# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 1017 AAA_22 PF13401.1 131 0.00014 14.4 0.0 1 1 6.7e-06 0.00044 12.7 0.0 8 73 492 561 486 594 0.70 # 9744 # 12794 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_13 - 1017 AAA_17 PF13207.1 121 4.1e-05 16.8 0.0 1 1 4.3e-06 0.00028 14.0 0.0 3 27 492 522 492 581 0.72 # 9744 # 12794 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_13 - 1017 AAA_18 PF13238.1 129 5.6e-05 15.8 1.3 1 1 3.5e-06 0.00023 13.8 0.0 2 19 492 509 492 571 0.76 # 9744 # 12794 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_20 - 696 TraG-D_C PF12696.2 128 9e-05 14.7 0.1 1 1 2.4e-06 0.00016 13.9 0.1 3 94 437 524 435 556 0.78 # 20466 # 22553 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_13 - 1017 AAA_19 PF13245.1 76 0.00034 12.7 0.0 1 1 1.6e-05 0.0011 11.1 0.0 14 31 492 508 481 518 0.90 # 9744 # 12794 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_13 - 1017 AAA_10 PF12846.2 304 5.5e-41 133.2 0.1 1 1 3.6e-42 1.2e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 9744 # 12794 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_20 - 696 AAA_10 PF12846.2 304 4.1e-10 31.8 0.0 1 1 1.9e-11 6.2e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 20466 # 22553 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_13 - 1017 DUF2075 PF09848.4 352 0.00023 12.5 0.0 1 1 1.1e-05 0.00073 10.8 0.0 5 22 492 509 489 537 0.87 # 9744 # 12794 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_20 - 696 TrwB_AAD_bind PF10412.4 386 1.2e-06 19.6 0.9 1 3 1.7e-05 0.0011 9.8 0.0 16 36 134 154 125 158 0.88 # 20466 # 22553 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_20 - 696 TrwB_AAD_bind PF10412.4 386 1.2e-06 19.6 0.9 2 3 9.3e-05 0.0061 7.4 0.1 93 140 235 281 229 303 0.80 # 20466 # 22553 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_20 - 696 TrwB_AAD_bind PF10412.4 386 1.2e-06 19.6 0.9 3 3 0.083 5.5 -2.3 0.0 293 323 482 512 405 546 0.58 # 20466 # 22553 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9901c5af-6107-4467-b116-0b521ff14b68 # Target file: checkm_output/bins/pm1588/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1588/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9901c5af-6107-4467-b116-0b521ff14b68 checkm_output/bins/pm1588/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:25 2020 # [ok]