# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_23 - 224 MipZ PF09140.6 261 2e-14 44.4 0.0 1 2 3.5e-11 1.1e-09 29.0 0.0 2 58 6 61 5 69 0.90 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 MipZ PF09140.6 261 2e-14 44.4 0.0 2 2 1.8e-06 5.5e-05 13.5 0.0 88 150 72 134 64 140 0.88 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 3HCDH_N PF02737.13 180 5.6e-05 14.0 0.0 1 2 7.3e-06 0.00022 12.1 0.0 6 39 17 50 16 90 0.76 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 3HCDH_N PF02737.13 180 5.6e-05 14.0 0.0 2 2 0.098 2.9 -1.3 0.0 72 88 118 134 96 166 0.78 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 AAA_17 PF13207.1 121 8.2e-06 17.9 0.1 1 1 5.8e-07 1.8e-05 16.8 0.1 2 77 7 90 6 210 0.72 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 ArsA_ATPase PF02374.10 305 2.4e-05 14.6 0.7 1 2 6e-06 0.00018 11.8 0.1 2 38 5 42 4 49 0.90 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 ArsA_ATPase PF02374.10 305 2.4e-05 14.6 0.7 2 2 0.012 0.35 1.0 0.1 245 277 180 214 115 218 0.76 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 VirC1 PF07015.6 231 4.9e-06 16.9 0.0 1 1 2.9e-07 8.6e-06 16.1 0.0 3 152 6 150 4 197 0.74 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 CbiA PF01656.18 195 1.6e-12 38.4 0.0 1 1 1.3e-13 4e-12 37.1 0.0 1 146 7 134 7 147 0.80 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 AAA_31 PF13614.1 157 3.4e-09 28.0 0.0 1 2 6.3e-07 1.9e-05 15.9 0.0 1 42 5 46 5 61 0.94 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 AAA_31 PF13614.1 157 3.4e-09 28.0 0.0 2 2 3.4e-05 0.001 10.2 0.0 110 151 75 115 62 121 0.73 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 AAA_10 PF12846.2 304 4.2e-05 14.2 0.0 1 1 1.7e-06 5.1e-05 14.0 0.0 11 138 15 132 5 213 0.65 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 RNA_helicase PF00910.17 107 0.00016 13.1 0.0 1 1 1.2e-05 0.00037 11.9 0.0 2 88 8 91 6 107 0.73 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 AAA_28 PF13521.1 163 4.8e-06 17.8 0.0 1 1 2.1e-07 6.2e-06 17.4 0.0 1 87 5 97 5 131 0.86 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 APS_kinase PF01583.15 157 2e-05 15.5 0.1 1 2 2.9e-06 8.8e-05 13.4 0.0 4 39 6 42 3 48 0.83 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 1_23 - 224 APS_kinase PF01583.15 157 2e-05 15.5 0.1 2 2 0.07 2.1 -0.8 0.0 73 101 100 128 94 136 0.74 # 22020 # 22691 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.432 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/aae3bf40-6515-4d92-9c87-eb5498b18c88 # Target file: checkm_output/bins/pm1582/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1582/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/aae3bf40-6515-4d92-9c87-eb5498b18c88 checkm_output/bins/pm1582/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:22 2020 # [ok]