# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 237 Methyltransf_12 PF08242.7 99 1.9e-14 45.5 0.2 1 2 3.6e-15 1.3e-13 42.8 0.0 1 99 54 152 54 152 0.94 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_11 - 237 Methyltransf_12 PF08242.7 99 1.9e-14 45.5 0.2 2 2 0.05 1.8 0.6 0.0 46 71 178 203 155 214 0.77 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_23 - 291 Seryl_tRNA_N PF02403.17 108 0.014 7.0 12.0 1 3 0.0015 0.056 5.0 0.4 40 106 19 86 6 88 0.58 # 20264 # 21136 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_23 - 291 Seryl_tRNA_N PF02403.17 108 0.014 7.0 12.0 2 3 0.026 0.97 1.0 0.0 44 90 170 220 162 235 0.49 # 20264 # 21136 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_23 - 291 Seryl_tRNA_N PF02403.17 108 0.014 7.0 12.0 3 3 0.00019 0.0069 8.0 1.8 21 93 203 279 186 285 0.80 # 20264 # 21136 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_16 - 322 Saccharop_dh PF03435.13 386 2.1e-06 18.3 0.1 1 2 4.1e-07 1.5e-05 15.5 0.1 1 116 26 182 26 199 0.71 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_16 - 322 Saccharop_dh PF03435.13 386 2.1e-06 18.3 0.1 2 2 0.036 1.3 -0.7 0.0 269 306 260 297 237 305 0.75 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 2_3 - 173 MipZ PF09140.6 261 2.4e-05 15.0 0.0 1 1 8.1e-07 3e-05 14.6 0.0 90 141 33 84 9 122 0.81 # 1435 # 1953 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_11 - 237 Methyltransf_18 PF12847.2 112 5.2e-10 31.5 0.0 1 1 3.1e-11 1.2e-09 30.3 0.0 4 107 52 152 50 156 0.83 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_11 - 237 Methyltransf_11 PF08241.7 95 8.9e-13 40.2 0.0 1 1 4.9e-14 1.8e-12 39.2 0.0 1 93 54 152 54 153 0.92 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_6 - 281 AAA_21 PF13304.1 303 1.8e-06 19.5 0.0 1 1 6.4e-08 2.4e-06 19.2 0.0 233 297 76 138 18 144 0.78 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_16 - 322 Semialdhyde_dh PF01118.19 121 0.00035 12.4 0.3 1 2 4.7e-05 0.0017 10.2 0.0 1 100 25 124 25 142 0.84 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_16 - 322 Semialdhyde_dh PF01118.19 121 0.00035 12.4 0.3 2 2 0.099 3.7 -0.6 0.2 3 12 145 154 143 156 0.87 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_16 - 322 Shikimate_DH PF01488.15 135 5e-05 14.9 0.2 1 1 2.5e-06 9.3e-05 14.1 0.2 8 36 19 47 12 53 0.87 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_6 - 281 SMC_N PF02463.14 220 7.1e-08 23.4 0.1 1 1 2.6e-09 9.6e-08 23.0 0.1 80 211 24 152 5 160 0.72 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 2_3 - 173 VirC1 PF07015.6 231 3.3e-06 17.8 0.1 1 1 1.1e-07 4e-06 17.5 0.1 80 182 38 138 10 163 0.77 # 1435 # 1953 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_3 - 173 CbiA PF01656.18 195 1.4e-14 45.4 0.3 1 1 6.2e-16 2.3e-14 44.7 0.3 33 172 2 119 1 139 0.69 # 1435 # 1953 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_11 - 237 Methyltransf_25 PF13649.1 101 1.4e-07 23.4 0.0 1 1 6.2e-09 2.3e-07 22.7 0.0 2 82 54 129 53 150 0.76 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_14 - 66 ThiS PF02597.15 77 1.8e-12 39.1 0.0 1 1 5.6e-14 2.1e-12 38.9 0.0 18 77 11 65 3 65 0.89 # 14952 # 15149 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_11 - 237 Methyltransf_26 PF13659.1 117 4.8e-08 24.6 0.0 1 1 2e-09 7.4e-08 24.0 0.0 5 76 54 121 51 215 0.89 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_16 - 322 2-Hacid_dh_C PF02826.14 178 0.00022 11.9 0.0 1 1 1.3e-05 0.00049 10.8 0.0 28 73 15 61 1 77 0.74 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_11 - 237 MTS PF05175.9 170 8.2e-13 39.6 0.3 1 1 4.1e-14 1.5e-12 38.7 0.1 21 136 39 152 36 159 0.89 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_6 - 281 ABC_tran PF00005.22 137 5.5e-22 70.1 0.1 1 2 1.7e-21 6.3e-20 63.4 0.1 44 137 3 108 1 108 0.87 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_6 - 281 ABC_tran PF00005.22 137 5.5e-22 70.1 0.1 2 2 0.002 0.073 4.9 0.0 36 93 158 268 145 279 0.68 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_11 - 237 Methyltransf_9 PF08003.6 315 0.00026 11.2 0.0 1 1 8.4e-06 0.00031 10.9 0.0 95 133 30 67 11 164 0.74 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_6 - 281 AAA_10 PF12846.2 304 3.7e-06 18.0 0.0 1 1 1.3e-07 5e-06 17.6 0.0 214 263 75 140 5 146 0.72 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_11 - 237 NodS PF05401.6 201 2.8e-06 18.3 0.0 1 1 1e-07 3.7e-06 17.9 0.0 16 146 20 160 15 170 0.76 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_6 - 281 SbcCD_C PF13558.1 90 4.9e-05 14.8 0.4 1 1 8.5e-06 0.00031 12.2 0.4 61 88 95 122 74 124 0.78 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_13 - 311 DAO PF01266.19 358 4.7e-31 99.4 1.2 1 1 8.5e-31 3.1e-29 93.4 1.2 4 356 6 301 3 304 0.84 # 14023 # 14955 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.628 1_16 - 322 ThiF PF00899.16 136 7.7e-41 130.6 0.0 1 1 3.9e-42 1.5e-40 129.7 0.0 2 132 23 153 22 155 0.98 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_11 - 237 Methyltransf_31 PF13847.1 152 3.8e-11 34.3 0.0 1 1 1.4e-12 5.3e-11 33.8 0.0 5 106 51 152 47 190 0.90 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_11 - 237 Methyltransf_23 PF13489.1 161 2e-10 32.1 0.1 1 1 7.1e-12 2.6e-10 31.7 0.1 16 149 44 193 29 202 0.81 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_16 - 322 Ldh_1_N PF00056.18 141 0.0004 11.7 0.1 1 1 2.2e-05 0.00083 10.7 0.0 2 35 25 56 24 108 0.85 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/23015e8c-fa62-41d3-9510-1734af467fc2 # Target file: checkm_output/bins/pm1556/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1556/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/23015e8c-fa62-41d3-9510-1734af467fc2 checkm_output/bins/pm1556/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:04 2020 # [ok]