# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_30 - 158 Methyltransf_11 PF08241.7 95 2.7e-08 26.4 0.0 1 2 1.7e-05 0.00096 11.8 0.0 1 66 7 68 7 72 0.75 # 19248 # 19721 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_30 - 158 Methyltransf_11 PF08241.7 95 2.7e-08 26.4 0.0 2 2 8.7e-06 0.00051 12.7 0.0 74 95 96 117 88 117 0.89 # 19248 # 19721 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_30 - 158 Methyltransf_25 PF13649.1 101 2.3e-17 55.4 0.0 1 1 5.2e-19 3e-17 55.0 0.0 1 101 6 113 6 113 0.93 # 19248 # 19721 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_30 - 158 Methyltransf_26 PF13659.1 117 1.5e-09 30.1 0.3 1 1 1.6e-10 9.1e-09 27.6 0.3 24 116 23 120 3 121 0.64 # 19248 # 19721 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_36 - 268 THF_DHG_CYH_C PF02882.14 161 4.8e-05 14.6 0.4 1 1 1.9e-06 0.00011 13.4 0.3 95 130 171 206 159 242 0.83 # 21762 # 22565 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_44 - 1040 TOBE PF03459.12 64 0.00022 13.5 0.0 1 2 8e-05 0.0046 9.3 0.0 14 49 81 116 78 119 0.91 # 30329 # 33448 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_44 - 1040 TOBE PF03459.12 64 0.00022 13.5 0.0 2 2 0.065 3.8 -0.1 0.0 3 20 402 419 400 422 0.83 # 30329 # 33448 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_4 - 698 Terminase_GpA PF05876.7 557 6.3e-187 614.3 0.0 1 1 1.3e-188 7.6e-187 614.1 0.0 1 557 32 642 32 642 0.96 # 1862 # 3955 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.543 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/eb4d65cf-1987-47ea-bb06-d85154000ee7 # Target file: checkm_output/bins/pm1557/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1557/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/eb4d65cf-1987-47ea-bb06-d85154000ee7 checkm_output/bins/pm1557/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:05 2020 # [ok]