# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_50 - 225 Eno-Rase_NADH_b PF12242.3 78 9.6e-07 21.7 1.3 1 2 5.2e-08 5.9e-06 19.1 0.4 40 76 4 39 2 41 0.86 # 75108 # 75782 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_50 - 225 Eno-Rase_NADH_b PF12242.3 78 9.6e-07 21.7 1.3 2 2 0.03 3.5 0.7 0.0 3 21 43 61 41 79 0.79 # 75108 # 75782 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_19 - 399 MipZ PF09140.6 261 2.4e-06 19.8 0.2 1 2 4.5e-05 0.0052 8.9 0.0 2 53 110 166 109 190 0.73 # 28829 # 30025 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.551 1_19 - 399 MipZ PF09140.6 261 2.4e-06 19.8 0.2 2 2 5e-05 0.0057 8.8 0.0 90 135 236 281 222 287 0.88 # 28829 # 30025 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.551 1_50 - 225 3HCDH_N PF02737.13 180 0.00017 14.4 0.1 1 2 6.5e-06 0.00074 12.3 0.1 2 70 6 72 5 78 0.74 # 75108 # 75782 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_50 - 225 3HCDH_N PF02737.13 180 0.00017 14.4 0.1 2 2 0.061 6.9 -0.7 0.0 64 89 143 168 106 171 0.68 # 75108 # 75782 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_50 - 225 NmrA PF05368.8 233 0.00047 12.5 0.4 1 1 8.1e-06 0.00093 11.6 0.3 1 35 6 40 6 54 0.91 # 75108 # 75782 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_38 - 162 AAA_22 PF13401.1 131 0.0001 15.5 0.0 1 1 1.4e-06 0.00016 14.9 0.0 5 29 65 89 61 120 0.77 # 60201 # 60686 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_42 - 140 tRNA_anti-like PF12869.2 144 1.2e-07 24.4 0.1 1 1 7.6e-09 8.7e-07 21.6 0.1 44 134 46 129 5 137 0.81 # 63983 # 64402 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_61 - 253 AAA_15 PF13175.1 415 0.0006 12.0 0.3 1 2 0.00064 0.073 5.1 0.0 27 42 33 48 13 91 0.82 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_61 - 253 AAA_15 PF13175.1 415 0.0006 12.0 0.3 2 2 0.00066 0.076 5.0 0.2 373 397 160 184 151 191 0.92 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_38 - 162 AAA_17 PF13207.1 121 0.00096 13.1 0.0 1 1 2.6e-05 0.0015 12.5 0.0 3 33 68 103 67 135 0.71 # 60201 # 60686 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_61 - 253 AAA_17 PF13207.1 121 0.0011 12.9 0.2 1 1 9.6e-05 0.0055 10.7 0.2 6 32 35 65 31 194 0.73 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_61 - 253 AAA_21 PF13304.1 303 9.5e-16 51.6 0.3 1 2 6.6e-10 7.6e-08 25.7 0.1 4 26 33 57 31 82 0.76 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_61 - 253 AAA_21 PF13304.1 303 9.5e-16 51.6 0.3 2 2 1.8e-09 2e-07 24.3 0.0 220 285 122 184 86 214 0.85 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_102 - 140 NAD_synthase PF02540.12 242 0.00014 13.9 0.0 1 1 1.9e-06 0.00022 13.3 0.0 40 103 7 72 3 76 0.84 # 128679 # 129098 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_51 - 1051 Helicase_C PF00271.26 78 2.2e-08 27.0 0.0 1 1 4.9e-10 5.6e-08 25.7 0.0 36 77 884 926 863 927 0.87 # 75789 # 78941 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_47 - 187 Shikimate_DH PF01488.15 135 0.00031 13.9 0.0 1 1 4.5e-06 0.00051 13.3 0.0 11 39 141 169 133 170 0.88 # 71720 # 72280 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_61 - 253 SMC_N PF02463.14 220 4.8e-06 19.0 0.2 1 1 6.2e-07 7.1e-05 15.2 0.2 28 186 32 184 15 210 0.66 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_19 - 399 Fer4_NifH PF00142.13 273 0.0011 11.3 0.0 1 1 1.7e-05 0.0019 10.4 0.0 8 74 117 188 110 197 0.77 # 28829 # 30025 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.551 1_38 - 162 Arch_ATPase PF01637.13 234 0.0015 11.3 0.0 1 1 2.6e-05 0.003 10.3 0.0 4 44 48 88 46 117 0.88 # 60201 # 60686 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_38 - 162 AAA_16 PF13191.1 185 4.2e-06 19.9 0.0 1 1 1.5e-07 5.8e-06 19.5 0.0 7 51 50 91 45 116 0.76 # 60201 # 60686 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_61 - 253 AAA_16 PF13191.1 185 1.9e-05 17.8 1.4 1 1 2e-06 7.5e-05 15.8 1.4 24 81 28 77 15 200 0.70 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_51 - 1051 AAA_16 PF13191.1 185 0.0014 11.7 7.2 1 1 3.1e-05 0.0012 11.9 3.2 111 184 207 298 151 299 0.68 # 75789 # 78941 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_61 - 253 AAA_23 PF13476.1 202 0.0013 12.1 0.1 1 1 1.9e-05 0.0021 11.5 0.1 25 37 34 46 29 51 0.88 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_50 - 225 adh_short PF00106.20 167 9e-21 67.6 1.0 1 1 1.4e-22 1.6e-20 66.8 1.0 2 163 5 160 4 164 0.87 # 75108 # 75782 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_19 - 399 CbiA PF01656.18 195 7.9e-21 67.4 0.0 1 1 1.5e-22 1.7e-20 66.3 0.0 1 143 111 293 111 324 0.75 # 28829 # 30025 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.551 1_93 - 89 SLBB PF10531.4 59 0.0014 11.7 0.1 1 1 1.8e-05 0.002 11.1 0.1 24 49 21 46 20 58 0.87 # 121526 # 121792 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.599 1_61 - 253 AAA_29 PF13555.1 62 5e-05 15.9 0.1 1 1 8.4e-07 9.6e-05 15.0 0.1 22 40 27 45 16 54 0.82 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_50 - 225 KR PF08659.5 181 7.4e-05 15.5 0.7 1 1 2.3e-06 0.00027 13.7 0.7 3 162 6 158 5 166 0.77 # 75108 # 75782 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_22 - 441 Pyr_redox_3 PF13738.1 203 1.3e-19 64.1 0.0 1 2 1.5e-18 1.7e-16 53.9 0.0 73 201 87 218 55 220 0.82 # 33810 # 35132 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_22 - 441 Pyr_redox_3 PF13738.1 203 1.3e-19 64.1 0.0 2 2 0.00015 0.017 8.3 0.0 100 144 290 337 229 367 0.74 # 33810 # 35132 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_61 - 253 DUF258 PF03193.11 161 0.00026 13.3 0.0 1 1 3.4e-06 0.00039 12.7 0.0 19 59 11 52 2 96 0.79 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_19 - 399 AAA_31 PF13614.1 157 3.4e-05 16.9 0.0 1 2 0.0016 0.19 4.8 0.0 8 53 116 166 109 209 0.79 # 28829 # 30025 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.551 1_19 - 399 AAA_31 PF13614.1 157 3.4e-05 16.9 0.0 2 2 5e-05 0.0057 9.7 0.0 109 148 236 274 234 279 0.87 # 28829 # 30025 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.551 1_61 - 253 AAA_33 PF13671.1 143 0.00012 15.0 0.0 1 1 6.6e-06 0.00075 12.5 0.0 4 98 33 187 31 199 0.71 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_61 - 253 ABC_tran PF00005.22 137 2e-35 115.2 0.0 1 1 2.3e-37 2.6e-35 114.8 0.0 1 137 18 167 18 167 0.96 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_22 - 441 K_oxygenase PF13434.1 341 1.3e-117 385.5 0.0 1 1 1.4e-119 1.6e-117 385.2 0.0 1 340 2 332 2 333 0.96 # 33810 # 35132 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_50 - 225 THF_DHG_CYH_C PF02882.14 161 0.00031 12.9 0.3 1 1 4.9e-06 0.00056 12.1 0.3 37 79 4 46 1 111 0.59 # 75108 # 75782 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_3 - 403 Podovirus_Gp16 PF05894.7 333 0.00023 13.6 0.0 1 1 3e-06 0.00034 13.1 0.0 16 92 202 280 194 301 0.77 # 854 # 2062 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_50 - 225 RmlD_sub_bind PF04321.12 287 2.7e-05 16.2 0.1 1 1 3.3e-07 3.8e-05 15.7 0.1 2 88 5 113 4 131 0.79 # 75108 # 75782 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_50 - 225 NAD_binding_10 PF13460.1 183 2.8e-11 36.8 0.3 1 1 3.9e-13 4.4e-11 36.2 0.3 1 82 6 92 6 208 0.80 # 75108 # 75782 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_50 - 225 adh_short_C2 PF13561.1 241 1.6e-11 37.5 0.0 1 1 1.8e-13 2.1e-11 37.1 0.0 5 183 12 181 9 194 0.78 # 75108 # 75782 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_61 - 253 SbcCD_C PF13558.1 90 0.0001 15.3 0.0 1 2 0.044 5 0.3 0.0 53 72 44 64 28 83 0.73 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_61 - 253 SbcCD_C PF13558.1 90 0.0001 15.3 0.0 2 2 4.3e-05 0.0049 9.9 0.0 28 89 134 182 117 183 0.73 # 91965 # 92723 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_51 - 1051 ResIII PF04851.10 184 6.2e-06 19.2 0.0 1 2 8.7e-07 9.9e-05 15.3 0.0 5 95 16 115 12 140 0.81 # 75789 # 78941 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_51 - 1051 ResIII PF04851.10 184 6.2e-06 19.2 0.0 2 2 0.017 1.9 1.3 0.0 147 183 260 304 216 305 0.79 # 75789 # 78941 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_22 - 441 FMO-like PF00743.14 532 3.4e-07 21.8 0.0 1 2 1.1e-07 1.3e-05 16.6 0.0 85 202 97 199 80 216 0.76 # 33810 # 35132 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_22 - 441 FMO-like PF00743.14 532 3.4e-07 21.8 0.0 2 2 0.0014 0.16 3.1 0.0 318 337 319 338 308 349 0.78 # 33810 # 35132 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_22 - 441 NAD_binding_9 PF13454.1 156 1.1e-06 21.6 4.4 1 3 2.2e-05 0.0025 10.7 0.1 61 154 63 149 39 151 0.65 # 33810 # 35132 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_22 - 441 NAD_binding_9 PF13454.1 156 1.1e-06 21.6 4.4 2 3 0.019 2.2 1.1 0.2 2 24 185 206 184 221 0.79 # 33810 # 35132 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_22 - 441 NAD_binding_9 PF13454.1 156 1.1e-06 21.6 4.4 3 3 8.4e-05 0.0095 8.8 0.0 122 155 293 331 272 332 0.79 # 33810 # 35132 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_50 - 225 Epimerase PF01370.16 236 6.6e-07 22.0 0.1 1 1 9.4e-09 1.1e-06 21.3 0.1 1 116 6 129 6 166 0.65 # 75108 # 75782 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_51 - 1051 DEAD PF00270.24 169 5.1e-08 25.7 0.1 1 2 4.4e-06 0.0005 12.7 0.0 15 112 37 135 17 146 0.74 # 75789 # 78941 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_51 - 1051 DEAD PF00270.24 169 5.1e-08 25.7 0.1 2 2 2.4e-05 0.0027 10.3 0.1 116 163 256 304 234 309 0.83 # 75789 # 78941 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_21 - 732 Plug PF07715.10 108 2.1e-22 72.6 3.0 1 1 2.9e-24 3.3e-22 72.0 2.0 3 107 43 144 41 145 0.95 # 31590 # 33785 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.548 1_38 - 162 RNA_helicase PF00910.17 107 0.00017 14.9 0.0 1 1 2.4e-06 0.00028 14.2 0.0 2 41 68 112 67 118 0.74 # 60201 # 60686 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_38 - 162 NACHT PF05729.7 166 0.00035 13.3 0.0 1 2 3.9e-05 0.0045 9.7 0.0 3 26 67 90 65 103 0.85 # 60201 # 60686 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_38 - 162 NACHT PF05729.7 166 0.00035 13.3 0.0 2 2 0.015 1.7 1.3 0.0 120 138 130 148 123 158 0.84 # 60201 # 60686 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_51 - 1051 AAA_25 PF13481.1 194 0.00011 14.7 0.8 1 1 3e-06 0.00034 13.1 0.1 112 168 229 288 203 296 0.76 # 75789 # 78941 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_51 - 1051 SNF2_N PF00176.18 299 8.7e-06 17.7 0.0 1 2 6.7e-05 0.0076 8.1 0.0 2 48 19 60 18 90 0.68 # 75789 # 78941 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_51 - 1051 SNF2_N PF00176.18 299 8.7e-06 17.7 0.0 2 2 0.00012 0.014 7.2 0.0 122 175 247 306 230 379 0.77 # 75789 # 78941 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1c1e57f0-e55d-491f-b1ac-24334cb09d4a # Target file: checkm_output/bins/pm1581/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1581/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1c1e57f0-e55d-491f-b1ac-24334cb09d4a checkm_output/bins/pm1581/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:22 2020 # [ok]