# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_12 - 144 Mg_chelatase PF01078.16 207 0.00022 13.1 0.0 1 1 3.9e-06 0.00032 12.5 0.0 24 42 99 117 84 127 0.90 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 IstB_IS21 PF01695.12 178 2.2e-34 111.0 0.2 1 2 0.014 1.1 1.2 0.2 83 111 4 32 2 33 0.89 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 IstB_IS21 PF01695.12 178 2.2e-34 111.0 0.2 2 2 2.9e-35 2.4e-33 107.6 0.0 1 84 51 134 51 141 0.96 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_23 - 389 MipZ PF09140.6 261 1.6e-06 20.0 0.1 1 2 8.4e-08 6.9e-06 17.9 0.0 3 47 109 153 107 168 0.90 # 16603 # 17769 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_23 - 389 MipZ PF09140.6 261 1.6e-06 20.0 0.1 2 2 0.043 3.6 -0.8 0.0 88 128 224 264 211 274 0.76 # 16603 # 17769 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_2 - 153 UvrD_C_2 PF13538.1 104 2.7e-05 16.9 0.0 1 1 4.8e-07 4e-05 16.4 0.0 2 80 58 140 57 152 0.71 # 496 # 954 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_23 - 440 DUF87 PF01935.12 229 4.9e-05 15.8 0.2 1 1 1.3e-06 0.00011 14.7 0.2 24 47 163 186 162 193 0.91 # 18608 # 19927 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_12 - 144 AAA_22 PF13401.1 131 0.00028 13.7 0.0 1 1 7.7e-06 0.00063 12.5 0.0 6 24 99 117 94 138 0.83 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_17 PF13207.1 121 1.1e-05 18.9 0.0 1 2 0.025 2 1.9 0.0 20 53 8 46 4 91 0.62 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_17 PF13207.1 121 1.1e-05 18.9 0.0 2 2 1.8e-06 0.00015 15.3 0.0 2 20 100 118 99 136 0.80 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_23 - 389 ArsA_ATPase PF02374.10 305 1.4e-06 20.1 0.0 1 2 2.3e-06 9.4e-05 14.1 0.0 9 40 115 147 109 154 0.90 # 16603 # 17769 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_23 - 389 ArsA_ATPase PF02374.10 305 1.4e-06 20.1 0.0 2 2 0.0044 0.18 3.4 0.0 125 136 233 244 223 252 0.89 # 16603 # 17769 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_12 - 144 ArsA_ATPase PF02374.10 305 6.3e-05 14.7 0.0 1 1 2.4e-06 9.6e-05 14.1 0.0 5 34 101 130 97 133 0.87 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 PhoH PF02562.11 205 1.7e-06 20.0 0.0 1 1 3.1e-08 2.5e-06 19.4 0.0 16 47 94 125 80 141 0.85 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_23 - 389 VirC1 PF07015.6 231 8.1e-06 17.6 0.1 1 2 2.5e-05 0.002 9.8 0.0 4 42 109 147 107 153 0.91 # 16603 # 17769 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_23 - 389 VirC1 PF07015.6 231 8.1e-06 17.6 0.1 2 2 0.00054 0.044 5.4 0.0 100 139 251 290 218 321 0.72 # 16603 # 17769 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_23 - 440 Arch_ATPase PF01637.13 234 0.00069 11.9 0.0 1 1 1.4e-05 0.0011 11.3 0.0 30 131 172 265 150 273 0.79 # 18608 # 19927 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_12 - 144 AAA_16 PF13191.1 185 3.7e-07 22.9 0.1 1 2 0.0026 0.22 4.1 0.0 122 173 20 88 2 96 0.61 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_16 PF13191.1 185 3.7e-07 22.9 0.1 2 2 2.3e-07 1.9e-05 17.3 0.0 23 61 96 134 87 139 0.81 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_18 PF13238.1 129 0.00012 15.0 0.1 1 1 3.6e-06 0.0003 13.8 0.0 1 19 100 118 100 139 0.79 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_23 - 389 CbiA PF01656.18 195 5.3e-33 106.7 0.0 1 1 1.8e-34 7.3e-33 106.2 0.0 1 188 109 333 109 340 0.76 # 16603 # 17769 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_12 - 144 CbiA PF01656.18 195 2.8e-05 16.2 0.0 1 1 1.3e-06 5.5e-05 15.2 0.0 9 31 107 129 100 132 0.94 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA PF00004.24 132 6.1e-06 19.1 0.1 1 2 0.069 5.7 -0.2 0.0 23 53 31 61 4 67 0.66 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA PF00004.24 132 6.1e-06 19.1 0.1 2 2 3.3e-07 2.7e-05 17.0 0.1 1 21 100 120 100 138 0.82 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 Bac_DnaA PF00308.13 219 0.00067 11.9 0.0 1 1 1.4e-05 0.0011 11.2 0.0 34 68 97 129 71 136 0.77 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_23 - 389 AAA_31 PF13614.1 157 2.6e-06 20.1 0.1 1 2 1.6e-05 0.00065 12.3 0.0 2 49 108 155 107 178 0.86 # 16603 # 17769 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_23 - 389 AAA_31 PF13614.1 157 2.6e-06 20.1 0.1 2 2 0.002 0.08 5.5 0.1 116 151 229 267 217 271 0.79 # 16603 # 17769 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_12 - 144 AAA_31 PF13614.1 157 0.0002 14.0 0.0 1 1 1.5e-05 0.00062 12.3 0.0 10 36 106 132 85 136 0.93 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_33 PF13671.1 143 0.00021 13.8 0.3 1 2 0.07 5.8 -0.6 0.0 44 44 39 39 4 77 0.46 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_33 PF13671.1 143 0.00021 13.8 0.3 2 2 8.7e-06 0.00071 12.1 0.1 2 19 100 117 100 129 0.85 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_23 - 440 AAA_30 PF13604.1 196 0.00039 12.7 0.7 1 3 0.063 5.1 -0.8 0.0 47 72 61 86 53 96 0.91 # 18608 # 19927 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_23 - 440 AAA_30 PF13604.1 196 0.00039 12.7 0.7 2 3 0.00015 0.012 7.8 0.1 16 63 160 204 155 214 0.70 # 18608 # 19927 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_23 - 440 AAA_30 PF13604.1 196 0.00039 12.7 0.7 3 3 0.014 1.1 1.4 0.0 16 70 225 275 213 277 0.76 # 18608 # 19927 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_23 - 440 ABC_tran PF00005.22 137 0.00027 13.9 0.1 1 1 8.6e-06 0.00071 12.5 0.1 6 35 157 186 155 209 0.91 # 18608 # 19927 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_23 - 440 ATP-synt_ab PF00006.20 215 1.9e-77 252.1 0.0 1 1 3.1e-79 2.6e-77 251.7 0.0 2 215 149 358 148 358 0.99 # 18608 # 19927 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_12 - 144 RuvB_N PF05496.7 234 6.1e-05 14.7 0.0 1 1 9.6e-07 7.9e-05 14.4 0.0 48 70 95 117 68 137 0.85 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_19 PF13245.1 76 8.6e-08 24.5 0.2 1 2 0.068 5.6 -0.5 0.0 51 75 47 72 26 73 0.84 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_19 PF13245.1 76 8.6e-08 24.5 0.2 2 2 4.2e-09 3.4e-07 22.6 0.1 13 48 100 131 87 133 0.88 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_10 PF12846.2 304 0.0002 13.4 0.0 1 1 4.2e-06 0.00035 12.7 0.0 3 35 99 131 98 139 0.87 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 ArgK PF03308.11 267 0.00012 13.5 0.0 1 1 2.2e-06 0.00018 12.9 0.0 28 60 96 128 80 133 0.86 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_24 PF13479.1 213 0.00042 12.5 0.0 1 1 7.7e-06 0.00063 12.0 0.0 5 23 99 117 95 129 0.86 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 NACHT PF05729.7 166 0.00017 13.9 0.0 1 1 4.8e-06 0.0004 12.7 0.0 3 27 100 124 98 137 0.84 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_25 PF13481.1 194 2.5e-07 22.9 0.0 1 1 8.4e-09 3.4e-07 22.4 0.0 22 64 81 129 57 138 0.76 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_23 - 440 AAA_25 PF13481.1 194 2.9e-05 16.1 0.2 1 1 1.7e-06 6.9e-05 14.9 0.0 24 157 151 267 135 285 0.69 # 18608 # 19927 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_12 - 144 AAA_28 PF13521.1 163 0.00016 14.3 0.0 1 2 0.049 4 -0.0 0.0 98 125 22 49 6 76 0.55 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_28 PF13521.1 163 0.00016 14.3 0.0 2 2 9.5e-06 0.00078 12.1 0.0 2 25 100 127 99 136 0.76 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_5 PF07728.9 139 3.4e-06 19.5 0.1 1 2 0.045 3.7 -0.1 0.0 91 126 13 49 3 61 0.52 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 144 AAA_5 PF07728.9 139 3.4e-06 19.5 0.1 2 2 2e-07 1.7e-05 17.2 0.0 1 37 99 138 99 140 0.81 # 10002 # 10433 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fec42740-f450-4cff-8e73-ca515551df60 # Target file: checkm_output/bins/pm1553/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1553/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fec42740-f450-4cff-8e73-ca515551df60 checkm_output/bins/pm1553/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:58:03 2020 # [ok]