15.3 0.0 1 144 6 157 6 182 0.73 # 6810 # 8087 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 2_5 - 232 ABC_tran PF00005.22 137 4.4e-36 118.0 0.0 1 1 3.4e-38 6.3e-36 117.5 0.0 1 136 26 171 26 172 0.92 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 5_7 - 426 K_oxygenase PF13434.1 341 5.5e-118 387.5 0.0 1 1 3.6e-120 6.7e-118 387.2 0.0 2 340 4 333 3 334 0.96 # 6810 # 8087 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 2_5 - 232 ATP-synt_ab PF00006.20 215 0.00049 13.4 0.1 1 1 8.3e-06 0.0015 11.8 0.1 8 35 29 56 23 74 0.86 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_5 - 228 Cons_hypoth95 PF03602.10 183 3.7e-05 16.9 0.0 1 2 0.00035 0.065 6.4 0.0 112 147 18 55 9 82 0.66 # 5504 # 6187 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 228 Cons_hypoth95 PF03602.10 183 3.7e-05 16.9 0.0 2 2 7e-05 0.013 8.6 0.0 41 62 162 183 145 219 0.78 # 5504 # 6187 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 6_2 - 1703 AAA_19 PF13245.1 76 2.2e-07 24.4 1.6 1 1 8.6e-09 7.9e-07 22.6 0.3 7 76 977 1043 970 1043 0.74 # 123 # 5231 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 2_5 - 232 AAA_19 PF13245.1 76 0.00034 14.1 0.1 1 1 3.6e-05 0.0033 11.0 0.0 10 54 36 75 29 87 0.75 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_44 - 876 AAA_10 PF12846.2 304 7.1e-49 160.6 0.0 1 1 2e-50 1.2e-48 159.8 0.0 1 294 479 768 479 774 0.88 # 30771 # 33398 # 1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_62 - 730 AAA_10 PF12846.2 304 1.8e-10 34.5 0.0 1 1 5.4e-11 3.3e-09 30.3 0.0 3 296 187 494 186 500 0.69 # 46783 # 48972 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 2_5 - 232 AAA_10 PF12846.2 304 2.4e-05 17.6 0.0 1 1 1e-06 6.1e-05 16.3 0.0 4 29 39 65 37 85 0.76 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 SbcCD_C PF13558.1 90 1.6e-05 18.6 0.2 1 1 1.3e-06 0.00024 14.8 0.2 32 89 143 187 126 188 0.76 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 9_3 - 341 Viral_helicase1 PF01443.13 234 1.2e-11 38.3 0.1 1 2 3.9e-07 3.6e-05 17.1 0.0 2 30 5 38 4 59 0.76 # 563 # 1585 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 9_3 - 341 Viral_helicase1 PF01443.13 234 1.2e-11 38.3 0.1 2 2 1.4e-07 1.3e-05 18.5 0.1 63 233 133 330 122 331 0.67 # 563 # 1585 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 6_2 - 1703 Viral_helicase1 PF01443.13 234 0.0016 11.7 0.0 1 2 0.00064 0.058 6.6 0.0 1 23 984 1007 984 1147 0.76 # 123 # 5231 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 6_2 - 1703 Viral_helicase1 PF01443.13 234 0.0016 11.7 0.0 2 2 0.013 1.2 2.3 0.0 171 234 1383 1443 1338 1443 0.63 # 123 # 5231 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 5_7 - 426 FMO-like PF00743.14 532 5e-06 18.6 0.0 1 2 3.9e-06 0.00071 11.5 0.0 142 200 143 198 95 219 0.87 # 6810 # 8087 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 5_7 - 426 FMO-like PF00743.14 532 5e-06 18.6 0.0 2 2 0.00035 0.064 5.1 0.0 317 342 319 344 311 377 0.81 # 6810 # 8087 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 5_7 - 426 NAD_binding_9 PF13454.1 156 6.4e-09 29.5 0.0 1 3 5.8e-08 1.1e-05 19.1 0.0 3 155 10 151 7 152 0.68 # 6810 # 8087 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 5_7 - 426 NAD_binding_9 PF13454.1 156 6.4e-09 29.5 0.0 2 3 0.02 3.7 1.1 0.0 2 31 186 214 185 229 0.79 # 6810 # 8087 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 5_7 - 426 NAD_binding_9 PF13454.1 156 6.4e-09 29.5 0.0 3 3 0.00086 0.16 5.5 0.0 116 155 287 332 254 333 0.73 # 6810 # 8087 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_62 - 730 TrwB_AAD_bind PF10412.4 386 3.7e-150 493.5 0.0 1 1 4.9e-152 4.5e-150 493.2 0.0 2 386 172 561 171 561 0.99 # 46783 # 48972 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_44 - 876 TrwB_AAD_bind PF10412.4 386 7.4e-07 21.8 0.1 1 2 4.8e-08 4.4e-06 19.2 0.0 15 53 479 517 470 547 0.80 # 30771 # 33398 # 1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_44 - 876 TrwB_AAD_bind PF10412.4 386 7.4e-07 21.8 0.1 2 2 0.041 3.7 -0.3 0.0 261 317 713 769 684 772 0.92 # 30771 # 33398 # 1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 6_2 - 1703 AAA_11 PF13086.1 236 0.00029 14.2 2.3 1 1 3e-06 0.00054 13.3 0.0 2 75 965 1035 964 1056 0.80 # 123 # 5231 # 1 # ID=6_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 1_62 - 730 T4SS-DNA_transf PF02534.9 469 1e-09 31.2 0.0 1 1 3.2e-11 2.9e-09 29.7 0.0 264 361 382 476 198 500 0.83 # 46783 # 48972 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_44 - 876 T4SS-DNA_transf PF02534.9 469 0.00038 12.8 0.0 1 2 0.0031 0.29 3.3 0.0 105 184 533 606 470 625 0.82 # 30771 # 33398 # 1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_44 - 876 T4SS-DNA_transf PF02534.9 469 0.00038 12.8 0.0 2 2 0.00021 0.02 7.2 0.0 319 378 711 769 662 771 0.90 # 30771 # 33398 # 1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_16 - 119 TIGR00755 TIGR00755 256 1e-06 21.7 0.0 1 1 7e-09 1.3e-06 21.3 0.0 8 74 29 97 24 105 0.89 # 11889 # 12245 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_44 - 876 Pox_A32 PF04665.7 241 0.0015 11.5 0.0 1 1 2.3e-05 0.0042 10.1 0.0 7 38 473 504 469 519 0.85 # 30771 # 33398 # 1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 7_11 - 565 Plug PF07715.10 108 6.1e-24 78.2 1.9 1 1 1.8e-25 1.6e-23 76.9 1.9 3 108 46 149 44 149 0.94 # 8373 # 10067 # 1 # ID=7_11;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 5_8 - 733 Plug PF07715.10 108 7.4e-20 65.1 2.2 1 1 9.6e-22 8.8e-20 64.9 0.6 3 107 44 145 42 146 0.94 # 8172 # 10370 # 1 # ID=5_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.547 9_3 - 341 UvrD-helicase PF00580.16 315 1.8e-08 27.7 0.1 1 2 5.9e-06 0.0011 12.0 0.1 16 69 4 49 2 78 0.83 # 563 # 1585 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 9_3 - 341 UvrD-helicase PF00580.16 315 1.8e-08 27.7 0.1 2 2 2.6e-06 0.00047 13.2 0.0 242 294 115 170 96 174 0.86 # 563 # 1585 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 2_5 - 232 NACHT PF05729.7 166 0.00035 14.0 0.1 1 2 8.6e-06 0.0016 11.9 0.0 3 20 39 56 37 76 0.86 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 NACHT PF05729.7 166 0.00035 14.0 0.1 2 2 0.057 10 -0.5 0.0 91 115 168 192 154 215 0.75 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_25 PF13481.1 194 1.1e-05 18.6 0.0 1 2 5.1e-07 9.4e-05 15.6 0.0 29 58 32 62 14 131 0.78 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_25 PF13481.1 194 1.1e-05 18.6 0.0 2 2 0.017 3.1 0.9 0.0 161 188 175 201 165 206 0.69 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_28 PF13521.1 163 1.4e-06 22.1 0.1 1 2 5.8e-07 0.00011 16.0 0.0 2 21 39 58 38 94 0.79 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 232 AAA_28 PF13521.1 163 1.4e-06 22.1 0.1 2 2 0.0029 0.52 4.0 0.0 19 79 111 168 104 174 0.63 # 4560 # 5255 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c3f6f3dd-2bb1-43d4-b19b-2dc688012b8d # Target file: checkm_output/bins/pm1593/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1593/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c3f6f3dd-2bb1-43d4-b19b-2dc688012b8d checkm_output/bins/pm1593/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:30 2020 # [ok]