# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_7 - 372 ATP_bind_3 PF01171.15 182 0.0003 14.2 0.0 1 2 5.2e-05 0.01 9.2 0.0 1 59 52 110 52 129 0.78 # 3721 # 4836 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 4_7 - 372 ATP_bind_3 PF01171.15 182 0.0003 14.2 0.0 2 2 0.005 1 2.7 0.0 134 161 232 260 207 262 0.72 # 3721 # 4836 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_26 - 347 Seryl_tRNA_N PF02403.17 108 0.052 7.5 46.3 1 5 0.019 3.8 1.5 8.8 39 98 89 152 77 158 0.72 # 19651 # 20691 # 1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_26 - 347 Seryl_tRNA_N PF02403.17 108 0.052 7.5 46.3 2 5 0.00084 0.17 5.9 3.1 50 100 146 196 143 199 0.89 # 19651 # 20691 # 1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_26 - 347 Seryl_tRNA_N PF02403.17 108 0.052 7.5 46.3 3 5 2.6e-06 0.00052 13.9 12.2 19 100 216 294 201 297 0.85 # 19651 # 20691 # 1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_26 - 347 Seryl_tRNA_N PF02403.17 108 0.052 7.5 46.3 4 5 0.00031 0.061 7.3 2.1 62 105 284 327 282 330 0.90 # 19651 # 20691 # 1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_26 - 347 Seryl_tRNA_N PF02403.17 108 0.052 7.5 46.3 5 5 0.0059 1.2 3.1 1.6 82 105 304 327 296 345 0.51 # 19651 # 20691 # 1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_33 - 262 MipZ PF09140.6 261 3.6e-10 33.2 0.0 1 2 6.6e-10 1.3e-07 24.8 0.0 2 52 4 55 3 81 0.83 # 25118 # 25903 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_33 - 262 MipZ PF09140.6 261 3.6e-10 33.2 0.0 2 2 0.00031 0.063 6.2 0.0 89 122 117 150 89 166 0.74 # 25118 # 25903 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 3_6 - 562 3HCDH_N PF02737.13 180 0.0061 10.1 6.7 1 2 0.0025 0.5 3.9 2.5 1 30 100 129 100 133 0.93 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 3HCDH_N PF02737.13 180 0.0061 10.1 6.7 2 2 0.00014 0.028 7.9 0.1 2 36 273 307 272 359 0.71 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 GIDA PF01134.17 392 4.1e-06 19.7 2.9 1 4 2.1e-08 4.1e-06 19.7 2.9 1 52 100 153 100 166 0.88 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 GIDA PF01134.17 392 4.1e-06 19.7 2.9 2 4 0.074 15 -1.9 0.0 3 32 274 303 272 335 0.85 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 GIDA PF01134.17 392 4.1e-06 19.7 2.9 3 4 0.067 13 -1.7 0.0 128 167 339 363 311 382 0.57 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 GIDA PF01134.17 392 4.1e-06 19.7 2.9 4 4 0.03 6.1 -0.6 0.0 350 385 391 426 382 430 0.76 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 1_15 - 176 SSB PF00436.20 104 2.5e-41 133.7 0.3 1 1 1.5e-43 3.1e-41 133.4 0.3 1 104 5 109 5 109 0.99 # 13478 # 14005 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_28 - 504 UvrD_C_2 PF13538.1 104 1.5e-10 35.0 0.0 1 1 3.5e-12 7e-10 32.9 0.0 46 99 393 463 352 467 0.67 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_6 - 562 Pyr_redox_2 PF07992.9 201 1.6e-41 136.3 0.0 1 1 2.8e-43 5.7e-41 134.5 0.0 1 199 100 407 100 409 0.96 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_14 - 622 DUF87 PF01935.12 229 1.7e-08 28.4 0.0 1 1 4.3e-10 4.3e-08 27.1 0.0 24 63 173 211 168 269 0.87 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_1 - 624 DUF87 PF01935.12 229 4.8e-08 26.9 0.2 1 1 9.2e-10 9.2e-08 26.0 0.2 23 154 259 395 240 468 0.71 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 3_28 - 504 AAA_22 PF13401.1 131 6.5e-05 17.0 0.0 1 2 0.00011 0.0054 10.8 0.0 8 68 23 92 17 122 0.63 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_28 - 504 AAA_22 PF13401.1 131 6.5e-05 17.0 0.0 2 2 0.02 0.99 3.4 0.0 82 124 189 225 164 229 0.77 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_13 - 323 AAA_22 PF13401.1 131 0.00025 15.1 0.0 1 1 1e-05 0.00052 14.1 0.0 5 54 62 103 56 164 0.76 # 11527 # 12495 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_14 - 622 AAA_22 PF13401.1 131 0.00025 15.1 0.0 1 1 1.7e-05 0.00083 13.4 0.0 3 68 171 231 166 287 0.83 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_1 - 624 AAA_22 PF13401.1 131 0.0013 12.8 0.1 1 2 0.001 0.052 7.6 0.0 5 27 260 282 255 318 0.82 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 624 AAA_22 PF13401.1 131 0.0013 12.8 0.1 2 2 0.04 2 2.5 0.1 88 99 456 474 357 528 0.79 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_32 - 542 DNA_methylase PF00145.12 335 1.2e-28 94.0 0.0 1 1 6.3e-30 6.3e-28 91.7 0.0 3 333 126 441 124 443 0.77 # 25396 # 27021 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 2_22 - 476 DNA_methylase PF00145.12 335 1.2e-10 34.9 0.0 1 2 4.1e-11 4.1e-09 29.8 0.0 71 160 228 320 199 324 0.83 # 18306 # 19733 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_22 - 476 DNA_methylase PF00145.12 335 1.2e-10 34.9 0.0 2 2 0.0061 0.61 2.9 0.0 290 330 407 448 341 452 0.73 # 18306 # 19733 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_19 - 93 Ribosomal_L2_C PF03947.13 130 0.001 12.8 0.0 1 1 6.3e-06 0.0013 12.5 0.0 74 111 44 80 24 82 0.86 # 16467 # 16745 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_13 - 323 AAA_3 PF07726.6 131 0.00014 15.4 0.0 1 1 1.1e-06 0.00022 14.7 0.0 3 114 65 188 63 212 0.80 # 11527 # 12495 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_6 - 562 NAD_binding_7 PF13241.1 103 1.7e-05 18.9 2.1 1 2 6.2e-05 0.012 9.7 0.1 9 38 100 129 97 164 0.90 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 NAD_binding_7 PF13241.1 103 1.7e-05 18.9 2.1 2 2 0.00024 0.049 7.8 0.1 8 41 271 307 264 384 0.68 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 1_23 - 295 N6_N4_Mtase PF01555.13 231 8e-09 29.2 0.1 1 2 1.7e-06 0.00034 14.0 0.0 180 223 28 72 4 76 0.84 # 21385 # 22269 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_23 - 295 N6_N4_Mtase PF01555.13 231 8e-09 29.2 0.1 2 2 3.5e-06 0.0007 13.0 0.1 2 172 90 267 89 283 0.72 # 21385 # 22269 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_13 - 323 AAA_17 PF13207.1 121 5.1e-05 18.0 0.0 1 1 5.5e-07 0.00011 16.9 0.0 3 27 65 89 64 166 0.90 # 11527 # 12495 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_14 - 622 MobB PF03205.9 140 0.001 12.6 0.0 1 1 1.7e-05 0.0035 10.9 0.0 4 34 176 206 175 214 0.90 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 2_33 - 262 ArsA_ATPase PF02374.10 305 1.1e-05 18.4 0.0 1 2 3e-07 6.1e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 25118 # 25903 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_33 - 262 ArsA_ATPase PF02374.10 305 1.1e-05 18.4 0.0 2 2 0.029 5.8 -0.3 0.0 124 136 124 136 106 143 0.79 # 25118 # 25903 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 3_28 - 504 PhoH PF02562.11 205 5.1e-06 19.7 0.2 1 2 0.0013 0.26 4.3 0.0 22 45 22 45 4 61 0.78 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_28 - 504 PhoH PF02562.11 205 5.1e-06 19.7 0.2 2 2 7.5e-06 0.0015 11.7 0.0 122 168 196 240 193 255 0.83 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_13 - 323 T2SE PF00437.15 272 7e-05 15.7 0.0 1 1 1.6e-06 0.00016 14.5 0.0 105 148 40 81 9 100 0.77 # 11527 # 12495 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_14 - 622 T2SE PF00437.15 272 0.00037 13.3 0.0 1 1 5.9e-06 0.00059 12.6 0.0 116 162 163 206 124 227 0.78 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 3_6 - 562 NAD_binding_8 PF13450.1 68 0.00014 15.8 1.2 1 2 6.9e-07 0.00014 15.8 1.2 1 35 103 136 103 155 0.91 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 NAD_binding_8 PF13450.1 68 0.00014 15.8 1.2 2 2 0.091 18 -0.6 0.1 1 25 275 299 275 304 0.78 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 F420_oxidored PF03807.12 96 0.027 8.9 6.4 1 3 0.0019 0.38 5.2 1.1 2 33 101 128 100 132 0.87 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 F420_oxidored PF03807.12 96 0.027 8.9 6.4 2 3 0.0046 0.93 3.9 0.2 1 35 272 302 272 338 0.90 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 F420_oxidored PF03807.12 96 0.027 8.9 6.4 3 3 0.082 16 -0.1 0.0 23 52 351 381 341 388 0.78 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 4_7 - 372 TIGR02432 TIGR02432 189 8.1e-05 16.2 0.1 1 2 1.1e-05 0.0022 11.5 0.0 1 58 52 109 52 119 0.85 # 3721 # 4836 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 4_7 - 372 TIGR02432 TIGR02432 189 8.1e-05 16.2 0.1 2 2 0.0084 1.7 2.1 0.0 140 165 235 260 207 262 0.76 # 3721 # 4836 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_13 - 323 Arch_ATPase PF01637.13 234 8.4e-05 16.2 0.0 1 1 7e-07 0.00014 15.5 0.0 4 44 45 85 43 94 0.91 # 11527 # 12495 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_1 - 624 AAA_16 PF13191.1 185 4.1e-05 17.5 0.3 1 1 3.2e-06 0.00021 15.2 0.3 20 63 255 298 247 467 0.62 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_13 - 323 AAA_16 PF13191.1 185 4.8e-05 17.3 0.8 1 1 2.2e-06 0.00015 15.7 0.0 7 48 47 85 42 102 0.79 # 11527 # 12495 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_20 - 206 AAA_16 PF13191.1 185 8.4e-05 16.5 0.1 1 1 1.9e-06 0.00013 15.9 0.1 27 68 11 54 3 168 0.79 # 16978 # 17595 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 3_26 - 347 AAA_13 PF13166.1 712 0.013 7.7 36.6 1 2 0.0019 0.38 2.9 28.3 283 457 85 259 71 272 0.58 # 19651 # 20691 # 1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_26 - 347 AAA_13 PF13166.1 712 0.013 7.7 36.6 2 2 2.3e-05 0.0047 9.2 23.2 287 474 160 339 154 345 0.78 # 19651 # 20691 # 1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_33 - 262 CbiA PF01656.18 195 2.4e-30 99.3 0.0 1 1 3e-32 3e-30 98.9 0.0 1 170 5 205 5 229 0.77 # 25118 # 25903 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_1 - 624 CbiA PF01656.18 195 0.00059 13.1 0.0 1 1 1.1e-05 0.0011 12.3 0.0 3 63 263 351 262 402 0.59 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 3_28 - 504 AAA_14 PF13173.1 128 3.3e-05 17.7 1.3 1 2 2.5e-05 0.0051 10.6 0.1 11 46 28 62 18 156 0.76 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_28 - 504 AAA_14 PF13173.1 128 3.3e-05 17.7 1.3 2 2 0.0011 0.23 5.3 0.0 51 99 176 227 127 241 0.73 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_6 - 562 HI0933_like PF03486.9 409 2e-08 26.9 5.3 1 2 9.7e-07 0.00019 13.8 2.9 2 33 100 131 99 139 0.91 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 HI0933_like PF03486.9 409 2e-08 26.9 5.3 2 2 1.7e-06 0.00034 13.0 0.0 83 164 286 363 281 384 0.86 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 1_13 - 323 AAA_29 PF13555.1 62 0.0024 11.3 1.0 1 1 2.7e-05 0.0054 10.2 0.3 21 38 59 76 54 79 0.86 # 11527 # 12495 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_6 - 562 FAD_binding_2 PF00890.19 417 1e-05 18.4 5.5 1 3 5e-08 1e-05 18.4 5.5 2 32 101 131 100 138 0.91 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 FAD_binding_2 PF00890.19 417 1e-05 18.4 5.5 2 3 0.026 5.3 -0.4 0.6 146 204 315 366 300 385 0.69 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 FAD_binding_2 PF00890.19 417 1e-05 18.4 5.5 3 3 0.011 2.3 0.8 0.1 374 402 375 405 371 418 0.87 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 1_13 - 323 AAA PF00004.24 132 0.00068 13.7 0.1 1 1 7.4e-06 0.0015 12.6 0.1 2 33 65 96 64 149 0.83 # 11527 # 12495 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_28 - 504 UvrD_C PF13361.1 351 1.8e-10 34.6 0.0 1 1 1.7e-12 3.4e-10 33.7 0.0 238 347 359 468 334 472 0.76 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 4_7 - 372 PAPS_reduct PF01507.14 174 7e-12 39.4 0.4 1 2 0.028 2.8 1.6 0.0 2 17 53 68 52 91 0.76 # 3721 # 4836 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 4_7 - 372 PAPS_reduct PF01507.14 174 7e-12 39.4 0.4 2 2 8.8e-13 8.8e-11 35.8 0.1 58 172 154 279 145 281 0.85 # 3721 # 4836 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_36 - 818 PAPS_reduct PF01507.14 174 5e-05 17.0 0.0 1 1 2.1e-06 0.00021 15.0 0.0 3 151 69 256 67 261 0.69 # 28848 # 31301 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 3_6 - 562 Pyr_redox_3 PF13738.1 203 1.3e-18 61.7 0.1 1 3 3.1e-06 0.00061 13.7 0.1 167 199 98 130 70 144 0.84 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 Pyr_redox_3 PF13738.1 203 1.3e-18 61.7 0.1 2 3 6.4e-09 1.3e-06 22.5 0.0 115 201 219 304 172 306 0.78 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 Pyr_redox_3 PF13738.1 203 1.3e-18 61.7 0.1 3 3 1e-08 2.1e-06 21.8 0.0 88 155 316 378 308 431 0.85 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_30 - 212 N6_Mtase PF02384.11 311 7.4e-07 22.3 0.0 1 1 5.9e-09 1.2e-06 21.7 0.0 3 97 71 166 69 201 0.72 # 22924 # 23559 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 2_14 - 622 TraG-D_C PF12696.2 128 5.7e-15 49.2 0.0 1 1 1e-16 1e-14 48.4 0.0 1 124 471 595 471 599 0.83 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_1 - 624 TraG-D_C PF12696.2 128 1.3e-06 22.2 0.0 1 1 2.8e-08 2.8e-06 21.1 0.0 17 75 482 536 464 542 0.84 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 2_33 - 262 AAA_31 PF13614.1 157 2.6e-10 34.3 0.0 1 1 2.6e-12 5.3e-10 33.3 0.0 1 149 3 157 3 165 0.79 # 25118 # 25903 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_15 - 176 AAA_33 PF13671.1 143 0.0011 12.7 0.0 1 1 8.6e-06 0.0017 12.1 0.0 26 102 33 104 23 109 0.75 # 13478 # 14005 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_28 - 504 AAA_30 PF13604.1 196 9.8e-08 25.7 0.1 1 2 9.2e-07 0.00018 15.0 0.0 19 80 20 81 11 109 0.77 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_28 - 504 AAA_30 PF13604.1 196 9.8e-08 25.7 0.1 2 2 0.00017 0.035 7.5 0.0 115 133 211 229 174 278 0.75 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_14 - 622 FtsK_SpoIIIE PF01580.13 205 1.7e-07 24.8 0.0 1 2 3.8e-08 2.6e-06 20.9 0.0 36 81 168 211 136 234 0.79 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 2_14 - 622 FtsK_SpoIIIE PF01580.13 205 1.7e-07 24.8 0.0 2 2 0.042 2.8 1.2 0.0 176 204 481 509 472 510 0.86 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_1 - 624 FtsK_SpoIIIE PF01580.13 205 1e-06 22.2 0.1 1 1 4e-08 2.7e-06 20.9 0.1 33 85 254 304 208 506 0.65 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 2_20 - 206 FtsK_SpoIIIE PF01580.13 205 0.0015 11.9 0.2 1 1 7.1e-05 0.0047 10.3 0.0 34 53 4 23 1 28 0.83 # 16978 # 17595 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 1_13 - 323 ABC_tran PF00005.22 137 0.0014 12.8 0.0 1 1 1.3e-05 0.0027 11.9 0.0 11 46 61 96 55 117 0.85 # 11527 # 12495 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_6 - 562 K_oxygenase PF13434.1 341 7.4e-06 18.9 0.4 1 3 0.0064 1.3 1.7 0.3 189 223 97 129 86 132 0.76 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 K_oxygenase PF13434.1 341 7.4e-06 18.9 0.4 2 3 1.9e-06 0.00038 13.3 0.0 130 233 217 311 200 342 0.78 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 K_oxygenase PF13434.1 341 7.4e-06 18.9 0.4 3 3 0.019 3.8 0.1 0.0 129 160 333 366 313 378 0.68 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_28 - 504 AAA_19 PF13245.1 76 3.1e-09 30.4 0.0 1 1 8.4e-11 8.4e-09 29.0 0.0 8 75 18 77 12 78 0.88 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_13 - 323 AAA_19 PF13245.1 76 0.00031 14.4 0.1 1 1 7e-06 0.0007 13.3 0.1 10 35 61 86 51 112 0.76 # 11527 # 12495 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_1 - 624 AAA_10 PF12846.2 304 3.2e-59 194.7 0.2 1 1 5.2e-61 5.2e-59 194.0 0.2 1 297 259 538 259 546 0.93 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 2_14 - 622 AAA_10 PF12846.2 304 2.1e-18 60.6 0.2 1 1 5.7e-20 5.7e-18 59.2 0.2 2 299 173 549 172 553 0.71 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 3_6 - 562 FAD_oxidored PF12831.2 428 4.7e-06 19.7 4.0 1 2 2.3e-08 4.7e-06 19.7 4.0 2 41 101 139 100 159 0.83 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 FAD_oxidored PF12831.2 428 4.7e-06 19.7 4.0 2 2 0.021 4.1 0.2 0.0 85 119 306 339 260 364 0.71 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 DAO PF01266.19 358 1.8e-10 34.0 10.4 1 2 4.6e-08 9.3e-06 18.6 1.4 2 35 101 134 100 161 0.85 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 DAO PF01266.19 358 1.8e-10 34.0 10.4 2 2 1.1e-08 2.3e-06 20.6 0.9 151 205 314 367 302 479 0.80 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_28 - 504 ResIII PF04851.10 184 2.1e-06 21.5 0.0 1 1 5.5e-08 5.5e-06 20.2 0.0 23 75 17 69 7 107 0.78 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_14 - 622 ResIII PF04851.10 184 0.00021 15.0 0.0 1 1 4.2e-06 0.00042 14.0 0.0 23 57 170 206 129 214 0.74 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_1 - 624 Zot PF05707.7 193 0.0014 12.0 0.0 1 1 2.4e-05 0.0048 10.2 0.0 79 132 461 510 425 529 0.80 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 3_26 - 347 DUF3584 PF12128.3 1201 0.033 5.3 51.1 1 2 0.0051 1 0.4 32.3 377 534 86 242 42 246 0.65 # 19651 # 20691 # 1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_26 - 347 DUF3584 PF12128.3 1201 0.033 5.3 51.1 2 2 2e-05 0.004 8.3 20.6 613 709 225 327 220 345 0.80 # 19651 # 20691 # 1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_28 - 504 Viral_helicase1 PF01443.13 234 1.8e-10 34.6 0.0 1 3 1.4e-05 0.0029 11.0 0.0 2 49 23 73 22 87 0.67 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_28 - 504 Viral_helicase1 PF01443.13 234 1.8e-10 34.6 0.0 2 3 1.8e-05 0.0037 10.7 0.0 56 105 188 234 146 256 0.78 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_28 - 504 Viral_helicase1 PF01443.13 234 1.8e-10 34.6 0.0 3 3 5.2e-05 0.01 9.2 0.0 176 227 404 462 344 467 0.75 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_14 - 622 DEAD PF00270.24 169 4.6e-05 16.8 0.0 1 1 8.7e-07 8.7e-05 15.9 0.0 13 52 171 208 159 231 0.85 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_1 - 624 DEAD PF00270.24 169 0.0014 12.0 0.4 1 1 7e-05 0.007 9.7 0.2 13 133 258 434 245 501 0.66 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 3_6 - 562 Pyr_redox PF00070.22 80 3.3e-19 63.0 4.9 1 2 2.2e-06 0.00044 14.6 1.2 2 31 101 130 100 132 0.95 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 Pyr_redox PF00070.22 80 3.3e-19 63.0 4.9 2 2 3.3e-17 6.6e-15 49.2 0.1 1 70 272 340 272 351 0.90 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 2_14 - 622 DUF853 PF05872.7 504 1.7e-06 20.5 0.0 1 1 1.4e-08 2.7e-06 19.8 0.0 7 60 158 211 153 225 0.93 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 2_14 - 622 TrwB_AAD_bind PF10412.4 386 3.9e-19 62.3 0.0 1 2 8.9e-13 8.9e-11 34.8 0.0 10 54 167 211 161 314 0.70 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 2_14 - 622 TrwB_AAD_bind PF10412.4 386 3.9e-19 62.3 0.0 2 2 6.9e-10 6.9e-08 25.3 0.0 242 377 469 609 445 616 0.82 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_1 - 624 TrwB_AAD_bind PF10412.4 386 2.2e-08 26.9 0.0 1 2 1e-05 0.001 11.6 0.0 6 72 250 325 246 329 0.85 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 624 TrwB_AAD_bind PF10412.4 386 2.2e-08 26.9 0.0 2 2 3.8e-06 0.00038 13.0 0.1 231 302 450 521 420 539 0.66 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 3_28 - 504 AAA_11 PF13086.1 236 5.8e-07 23.2 0.1 1 1 1.9e-08 3.8e-06 20.5 0.1 23 228 25 228 8 229 0.66 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_1 - 624 Guanylate_kin PF00625.16 183 0.00012 15.4 0.1 1 3 0.0027 0.54 3.5 0.0 3 26 260 283 258 313 0.85 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 624 Guanylate_kin PF00625.16 183 0.00012 15.4 0.1 2 3 0.007 1.4 2.2 0.1 75 115 404 445 389 510 0.84 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 624 Guanylate_kin PF00625.16 183 0.00012 15.4 0.1 3 3 0.0007 0.14 5.4 0.0 75 131 522 578 502 585 0.87 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 2_14 - 622 T4SS-DNA_transf PF02534.9 469 4.9e-05 15.9 0.0 1 2 5.2e-07 0.0001 14.8 0.0 37 115 168 249 125 365 0.73 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 2_14 - 622 T4SS-DNA_transf PF02534.9 469 4.9e-05 15.9 0.0 2 2 0.097 19 -2.6 0.0 328 389 494 555 474 572 0.74 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 2_14 - 622 ArgK PF03308.11 267 0.00022 13.9 0.0 1 1 1.8e-06 0.00037 13.2 0.0 12 68 158 209 153 214 0.88 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 4_7 - 372 tRNA_Me_trans PF03054.11 356 7.6e-05 15.2 0.0 1 2 1.1e-06 0.00023 13.6 0.0 2 71 52 122 51 144 0.74 # 3721 # 4836 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 4_7 - 372 tRNA_Me_trans PF03054.11 356 7.6e-05 15.2 0.0 2 2 0.042 8.3 -1.4 0.0 193 224 274 305 236 311 0.83 # 3721 # 4836 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_6 - 562 AlaDh_PNT_C PF01262.16 168 1.5e-06 21.8 4.6 1 2 1.5e-06 0.0003 14.2 1.3 3 50 81 128 79 131 0.91 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_6 - 562 AlaDh_PNT_C PF01262.16 168 1.5e-06 21.8 4.6 2 2 9.9e-05 0.02 8.3 0.1 19 63 269 313 260 359 0.86 # 2623 # 4308 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.645 3_28 - 504 UvrD-helicase PF00580.16 315 1.1e-16 54.9 3.9 1 2 2.9e-06 0.00058 13.1 0.1 2 38 8 44 7 64 0.81 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_28 - 504 UvrD-helicase PF00580.16 315 1.1e-16 54.9 3.9 2 2 3.4e-15 6.8e-13 42.4 0.3 236 305 161 239 46 246 0.72 # 20978 # 22489 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_1 - 624 AAA_25 PF13481.1 194 0.00049 13.4 0.0 1 1 1.8e-05 0.0012 12.1 0.0 36 86 262 302 255 342 0.82 # 2 # 1873 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 2_33 - 262 AAA_25 PF13481.1 194 0.00078 12.7 0.0 1 1 1.8e-05 0.0012 12.1 0.0 42 91 12 51 11 134 0.78 # 25118 # 25903 # -1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_14 - 622 AAA_25 PF13481.1 194 0.00078 12.7 0.0 1 1 3.7e-05 0.0024 11.1 0.0 20 137 159 265 145 272 0.78 # 7847 # 9712 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_13 - 323 AAA_5 PF07728.9 139 2e-18 60.4 0.0 1 1 1.6e-20 3.2e-18 59.7 0.0 2 125 64 188 63 197 0.94 # 11527 # 12495 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/33ec5a2d-0455-4cde-bb53-316662fb6f25 # Target file: checkm_output/bins/pm156/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm156/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/33ec5a2d-0455-4cde-bb53-316662fb6f25 checkm_output/bins/pm156/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:08 2020 # [ok]