# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 220 Methyltransf_12 PF08242.7 99 2.8e-15 48.0 0.2 1 2 6.7e-16 2.2e-14 45.1 0.0 1 99 54 152 54 152 0.94 # 25317 # 25976 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 220 Methyltransf_12 PF08242.7 99 2.8e-15 48.0 0.2 2 2 0.047 1.5 0.7 0.0 46 70 178 202 155 212 0.77 # 25317 # 25976 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_23 - 322 Saccharop_dh PF03435.13 386 1.2e-06 19.0 0.0 1 2 3.9e-07 1.3e-05 15.6 0.1 1 116 26 182 26 200 0.71 # 20820 # 21785 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.641 1_23 - 322 Saccharop_dh PF03435.13 386 1.2e-06 19.0 0.0 2 2 0.022 0.71 -0.0 0.0 273 307 264 298 242 307 0.78 # 20820 # 21785 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.641 1_6 - 209 IstB_IS21 PF01695.12 178 0.00026 11.7 0.3 1 1 2e-05 0.00063 10.5 0.3 52 83 9 40 3 103 0.91 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 MipZ PF09140.6 261 8.8e-16 49.0 1.2 1 2 7.9e-13 2.5e-11 34.4 0.1 2 45 5 47 4 63 0.84 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 MipZ PF09140.6 261 8.8e-16 49.0 1.2 2 2 1.4e-06 4.6e-05 13.8 0.1 91 141 70 120 51 148 0.82 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 YhjQ PF06564.7 244 0.00012 12.8 0.1 1 2 5.3e-05 0.0017 9.0 0.0 10 41 12 43 4 50 0.90 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 YhjQ PF06564.7 244 0.00012 12.8 0.1 2 2 0.0091 0.29 1.7 0.0 115 150 75 110 46 150 0.74 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_28 - 220 Methyltransf_18 PF12847.2 112 1.9e-11 35.9 0.0 1 1 1.2e-12 3.9e-11 34.9 0.0 4 107 52 152 50 156 0.86 # 25317 # 25976 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_6 - 209 AAA_22 PF13401.1 131 0.00024 12.6 0.0 1 1 1.3e-05 0.00041 11.8 0.0 7 109 7 103 1 131 0.81 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 DUF1611 PF07755.6 301 1.3e-06 18.5 1.2 1 2 1e-07 3.3e-06 17.2 0.1 124 201 15 93 11 103 0.68 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 DUF1611 PF07755.6 301 1.3e-06 18.5 1.2 2 2 0.029 0.93 -0.7 0.1 246 292 123 166 111 173 0.70 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_28 - 220 Methyltransf_11 PF08241.7 95 3.1e-13 41.4 0.0 1 1 1.9e-14 6.2e-13 40.5 0.0 1 93 54 152 54 153 0.92 # 25317 # 25976 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_6 - 209 SRP54 PF00448.17 196 4.1e-06 17.6 3.4 1 1 5.8e-07 1.8e-05 15.5 3.4 5 39 8 42 4 205 0.92 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 AAA_17 PF13207.1 121 6.7e-05 15.0 0.0 1 1 2.6e-06 8.3e-05 14.7 0.0 6 78 11 103 8 176 0.70 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_4 - 281 AAA_21 PF13304.1 303 6.2e-08 24.1 0.0 1 1 2.5e-09 7.9e-08 23.8 0.0 233 301 76 142 20 144 0.82 # 1913 # 2755 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_6 - 209 MobB PF03205.9 140 1e-06 19.8 1.2 1 1 4.3e-07 1.4e-05 16.1 1.2 7 107 11 93 5 105 0.68 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_23 - 322 Semialdhyde_dh PF01118.19 121 0.0003 12.4 0.3 1 2 4.7e-05 0.0015 10.2 0.0 1 100 25 124 25 142 0.84 # 20820 # 21785 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.641 1_23 - 322 Semialdhyde_dh PF01118.19 121 0.0003 12.4 0.3 2 2 0.099 3.2 -0.6 0.2 3 12 145 154 143 156 0.87 # 20820 # 21785 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.641 1_6 - 209 ArsA_ATPase PF02374.10 305 3.1e-15 47.2 2.6 1 3 3e-16 9.6e-15 45.6 0.1 5 50 8 53 3 64 0.90 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 ArsA_ATPase PF02374.10 305 3.1e-15 47.2 2.6 2 3 0.013 0.41 0.9 0.1 118 135 68 86 58 93 0.71 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 ArsA_ATPase PF02374.10 305 3.1e-15 47.2 2.6 3 3 0.06 1.9 -1.4 0.0 133 171 113 152 112 180 0.52 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_23 - 322 Shikimate_DH PF01488.15 135 3.8e-05 15.1 0.2 1 1 2.1e-06 6.7e-05 14.3 0.2 7 36 18 47 12 53 0.87 # 20820 # 21785 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.641 1_6 - 209 Methyltransf_24 PF13578.1 106 7.6e-05 14.9 0.0 1 1 5.3e-06 0.00017 13.8 0.0 7 89 17 97 14 104 0.76 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_4 - 281 SMC_N PF02463.14 220 2.6e-08 24.6 0.1 1 1 1.1e-09 3.7e-08 24.1 0.1 79 212 23 151 5 159 0.73 # 1913 # 2755 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_6 - 209 VirC1 PF07015.6 231 4.4e-14 43.4 0.6 1 1 3.4e-15 1.1e-13 42.1 0.6 2 182 4 174 3 193 0.79 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 Fer4_NifH PF00142.13 273 1.1e-09 29.1 0.1 1 1 6.1e-11 2e-09 28.3 0.1 6 64 10 68 4 97 0.73 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 AAA_18 PF13238.1 129 2.4e-05 16.0 0.0 1 1 1.2e-06 3.7e-05 15.3 0.0 2 84 8 89 8 107 0.73 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 CbiA PF01656.18 195 1.1e-31 101.1 0.6 1 1 5.5e-33 1.8e-31 100.4 0.6 1 171 6 154 6 173 0.76 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_28 - 220 Methyltransf_25 PF13649.1 101 5.9e-08 24.4 0.0 1 1 3e-09 9.5e-08 23.7 0.0 2 82 54 129 53 150 0.76 # 25317 # 25976 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_25 - 66 ThiS PF02597.15 77 2.1e-12 38.7 0.0 1 1 7.7e-14 2.5e-12 38.5 0.0 18 77 11 65 3 65 0.89 # 22563 # 22760 # -1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_6 - 209 AAA_31 PF13614.1 157 2.2e-13 41.7 0.1 1 2 9.5e-13 3e-11 34.8 0.0 1 63 4 66 4 76 0.94 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 AAA_31 PF13614.1 157 2.2e-13 41.7 0.1 2 2 0.00056 0.018 6.3 0.1 98 152 58 111 54 115 0.76 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 NTPase_1 PF03266.10 168 0.00035 11.6 1.9 1 2 2.4e-05 0.00077 10.5 0.5 3 31 8 36 6 76 0.86 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 NTPase_1 PF03266.10 168 0.00035 11.6 1.9 2 2 0.057 1.8 -0.5 0.0 75 93 150 168 119 176 0.57 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 KTI12 PF08433.5 270 2.1e-05 15.1 0.0 1 1 1.2e-06 3.7e-05 14.3 0.0 8 81 11 88 7 92 0.80 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_28 - 220 Methyltransf_26 PF13659.1 117 1.1e-08 26.5 0.0 1 1 5.2e-10 1.7e-08 25.9 0.0 5 76 54 121 51 215 0.89 # 25317 # 25976 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_23 - 322 2-Hacid_dh_C PF02826.14 178 0.00019 11.9 0.0 1 1 1.3e-05 0.00042 10.8 0.0 28 73 15 61 1 77 0.73 # 20820 # 21785 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.641 1_28 - 220 MTS PF05175.9 170 6.6e-13 39.7 0.3 1 1 3.9e-14 1.3e-12 38.7 0.1 21 136 39 152 36 159 0.89 # 25317 # 25976 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_4 - 281 ABC_tran PF00005.22 137 6.9e-22 69.5 0.1 1 2 2.2e-21 6.9e-20 63.1 0.0 44 137 3 108 1 108 0.88 # 1913 # 2755 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_4 - 281 ABC_tran PF00005.22 137 6.9e-22 69.5 0.1 2 2 0.0023 0.075 4.6 0.0 36 92 158 267 145 279 0.68 # 1913 # 2755 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_28 - 220 Methyltransf_9 PF08003.6 315 6.1e-05 13.1 0.0 1 1 2.2e-06 7e-05 12.9 0.0 95 168 30 98 11 165 0.74 # 25317 # 25976 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_6 - 209 AAA_19 PF13245.1 76 3.7e-05 14.8 2.0 1 2 1.9e-06 6e-05 14.1 0.1 14 48 8 38 3 45 0.85 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 AAA_19 PF13245.1 76 3.7e-05 14.8 2.0 2 2 0.088 2.8 -0.8 0.2 29 63 118 158 115 172 0.60 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 AAA_10 PF12846.2 304 2.6e-06 18.3 0.0 1 1 1.8e-07 3e-06 18.1 0.0 6 51 9 56 6 180 0.81 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_4 - 281 AAA_10 PF12846.2 304 1.2e-05 16.1 0.0 1 1 1e-06 1.7e-05 15.6 0.0 214 263 75 140 5 146 0.72 # 1913 # 2755 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_28 - 220 NodS PF05401.6 201 2.8e-07 21.4 0.0 1 1 1.2e-08 3.8e-07 21.0 0.0 16 146 20 160 15 170 0.77 # 25317 # 25976 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_4 - 281 SbcCD_C PF13558.1 90 4.2e-05 14.8 0.4 1 1 8.5e-06 0.00027 12.2 0.4 61 88 95 122 74 124 0.78 # 1913 # 2755 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_26 - 311 DAO PF01266.19 358 1.4e-31 100.9 1.0 1 1 3e-31 9.5e-30 94.9 1.0 4 356 6 301 3 304 0.84 # 22757 # 23689 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.629 1_23 - 322 ThiF PF00899.16 136 7e-41 130.6 0.0 1 1 3.9e-42 1.3e-40 129.7 0.0 2 132 23 153 22 155 0.98 # 20820 # 21785 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.641 1_28 - 220 Methyltransf_31 PF13847.1 152 5.8e-12 36.7 0.0 1 1 3.2e-13 1e-11 36.0 0.0 5 106 51 152 47 158 0.88 # 25317 # 25976 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_6 - 209 ArgK PF03308.11 267 2.3e-06 17.8 0.4 1 1 1.6e-07 5.1e-06 16.7 0.2 34 70 9 45 3 48 0.90 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_28 - 220 Methyltransf_23 PF13489.1 161 4.2e-11 34.1 0.0 1 1 1.7e-12 5.5e-11 33.7 0.0 16 149 44 193 29 200 0.82 # 25317 # 25976 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.392 1_23 - 322 Ldh_1_N PF00056.18 141 0.00031 11.9 0.1 1 1 2.2e-05 0.00072 10.7 0.0 2 35 25 56 24 108 0.85 # 20820 # 21785 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.641 1_6 - 209 AAA_24 PF13479.1 213 2.9e-06 18.2 1.6 1 1 2.1e-07 6.6e-06 17.1 1.6 3 83 4 92 2 100 0.80 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 AAA_25 PF13481.1 194 4.8e-06 17.4 0.5 1 1 2.1e-06 6.8e-05 13.6 0.5 35 86 6 46 1 98 0.69 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_6 - 209 APS_kinase PF01583.15 157 0.00013 12.9 0.1 1 1 8.3e-06 0.00027 11.9 0.1 4 39 6 41 3 48 0.92 # 5227 # 5853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0d669f58-351e-49d0-9190-995e1b789eee # Target file: checkm_output/bins/pm1561/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1561/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0d669f58-351e-49d0-9190-995e1b789eee checkm_output/bins/pm1561/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:09 2020 # [ok]