# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_18 - 262 Mg_chelatase PF01078.16 207 0.00057 12.1 0.0 1 1 1.1e-05 0.0012 11.1 0.0 23 43 100 120 96 153 0.86 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 IstB_IS21 PF01695.12 178 3.5e-69 224.8 0.1 1 1 4.1e-71 4.6e-69 224.4 0.1 2 177 55 230 54 231 0.98 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_10 - 565 3HCDH_N PF02737.13 180 0.0036 10.0 6.4 1 2 0.0047 0.53 2.9 2.4 1 30 99 128 99 134 0.93 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 3HCDH_N PF02737.13 180 0.0036 10.0 6.4 2 2 9e-05 0.01 8.6 0.1 2 39 272 309 271 348 0.73 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 GIDA PF01134.17 392 2.9e-08 26.0 6.6 1 3 3.5e-10 3.9e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 GIDA PF01134.17 392 2.9e-08 26.0 6.6 2 3 0.038 4.2 -0.9 0.0 3 31 273 301 271 315 0.84 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 GIDA PF01134.17 392 2.9e-08 26.0 6.6 3 3 0.018 2.1 0.1 0.1 349 385 393 429 387 433 0.77 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_31 - 145 SSB PF00436.20 104 8.3e-31 99.1 0.3 1 1 8.5e-33 9.6e-31 98.9 0.3 2 103 7 111 6 112 0.96 # 30994 # 31428 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 2_10 - 565 Pyr_redox_2 PF07992.9 201 8.9e-44 142.8 0.0 1 1 3.2e-45 3.6e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_22 - 388 DUF87 PF01935.12 229 0.0001 15.2 0.0 1 1 1.8e-06 0.0002 14.2 0.0 28 45 157 174 155 188 0.89 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_15 - 287 AAA_22 PF13401.1 131 4.2e-17 55.6 0.0 1 1 2.7e-18 7.5e-17 54.8 0.0 7 126 64 190 59 194 0.94 # 8713 # 9573 # 1 # ID=2_15;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 2_18 - 262 AAA_22 PF13401.1 131 3.1e-06 20.5 0.1 1 2 1.1e-05 0.00031 14.0 0.2 2 28 97 123 96 159 0.74 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 AAA_22 PF13401.1 131 3.1e-06 20.5 0.1 2 2 0.0083 0.23 4.7 0.0 87 117 151 196 132 204 0.62 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 388 AAA_22 PF13401.1 131 3.2e-06 20.4 0.0 1 1 2.9e-07 8e-06 19.1 0.0 4 30 152 178 149 243 0.84 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_9 - 1017 AAA_22 PF13401.1 131 0.00023 14.4 0.0 1 1 2.7e-05 0.00075 12.7 0.0 8 73 492 561 486 594 0.70 # 10719 # 13769 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_22 - 388 ATP_bind_1 PF03029.12 238 0.00091 11.8 0.0 1 1 1.3e-05 0.0015 11.2 0.0 1 25 157 181 157 191 0.84 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_10 - 565 DFP PF04127.10 185 0.00087 12.0 2.4 1 2 0.00039 0.044 6.4 0.4 28 51 105 128 99 156 0.83 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 DFP PF04127.10 185 0.00087 12.0 2.4 2 2 0.0014 0.15 4.7 0.1 32 53 281 302 276 336 0.77 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_18 - 262 AAA_3 PF07726.6 131 0.00057 12.6 0.0 1 1 1.2e-05 0.0014 11.4 0.0 2 72 102 171 101 201 0.70 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_10 - 565 NAD_binding_7 PF13241.1 103 3.8e-07 23.4 1.2 1 2 5.4e-05 0.0061 9.9 0.2 9 38 99 128 96 184 0.89 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 NAD_binding_7 PF13241.1 103 3.8e-07 23.4 1.2 2 2 1.4e-05 0.0016 11.8 0.1 8 41 270 306 264 380 0.74 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_9 - 1017 AAA_17 PF13207.1 121 6.9e-05 16.8 0.0 1 1 8.5e-06 0.00048 14.0 0.0 3 27 492 522 492 581 0.72 # 10719 # 13769 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_18 - 262 AAA_17 PF13207.1 121 0.00012 15.9 0.0 1 1 3.1e-06 0.00018 15.4 0.0 2 38 102 133 101 232 0.74 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 388 Miro PF08477.8 119 0.0011 12.6 0.0 1 1 2.1e-05 0.0024 11.5 0.0 4 28 157 186 156 220 0.72 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_22 - 388 MobB PF03205.9 140 0.00056 12.7 0.0 1 1 1e-05 0.0012 11.7 0.0 4 25 156 177 154 190 0.85 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_18 - 262 PhoH PF02562.11 205 1.4e-08 27.2 0.1 1 1 2.9e-10 3.3e-08 26.0 0.1 3 61 83 142 81 179 0.77 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 MCM PF00493.18 331 0.00023 13.1 0.0 1 2 7.5e-06 0.00084 11.2 0.0 56 120 98 162 82 172 0.81 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 MCM PF00493.18 331 0.00023 13.1 0.0 2 2 0.034 3.8 -0.8 0.0 161 211 190 237 186 259 0.71 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 388 T2SE PF00437.15 272 3.2e-23 75.0 0.0 1 1 4.6e-25 5.2e-23 74.3 0.0 11 269 24 303 15 306 0.78 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_10 - 565 NAD_binding_8 PF13450.1 68 3.9e-05 16.7 1.2 1 2 3.5e-07 3.9e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 NAD_binding_8 PF13450.1 68 3.9e-05 16.7 1.2 2 2 0.041 4.6 0.5 0.2 1 25 274 298 274 303 0.81 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 F420_oxidored PF03807.12 96 0.0079 9.7 4.1 1 2 0.0023 0.26 4.9 1.2 2 31 100 126 99 131 0.87 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 F420_oxidored PF03807.12 96 0.0079 9.7 4.1 2 2 0.0075 0.84 3.3 0.1 1 34 271 300 271 323 0.87 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_22 - 388 SMC_N PF02463.14 220 0.0013 11.0 0.0 1 1 2.1e-05 0.0024 10.2 0.0 26 50 154 178 147 195 0.81 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_15 - 287 AAA_16 PF13191.1 185 1.5e-05 18.1 0.0 1 2 2.3e-05 0.00087 12.3 0.0 8 52 45 94 43 146 0.70 # 8713 # 9573 # 1 # ID=2_15;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 2_15 - 287 AAA_16 PF13191.1 185 1.5e-05 18.1 0.0 2 2 0.012 0.43 3.6 0.0 139 183 134 184 114 186 0.72 # 8713 # 9573 # 1 # ID=2_15;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 2_18 - 262 AAA_16 PF13191.1 185 0.00016 14.7 0.1 1 1 1e-05 0.00038 13.5 0.1 23 51 98 126 84 166 0.79 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 388 AAA_16 PF13191.1 185 0.00099 12.2 0.0 1 1 5.3e-05 0.002 11.2 0.0 26 50 154 178 140 211 0.85 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_22 - 388 AAA_23 PF13476.1 202 2.2e-06 21.2 0.1 1 1 4.2e-08 4.7e-06 20.1 0.0 19 44 152 177 140 226 0.87 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_9 - 1017 AAA_18 PF13238.1 129 9.5e-05 15.8 1.3 1 1 3.5e-06 0.0004 13.8 0.0 2 19 492 509 492 571 0.76 # 10719 # 13769 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_22 - 388 KaiC PF06745.8 227 0.00094 11.4 0.0 1 1 1.5e-05 0.0016 10.6 0.0 14 59 147 191 137 201 0.76 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_10 - 565 HI0933_like PF03486.9 409 2.5e-08 25.8 3.7 1 2 1.2e-06 0.00013 13.5 2.5 2 33 99 130 98 138 0.91 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 HI0933_like PF03486.9 409 2.5e-08 25.8 3.7 2 2 7.2e-06 0.00081 10.9 0.0 82 164 284 366 276 385 0.83 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_22 - 388 AAA_29 PF13555.1 62 9.9e-06 18.1 0.1 1 1 4.4e-07 2.5e-05 16.9 0.1 26 43 155 172 147 175 0.84 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_18 - 262 AAA_29 PF13555.1 62 1.5e-05 17.5 0.0 1 1 5.6e-07 3.1e-05 16.5 0.0 5 47 80 125 78 136 0.83 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_10 - 565 FAD_binding_2 PF00890.19 417 4.8e-06 18.6 4.7 1 3 4.3e-08 4.8e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 FAD_binding_2 PF00890.19 417 4.8e-06 18.6 4.7 2 3 0.034 3.8 -0.8 0.1 143 204 311 369 297 388 0.72 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 FAD_binding_2 PF00890.19 417 4.8e-06 18.6 4.7 3 3 0.074 8.3 -1.9 0.0 376 402 388 408 377 424 0.82 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_18 - 262 AAA PF00004.24 132 1.2e-07 25.1 0.0 1 1 1.8e-09 2e-07 24.4 0.0 1 111 102 202 102 230 0.70 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 Bac_DnaA PF00308.13 219 1.4e-10 34.2 0.0 1 1 2.1e-12 2.3e-10 33.5 0.0 36 136 101 199 80 221 0.87 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_10 - 565 Pyr_redox_3 PF13738.1 203 1.4e-17 57.4 0.1 1 2 4.4e-14 5e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 Pyr_redox_3 PF13738.1 203 1.4e-17 57.4 0.1 2 2 9e-07 0.0001 15.5 0.0 93 147 320 375 309 430 0.76 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_15 - 287 TniB PF05621.6 302 3.9e-201 659.2 5.6 1 1 3.8e-203 4.3e-201 659.0 5.6 1 285 1 285 1 286 1.00 # 8713 # 9573 # 1 # ID=2_15;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_22 - 388 Ribosomal_S5 PF00333.15 67 3.4e-05 16.7 0.1 1 2 0.00091 0.1 5.5 0.0 26 45 84 103 76 114 0.83 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_22 - 388 Ribosomal_S5 PF00333.15 67 3.4e-05 16.7 0.1 2 2 0.00012 0.013 8.4 0.0 21 54 242 274 230 278 0.91 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_2 - 696 TraG-D_C PF12696.2 128 0.00015 14.7 0.1 1 1 2.4e-06 0.00027 13.9 0.1 3 94 437 524 435 556 0.78 # 960 # 3047 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 2_18 - 262 AAA_33 PF13671.1 143 0.00041 13.3 0.2 1 1 8.9e-06 0.001 12.1 0.2 2 36 102 142 102 255 0.67 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 KTI12 PF08433.5 270 0.0002 13.7 0.4 1 2 6.4e-05 0.0072 8.6 0.0 4 81 102 172 101 174 0.68 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 KTI12 PF08433.5 270 0.0002 13.7 0.4 2 2 0.0037 0.41 2.8 0.1 34 59 232 257 212 261 0.77 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 DnaB_C PF03796.10 259 0.00017 13.6 0.0 1 1 2.4e-06 0.00027 12.9 0.0 16 55 96 135 85 158 0.90 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 AAA_30 PF13604.1 196 0.00052 12.7 0.2 1 2 1.4e-05 0.0016 11.1 0.1 16 49 97 131 87 162 0.73 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 AAA_30 PF13604.1 196 0.00052 12.7 0.2 2 2 0.069 7.8 -0.9 0.0 86 104 149 172 117 179 0.62 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 388 FtsK_SpoIIIE PF01580.13 205 0.00011 14.8 0.0 1 1 1.9e-06 0.00021 13.8 0.0 41 59 155 173 129 184 0.85 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_22 - 388 ABC_tran PF00005.22 137 0.00016 15.1 0.0 1 1 2.7e-06 0.0003 14.2 0.0 16 33 157 174 149 217 0.83 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_10 - 565 K_oxygenase PF13434.1 341 6.4e-06 18.3 0.0 1 3 0.0039 0.44 2.4 0.0 187 220 94 125 59 130 0.79 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 K_oxygenase PF13434.1 341 6.4e-06 18.3 0.0 2 3 3.3e-06 0.00038 12.5 0.0 132 231 218 308 202 332 0.82 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 K_oxygenase PF13434.1 341 6.4e-06 18.3 0.0 3 3 0.057 6.4 -1.4 0.0 132 160 346 369 314 377 0.67 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_18 - 262 RuvB_N PF05496.7 234 0.00059 12.0 0.0 1 1 7.1e-06 0.0008 11.5 0.0 48 75 97 124 45 170 0.84 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 AAA_19 PF13245.1 76 4.2e-07 22.8 0.0 1 1 1.9e-08 1.1e-06 21.4 0.0 11 37 101 126 95 147 0.81 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_9 - 1017 AAA_19 PF13245.1 76 0.00057 12.7 0.0 1 1 3.2e-05 0.0018 11.1 0.0 14 31 492 508 481 518 0.90 # 10719 # 13769 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_9 - 1017 AAA_10 PF12846.2 304 9.3e-41 133.2 0.1 1 1 5.5e-42 2e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 10719 # 13769 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_2 - 696 AAA_10 PF12846.2 304 7e-10 31.8 0.0 1 1 2.8e-11 1e-09 31.2 0.0 2 292 134 503 133 514 0.76 # 960 # 3047 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 388 AAA_10 PF12846.2 304 1.6e-06 20.8 0.0 1 1 2.5e-07 9.3e-06 18.3 0.0 3 27 154 178 152 196 0.74 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_10 - 565 FAD_oxidored PF12831.2 428 3.3e-06 19.4 3.6 1 1 2.9e-08 3.3e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 DAO PF01266.19 358 4.7e-09 28.6 11.7 1 3 1.4e-08 1.5e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 DAO PF01266.19 358 4.7e-09 28.6 11.7 2 3 0.032 3.5 -0.6 0.1 3 31 273 301 271 307 0.75 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 DAO PF01266.19 358 4.7e-09 28.6 11.7 3 3 9.4e-07 0.00011 14.3 0.5 152 208 314 372 307 433 0.74 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_9 - 1017 DUF2075 PF09848.4 352 0.0004 12.5 0.0 1 1 1.1e-05 0.0012 10.8 0.0 5 22 492 509 489 537 0.87 # 10719 # 13769 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_10 - 565 NAD_binding_9 PF13454.1 156 3.2e-05 16.8 2.8 1 3 0.0081 0.91 2.3 0.1 1 41 101 135 101 162 0.81 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 NAD_binding_9 PF13454.1 156 3.2e-05 16.8 2.8 2 3 0.034 3.8 0.3 0.0 134 155 218 241 202 242 0.72 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 NAD_binding_9 PF13454.1 156 3.2e-05 16.8 2.8 3 3 6.6e-06 0.00074 12.4 0.1 112 155 321 366 311 367 0.85 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_18 - 262 DUF815 PF05673.8 250 0.00025 13.1 0.0 1 1 3.6e-06 0.00041 12.4 0.0 23 76 65 122 46 139 0.79 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_10 - 565 Pyr_redox PF00070.22 80 4e-20 65.1 6.0 1 2 1.4e-06 0.00016 15.2 1.5 1 31 99 129 99 131 0.96 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 Pyr_redox PF00070.22 80 4e-20 65.1 6.0 2 2 6.2e-18 7e-16 51.6 0.2 1 74 271 345 271 354 0.90 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_41 - 287 Methyltransf_27 PF13708.1 194 1.5e-68 223.2 0.0 1 1 2.3e-70 2.5e-68 222.5 0.0 2 194 89 282 88 282 0.97 # 35097 # 35957 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_2 - 696 TrwB_AAD_bind PF10412.4 386 2.1e-06 19.6 0.9 1 3 1.7e-05 0.0019 9.8 0.0 16 36 134 154 125 158 0.88 # 960 # 3047 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_2 - 696 TrwB_AAD_bind PF10412.4 386 2.1e-06 19.6 0.9 2 3 9.3e-05 0.01 7.4 0.1 93 140 235 281 229 303 0.80 # 960 # 3047 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_2 - 696 TrwB_AAD_bind PF10412.4 386 2.1e-06 19.6 0.9 3 3 0.083 9.3 -2.3 0.0 293 323 482 512 405 546 0.58 # 960 # 3047 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 2_18 - 262 AAA_11 PF13086.1 236 0.00051 12.7 0.3 1 1 8.7e-06 0.00097 11.8 0.3 6 44 89 142 82 260 0.72 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 Sigma54_activ_2 PF14532.1 138 0.00033 13.8 0.1 1 1 7.7e-06 0.00086 12.4 0.0 3 44 79 122 77 151 0.81 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_15 - 287 AAA_32 PF13654.1 509 0.00016 13.5 0.1 1 2 6.6e-06 0.00074 11.3 0.0 8 81 34 112 26 124 0.86 # 8713 # 9573 # 1 # ID=2_15;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 2_15 - 287 AAA_32 PF13654.1 509 0.00016 13.5 0.1 2 2 0.02 2.3 -0.3 0.1 472 502 255 285 242 286 0.89 # 8713 # 9573 # 1 # ID=2_15;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_22 - 388 GTP_EFTU PF00009.22 188 0.0012 11.4 0.0 1 1 2e-05 0.0022 10.5 0.0 8 34 157 183 155 195 0.87 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_22 - 388 RNA_helicase PF00910.17 107 0.0013 12.1 0.0 1 1 2.5e-05 0.0028 10.9 0.0 3 26 157 180 156 197 0.81 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_10 - 565 AlaDh_PNT_C PF01262.16 168 2.7e-05 16.9 3.1 1 2 0.00051 0.058 6.0 0.8 15 50 92 127 89 130 0.90 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 565 AlaDh_PNT_C PF01262.16 168 2.7e-05 16.9 3.1 2 2 2.1e-05 0.0024 10.5 0.1 16 58 265 307 257 339 0.84 # 3945 # 5639 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_22 - 388 NACHT PF05729.7 166 0.00038 13.2 0.0 1 1 1.3e-05 0.00074 12.3 0.0 4 29 156 181 154 188 0.83 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_18 - 262 NACHT PF05729.7 166 0.0014 11.4 2.1 1 2 0.00012 0.0066 9.2 0.3 3 23 102 122 100 148 0.84 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 NACHT PF05729.7 166 0.0014 11.4 2.1 2 2 0.023 1.3 1.7 0.1 80 127 156 200 139 221 0.76 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 388 AAA_25 PF13481.1 194 6.5e-06 18.7 0.0 1 1 2.6e-07 1.5e-05 17.6 0.0 24 53 143 172 120 178 0.86 # 24069 # 25232 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_18 - 262 AAA_25 PF13481.1 194 0.00012 14.6 0.0 1 1 3.6e-06 0.0002 13.8 0.0 29 57 95 123 76 170 0.86 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 AAA_28 PF13521.1 163 1e-05 18.6 1.1 1 1 4.6e-07 5.1e-05 16.3 0.8 1 24 101 124 101 239 0.90 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_18 - 262 AAA_5 PF07728.9 139 0.00021 14.1 0.2 1 1 4.3e-06 0.00048 12.9 0.2 1 19 101 119 101 243 0.78 # 12801 # 13586 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ee5d4cdb-ac2f-4635-8697-84785a2661db # Target file: checkm_output/bins/pm1589/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1589/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ee5d4cdb-ac2f-4635-8697-84785a2661db checkm_output/bins/pm1589/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:27 2020 # [ok]