# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_141 - 265 Mg_chelatase PF01078.16 207 9.7e-05 15.3 0.0 1 1 1.4e-06 0.00025 14.0 0.0 10 92 16 98 9 105 0.81 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_53 - 910 UPF0020 PF01170.13 180 0.0005 13.4 0.0 1 2 0.0013 0.23 4.7 0.0 102 117 16 31 5 40 0.80 # 49955 # 52684 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_53 - 910 UPF0020 PF01170.13 180 0.0005 13.4 0.0 2 2 0.00059 0.1 5.8 0.0 27 47 162 182 158 226 0.89 # 49955 # 52684 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_141 - 265 cobW PF02492.14 178 0.0014 11.7 0.0 1 1 1.4e-05 0.0025 11.0 0.0 2 29 30 56 29 77 0.78 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 ABC_ATPase PF09818.4 448 0.00027 13.2 0.0 1 2 4.7e-05 0.0084 8.4 0.0 245 266 29 50 4 56 0.79 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 ABC_ATPase PF09818.4 448 0.00027 13.2 0.0 2 2 0.0031 0.54 2.4 0.0 323 352 139 168 126 218 0.80 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_174 - 403 MipZ PF09140.6 261 1.6e-06 21.1 0.5 1 2 0.00013 0.023 7.4 0.0 2 51 113 167 112 193 0.72 # 160649 # 161857 # -1 # ID=1_174;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_174 - 403 MipZ PF09140.6 261 1.6e-06 21.1 0.5 2 2 6.9e-06 0.0012 11.6 0.1 90 135 239 284 223 289 0.90 # 160649 # 161857 # -1 # ID=1_174;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_124 - 260 3HCDH_N PF02737.13 180 4.1e-05 17.0 0.4 1 1 1e-06 6.1e-05 16.4 0.4 3 45 6 49 3 85 0.77 # 110871 # 111650 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_105 - 260 3HCDH_N PF02737.13 180 5.7e-05 16.5 0.4 1 1 1.4e-06 8.5e-05 16.0 0.4 3 64 6 69 3 86 0.71 # 95515 # 96294 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_31 - 336 3HCDH_N PF02737.13 180 0.00065 13.1 0.1 1 1 1.6e-05 0.00095 12.5 0.1 1 39 163 201 163 247 0.70 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_53 - 910 UvrD_C_2 PF13538.1 104 7.5e-09 29.4 0.2 1 2 0.025 4.4 1.3 0.0 4 38 294 328 291 358 0.68 # 49955 # 52684 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_53 - 910 UvrD_C_2 PF13538.1 104 7.5e-09 29.4 0.2 2 2 7.9e-10 1.4e-07 25.4 0.1 4 103 409 513 406 514 0.67 # 49955 # 52684 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_31 - 336 Pyr_redox_2 PF07992.9 201 0.00025 14.7 0.5 1 1 2.7e-06 0.00047 13.8 0.6 1 29 163 195 163 261 0.83 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_117 - 123 DUF87 PF01935.12 229 1.3e-06 22.1 0.0 1 1 9.4e-09 1.7e-06 21.7 0.0 10 62 52 102 45 103 0.92 # 104800 # 105168 # 1 # ID=1_117;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.653 1_141 - 265 AAA_22 PF13401.1 131 9.1e-07 22.8 0.5 1 1 2.9e-08 5.2e-06 20.4 0.5 5 122 29 195 27 203 0.62 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 MutS_V PF00488.16 235 0.0011 12.1 0.0 1 1 1.3e-05 0.0023 11.0 0.0 30 64 15 49 3 53 0.77 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 SRP54 PF00448.17 196 0.00035 13.8 0.0 1 1 3.1e-06 0.00056 13.1 0.0 2 40 29 67 28 83 0.88 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_148 - 522 AAA_15 PF13175.1 415 3.9e-17 56.0 15.2 1 2 8e-07 4.7e-05 16.2 0.6 9 56 8 73 5 128 0.72 # 136088 # 137653 # 1 # ID=1_148;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_148 - 522 AAA_15 PF13175.1 415 3.9e-17 56.0 15.2 2 2 1.3e-16 7.9e-15 48.4 2.7 278 414 159 295 135 296 0.71 # 136088 # 137653 # 1 # ID=1_148;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_171 - 312 AAA_15 PF13175.1 415 3.1e-10 33.3 0.0 1 1 8.5e-12 5e-10 32.6 0.0 333 414 78 151 26 152 0.68 # 157677 # 158612 # -1 # ID=1_171;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.556 1_141 - 265 AAA_15 PF13175.1 415 2.8e-07 23.6 0.0 1 2 9.2e-06 0.00054 12.7 0.0 25 45 24 51 4 72 0.73 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 AAA_15 PF13175.1 415 2.8e-07 23.6 0.0 2 2 0.00013 0.0078 8.9 0.0 373 410 160 197 146 202 0.88 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_31 - 336 NAD_binding_7 PF13241.1 103 0.00046 14.2 0.0 1 1 4.4e-06 0.00078 13.4 0.0 7 75 161 241 159 255 0.64 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_53 - 910 N6_N4_Mtase PF01555.13 231 1.6e-24 80.4 0.0 1 2 9.8e-24 1.7e-21 70.4 0.0 1 209 21 181 21 183 0.87 # 49955 # 52684 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_53 - 910 N6_N4_Mtase PF01555.13 231 1.6e-24 80.4 0.0 2 2 0.083 15 -1.3 0.0 97 152 503 552 487 598 0.71 # 49955 # 52684 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_148 - 522 AAA_21 PF13304.1 303 3e-23 76.8 15.1 1 2 1.1e-24 6.7e-23 75.7 9.3 1 303 35 297 35 297 0.78 # 136088 # 137653 # 1 # ID=1_148;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_148 - 522 AAA_21 PF13304.1 303 3e-23 76.8 15.1 2 2 0.008 0.47 4.0 0.3 36 90 458 512 450 519 0.86 # 136088 # 137653 # 1 # ID=1_148;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_141 - 265 AAA_21 PF13304.1 303 8e-16 52.5 0.0 1 2 2.3e-09 1.3e-07 25.5 0.0 2 25 31 58 30 90 0.78 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 AAA_21 PF13304.1 303 8e-16 52.5 0.0 2 2 2.8e-09 1.7e-07 25.2 0.0 220 301 122 201 94 202 0.87 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_171 - 312 AAA_21 PF13304.1 303 2.6e-05 18.0 0.2 1 1 6.9e-07 4.1e-05 17.3 0.2 262 301 114 151 99 153 0.93 # 157677 # 158612 # -1 # ID=1_171;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.556 1_31 - 336 ADH_zinc_N_2 PF13602.1 127 1.3e-07 26.3 0.0 1 1 2e-09 3.6e-07 24.9 0.0 1 127 203 329 203 329 0.72 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_141 - 265 Miro PF08477.8 119 8.4e-06 20.0 0.0 1 1 1.1e-07 2e-05 18.8 0.0 2 26 31 58 30 123 0.83 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_31 - 336 ADH_zinc_N PF00107.21 130 4.5e-23 75.0 0.4 1 1 5.5e-25 9.8e-23 73.9 0.1 1 127 171 293 171 295 0.96 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_56 - 608 NAD_synthase PF02540.12 242 2.1e-08 27.0 0.0 1 1 2.1e-10 3.7e-08 26.2 0.0 3 138 238 373 236 375 0.82 # 54637 # 56460 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_148 - 522 T2SE PF00437.15 272 0.0017 10.9 0.0 1 1 1.8e-05 0.0032 10.1 0.0 111 148 15 53 2 65 0.65 # 136088 # 137653 # 1 # ID=1_148;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_141 - 265 G-alpha PF00503.15 389 0.00036 13.0 0.0 1 1 3.1e-06 0.00054 12.4 0.0 62 86 32 56 27 78 0.91 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_63 - 345 Shikimate_DH PF01488.15 135 2.4e-07 24.6 0.0 1 2 0.07 6.2 0.6 0.0 109 126 85 102 65 108 0.82 # 62404 # 63438 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.455 1_63 - 345 Shikimate_DH PF01488.15 135 2.4e-07 24.6 0.0 2 2 2.4e-08 2.2e-06 21.6 0.0 10 120 141 249 131 261 0.76 # 62404 # 63438 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.455 1_31 - 336 Shikimate_DH PF01488.15 135 0.00012 16.0 0.0 1 1 2.1e-06 0.00019 15.3 0.0 10 87 159 235 151 264 0.77 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_141 - 265 Zeta_toxin PF06414.7 201 0.00039 13.3 0.0 1 1 3.8e-06 0.00067 12.5 0.0 17 50 29 63 24 70 0.90 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_105 - 260 F420_oxidored PF03807.12 96 0.00023 15.3 0.5 1 1 2.4e-05 0.0014 12.8 0.7 4 67 7 71 3 77 0.75 # 95515 # 96294 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_124 - 260 F420_oxidored PF03807.12 96 0.00085 13.5 0.3 1 1 6.7e-05 0.004 11.3 0.4 4 48 7 52 3 77 0.72 # 110871 # 111650 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_63 - 345 F420_oxidored PF03807.12 96 0.00097 13.3 0.0 1 1 4.2e-05 0.0025 12.0 0.0 2 69 146 216 145 231 0.88 # 62404 # 63438 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.455 1_141 - 265 SMC_N PF02463.14 220 4.4e-09 29.5 0.0 1 1 7e-09 6.2e-07 22.5 0.0 24 198 28 197 10 216 0.69 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_148 - 522 SMC_N PF02463.14 220 2.1e-08 27.4 0.5 1 1 1.2e-08 1e-06 21.8 0.5 22 196 31 289 20 303 0.59 # 136088 # 137653 # 1 # ID=1_148;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_174 - 403 VirC1 PF07015.6 231 0.00057 12.7 0.0 1 2 0.039 7 -0.7 0.0 4 24 114 134 112 141 0.80 # 160649 # 161857 # -1 # ID=1_174;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_174 - 403 VirC1 PF07015.6 231 0.00057 12.7 0.0 2 2 1.7e-05 0.003 10.3 0.0 81 140 245 305 215 347 0.81 # 160649 # 161857 # -1 # ID=1_174;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_174 - 403 Fer4_NifH PF00142.13 273 9.5e-05 15.3 0.0 1 1 8.7e-07 0.00015 14.7 0.0 8 72 120 189 114 200 0.77 # 160649 # 161857 # -1 # ID=1_174;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_141 - 265 Arch_ATPase PF01637.13 234 0.00065 13.1 0.0 1 1 7e-06 0.0012 12.2 0.0 21 44 29 52 23 87 0.82 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_63 - 345 OCD_Mu_crystall PF02423.10 314 6.3e-39 127.2 0.0 1 1 4.6e-41 8.1e-39 126.9 0.0 19 308 26 321 17 325 0.86 # 62404 # 63438 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.455 1_56 - 608 QueC PF06508.8 210 9.2e-06 18.8 0.0 1 1 1.2e-07 2.1e-05 17.6 0.0 5 59 261 316 258 326 0.88 # 54637 # 56460 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_141 - 265 AAA_16 PF13191.1 185 9.2e-08 26.0 0.4 1 1 1.1e-09 1.9e-07 24.9 0.4 25 161 29 205 13 214 0.55 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_148 - 522 AAA_23 PF13476.1 202 6.6e-08 26.8 7.7 1 1 1.6e-09 1.4e-07 25.7 7.5 2 88 6 156 5 293 0.61 # 136088 # 137653 # 1 # ID=1_148;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_141 - 265 AAA_23 PF13476.1 202 4.6e-05 17.5 0.0 1 1 9.1e-07 8.1e-05 16.7 0.0 19 39 28 48 11 50 0.83 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_105 - 260 adh_short PF00106.20 167 1.1e-25 84.1 1.6 1 1 2.4e-27 1.4e-25 83.8 1.6 2 166 4 172 3 173 0.91 # 95515 # 96294 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_124 - 260 adh_short PF00106.20 167 2.6e-25 83.0 1.3 1 1 5.3e-27 3.1e-25 82.7 1.3 2 166 4 172 3 173 0.91 # 110871 # 111650 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_29 - 149 adh_short PF00106.20 167 3.9e-05 17.3 0.1 1 1 9.1e-07 5.4e-05 16.9 0.1 115 165 11 64 1 66 0.73 # 30076 # 30522 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.550 1_148 - 522 AAA_13 PF13166.1 712 2.1e-07 23.4 0.6 1 2 2.6e-08 1.6e-06 20.6 0.1 15 69 32 95 19 104 0.71 # 136088 # 137653 # 1 # ID=1_148;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_148 - 522 AAA_13 PF13166.1 712 2.1e-07 23.4 0.6 2 2 0.023 1.4 0.9 0.1 556 579 276 300 268 332 0.69 # 136088 # 137653 # 1 # ID=1_148;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_141 - 265 AAA_13 PF13166.1 712 4.5e-05 15.7 0.0 1 1 1.4e-06 8.1e-05 14.9 0.0 15 43 27 55 13 80 0.85 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_20 - 554 AAA_13 PF13166.1 712 0.02 6.9 17.1 1 1 2.4e-05 0.0014 10.8 10.7 280 464 270 454 256 516 0.66 # 20811 # 22472 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_31 - 336 GFO_IDH_MocA PF01408.17 120 0.00011 16.5 0.0 1 1 1.5e-06 0.00027 15.2 0.0 2 90 163 254 163 256 0.72 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_174 - 403 CbiA PF01656.18 195 6.2e-24 78.2 0.0 1 1 7.8e-26 1.4e-23 77.0 0.0 1 147 114 300 114 348 0.77 # 160649 # 161857 # -1 # ID=1_174;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_141 - 265 AAA_14 PF13173.1 128 7.2e-05 16.4 0.0 1 1 1.2e-06 0.00021 14.9 0.0 3 37 29 63 27 84 0.77 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 AAA_29 PF13555.1 62 1.2e-06 21.7 0.0 1 1 2.5e-08 2.2e-06 20.9 0.0 21 50 27 55 16 60 0.80 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_148 - 522 AAA_29 PF13555.1 62 2e-06 21.0 0.0 1 1 6.3e-08 5.6e-06 19.6 0.0 25 42 35 52 19 56 0.85 # 136088 # 137653 # 1 # ID=1_148;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_141 - 265 AAA PF00004.24 132 0.00015 15.7 0.0 1 1 1.5e-06 0.00027 14.9 0.0 2 47 32 79 31 134 0.81 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_124 - 260 KR PF08659.5 181 3.7e-08 26.9 0.5 1 1 7.2e-10 6.4e-08 26.2 0.5 3 152 5 157 4 185 0.86 # 110871 # 111650 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_105 - 260 KR PF08659.5 181 9.2e-07 22.4 0.6 1 1 1.9e-08 1.6e-06 21.6 0.6 3 152 5 157 4 185 0.83 # 95515 # 96294 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_70 - 105 Ribosomal_L20 PF00453.13 108 0.00019 15.1 0.0 1 1 1.7e-06 0.0003 14.4 0.0 46 98 7 60 4 68 0.91 # 69448 # 69762 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_141 - 265 Sigma54_activat PF00158.21 168 0.0011 12.2 0.1 1 2 6.1e-05 0.011 8.9 0.0 7 53 13 59 8 73 0.84 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 Sigma54_activat PF00158.21 168 0.0011 12.2 0.1 2 2 0.017 3 1.0 0.1 94 119 157 183 138 191 0.76 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 MMR_HSR1 PF01926.18 116 0.00076 13.2 0.0 1 1 1.1e-05 0.002 11.8 0.0 2 21 31 50 30 87 0.85 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 DUF258 PF03193.11 161 4.2e-06 19.7 0.1 1 1 3.4e-08 6.1e-06 19.2 0.1 15 64 7 57 1 79 0.80 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_118 - 423 TraG-D_C PF12696.2 128 5.5e-12 39.4 0.0 1 1 4.5e-14 8e-12 38.9 0.0 5 125 227 352 223 355 0.82 # 105255 # 106523 # 1 # ID=1_118;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.615 1_56 - 608 Asn_synthase PF00733.16 255 5.2e-71 232.8 0.2 1 1 4.7e-73 8.3e-71 232.1 0.2 1 255 239 537 239 537 0.97 # 54637 # 56460 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_31 - 336 NAD_binding_2 PF03446.10 163 1.6e-06 21.8 0.0 1 1 2.8e-08 2.4e-06 21.2 0.0 3 81 163 247 161 264 0.84 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_124 - 260 NAD_binding_2 PF03446.10 163 0.00098 12.7 0.1 1 1 1.6e-05 0.0015 12.1 0.1 6 41 7 43 1 75 0.82 # 110871 # 111650 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_174 - 403 AAA_31 PF13614.1 157 3.3e-07 24.1 0.1 1 2 8.5e-06 0.0015 12.2 0.0 2 90 113 206 112 220 0.76 # 160649 # 161857 # -1 # ID=1_174;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_174 - 403 AAA_31 PF13614.1 157 3.3e-07 24.1 0.1 2 2 5.8e-05 0.01 9.5 0.0 109 148 239 277 233 282 0.85 # 160649 # 161857 # -1 # ID=1_174;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_141 - 265 AAA_33 PF13671.1 143 0.0004 14.0 0.1 1 1 3.3e-06 0.00058 13.5 0.1 1 23 30 52 30 194 0.86 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_53 - 910 Methyltransf_26 PF13659.1 117 1.3e-07 25.4 0.1 1 2 2.5e-06 0.00044 14.0 0.0 54 112 4 69 2 74 0.68 # 49955 # 52684 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_53 - 910 Methyltransf_26 PF13659.1 117 1.3e-07 25.4 0.1 2 2 0.00033 0.058 7.2 0.0 2 19 165 182 164 351 0.80 # 49955 # 52684 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_31 - 336 2-Hacid_dh_C PF02826.14 178 3.3e-06 20.1 0.1 1 1 3.1e-08 5.4e-06 19.3 0.1 35 80 160 205 147 245 0.75 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_31 - 336 XdhC_C PF13478.1 136 2.6e-05 18.3 0.0 1 1 8.6e-07 7.6e-05 16.8 0.0 1 67 164 235 164 259 0.75 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_124 - 260 XdhC_C PF13478.1 136 0.001 13.1 0.0 1 1 1.8e-05 0.0016 12.4 0.0 1 69 6 78 6 92 0.67 # 110871 # 111650 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_53 - 910 AAA_30 PF13604.1 196 5.7e-06 19.7 0.5 1 2 1.7e-06 0.00015 15.1 0.0 136 187 179 232 176 238 0.91 # 49955 # 52684 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_53 - 910 AAA_30 PF13604.1 196 5.7e-06 19.7 0.5 2 2 0.028 2.5 1.3 0.1 143 171 402 430 399 452 0.73 # 49955 # 52684 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_141 - 265 AAA_30 PF13604.1 196 0.00065 13.0 0.2 1 1 1.7e-05 0.0015 11.8 0.0 5 50 15 60 11 79 0.78 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_31 - 336 ApbA PF02558.11 151 8.1e-05 15.8 0.0 1 1 8.3e-07 0.00015 15.0 0.0 1 86 164 244 164 257 0.79 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_141 - 265 DUF2813 PF11398.3 373 4.4e-05 16.4 0.0 1 1 3.9e-07 6.9e-05 15.7 0.0 17 70 23 76 17 82 0.82 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_31 - 336 CoA_binding PF02629.14 96 0.00076 13.7 0.0 1 1 9.1e-06 0.0016 12.7 0.0 5 91 163 254 161 258 0.69 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_174 - 403 RRM_2 PF04059.7 97 0.0019 11.9 0.0 1 1 2.9e-05 0.0051 10.6 0.0 7 36 225 254 220 261 0.89 # 160649 # 161857 # -1 # ID=1_174;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_141 - 265 ABC_tran PF00005.22 137 3.7e-32 105.2 0.0 1 1 5.7e-34 5e-32 104.8 0.0 2 136 19 166 18 167 0.96 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_148 - 522 ABC_tran PF00005.22 137 1.8e-05 18.8 0.3 1 1 5e-07 4.5e-05 17.5 0.3 11 36 33 58 29 290 0.87 # 136088 # 137653 # 1 # ID=1_148;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_148 - 522 TIGR03263 TIGR03263 180 0.00031 13.8 0.0 1 1 3.4e-06 0.00059 12.9 0.0 3 57 35 88 33 97 0.73 # 136088 # 137653 # 1 # ID=1_148;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 1_141 - 265 ATP-synt_ab PF00006.20 215 9.2e-05 15.7 0.0 1 1 1.3e-06 0.00024 14.4 0.0 4 63 19 78 16 117 0.85 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_31 - 336 NAD_binding_10 PF13460.1 183 4.9e-05 17.1 0.1 1 1 3.9e-07 6.9e-05 16.6 0.1 1 131 164 291 164 300 0.65 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_117 - 123 AAA_10 PF12846.2 304 4.7e-05 16.6 0.0 1 1 3.7e-07 6.6e-05 16.1 0.0 2 39 65 102 64 107 0.95 # 104800 # 105168 # 1 # ID=1_117;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.653 1_29 - 149 adh_short_C2 PF13561.1 241 1.1e-22 74.6 0.0 1 1 1.9e-24 1.1e-22 74.6 0.0 126 240 24 142 1 143 0.88 # 30076 # 30522 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.550 1_124 - 260 adh_short_C2 PF13561.1 241 5.1e-21 69.2 0.0 1 1 1.1e-22 6.8e-21 68.8 0.0 6 239 12 255 8 256 0.87 # 110871 # 111650 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_105 - 260 adh_short_C2 PF13561.1 241 3.8e-17 56.5 0.0 1 1 9.3e-19 5.5e-17 56.0 0.0 7 239 13 255 9 256 0.88 # 95515 # 96294 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_141 - 265 SbcCD_C PF13558.1 90 0.0002 15.0 0.2 1 1 1.3e-05 0.0023 11.6 0.2 21 89 127 182 102 183 0.73 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_31 - 336 ThiF PF00899.16 136 0.00059 13.4 0.4 1 1 1.4e-05 0.0025 11.4 0.9 4 26 163 185 160 193 0.88 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_141 - 265 Adeno_IVa2 PF02456.10 370 0.00044 12.6 0.1 1 1 5.6e-06 0.00099 11.5 0.0 77 121 17 60 3 70 0.73 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_124 - 260 Epimerase PF01370.16 236 0.00031 13.9 0.0 1 2 2.1e-05 0.0019 11.4 0.1 2 65 6 76 5 100 0.74 # 110871 # 111650 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_124 - 260 Epimerase PF01370.16 236 0.00031 13.9 0.0 2 2 0.057 5.1 0.1 0.0 137 170 151 187 134 195 0.80 # 110871 # 111650 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_105 - 260 Epimerase PF01370.16 236 0.00062 12.9 0.1 1 1 2.4e-05 0.0022 11.1 0.1 2 64 6 75 5 191 0.79 # 95515 # 96294 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_141 - 265 DUF815 PF05673.8 250 0.00043 12.9 0.0 1 1 4e-06 0.00071 12.2 0.0 53 81 28 56 13 86 0.76 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_176 - 56 UBX PF00789.15 82 5e-06 20.3 0.0 1 1 3e-08 5.4e-06 20.2 0.0 21 60 4 41 2 53 0.85 # 164261 # 164428 # -1 # ID=1_176;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.440 1_31 - 336 Pyr_redox PF00070.22 80 0.00012 16.1 0.8 1 1 1.4e-06 0.00025 15.2 0.8 1 34 163 196 163 238 0.84 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_117 - 123 TrwB_AAD_bind PF10412.4 386 3.3e-08 26.2 0.1 1 1 5e-10 4.4e-08 25.8 0.1 7 56 56 105 53 109 0.92 # 104800 # 105168 # 1 # ID=1_117;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.653 1_118 - 423 TrwB_AAD_bind PF10412.4 386 6.2e-06 18.7 0.0 1 1 9.3e-08 8.3e-06 18.3 0.0 196 377 167 365 147 373 0.76 # 105255 # 106523 # 1 # ID=1_118;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.615 1_141 - 265 Sigma54_activ_2 PF14532.1 138 0.00065 13.5 0.2 1 2 4.8e-05 0.0085 9.9 0.0 10 77 17 83 10 90 0.79 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 Sigma54_activ_2 PF14532.1 138 0.00065 13.5 0.2 2 2 0.027 4.8 0.9 0.0 69 109 156 197 120 207 0.68 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_145 - 697 Plug PF07715.10 108 1.6e-14 47.9 1.7 1 1 2.4e-16 4.3e-14 46.5 1.3 3 108 40 143 38 143 0.93 # 130316 # 132406 # -1 # ID=1_145;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_141 - 265 RNA_helicase PF00910.17 107 0.0014 12.6 0.0 1 1 2.3e-05 0.0041 11.0 0.0 2 20 32 50 31 76 0.82 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_124 - 260 TrkA_N PF02254.13 116 0.00025 14.8 0.2 1 1 4.9e-06 0.00043 14.0 0.2 2 53 6 66 5 77 0.72 # 110871 # 111650 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_31 - 336 TrkA_N PF02254.13 116 0.0017 12.1 0.0 1 1 7.5e-05 0.0066 10.2 0.0 1 43 164 206 164 247 0.83 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_31 - 336 IlvN PF07991.7 165 0.00062 12.9 0.0 1 1 7.2e-06 0.0013 11.8 0.0 5 40 162 197 159 218 0.82 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_31 - 336 AlaDh_PNT_C PF01262.16 168 6.6e-05 16.2 0.1 1 1 1.5e-06 0.00013 15.3 0.1 22 66 163 207 151 221 0.87 # 31342 # 32349 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_6 - 351 AlaDh_PNT_C PF01262.16 168 0.00085 12.6 0.0 1 1 1.8e-05 0.0016 11.7 0.0 21 70 161 212 145 230 0.79 # 5524 # 6576 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_141 - 265 NACHT PF05729.7 166 8.1e-06 19.3 0.9 1 2 1.3e-06 0.00023 14.5 0.1 2 22 30 50 29 54 0.90 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 NACHT PF05729.7 166 8.1e-06 19.3 0.9 2 2 0.0028 0.49 3.7 0.0 76 99 50 73 48 113 0.75 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 AAA_28 PF13521.1 163 4.4e-05 17.2 0.1 1 1 4.5e-07 7.9e-05 16.4 0.1 3 23 32 52 30 130 0.83 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 AAA_5 PF07728.9 139 0.00014 15.3 0.2 1 2 7.8e-06 0.0014 12.1 0.0 3 26 32 56 30 72 0.83 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_141 - 265 AAA_5 PF07728.9 139 0.00014 15.3 0.2 2 2 0.022 3.9 0.9 0.0 14 52 148 191 144 217 0.71 # 126557 # 127351 # -1 # ID=1_141;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9327d2e7-f3c9-40d4-a5a5-e3a6b5163599 # Target file: checkm_output/bins/pm1573/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1573/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9327d2e7-f3c9-40d4-a5a5-e3a6b5163599 checkm_output/bins/pm1573/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:15 2020 # [ok]