# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_55 - 460 Methyltransf_12 PF08242.7 99 4e-05 16.6 0.0 1 1 1.7e-06 0.00012 15.0 0.0 54 98 282 334 260 335 0.70 # 28802 # 30181 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_17 - 215 MipZ PF09140.6 261 2.4e-08 25.8 0.2 1 1 1.3e-09 9.5e-08 23.9 0.2 3 63 5 65 3 131 0.72 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_55 - 460 Methyltransf_18 PF12847.2 112 3.7e-05 16.8 0.1 1 1 4.7e-06 0.00035 13.7 0.1 5 109 242 337 238 339 0.79 # 28802 # 30181 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_35 - 169 Methyltransf_11 PF08241.7 95 3.8e-06 19.9 0.1 1 2 0.00052 0.039 7.0 0.0 21 66 31 75 14 77 0.61 # 18735 # 19241 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_35 - 169 Methyltransf_11 PF08241.7 95 3.8e-06 19.9 0.1 2 2 3.2e-05 0.0024 10.9 0.0 74 95 103 124 98 124 0.87 # 18735 # 19241 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_17 - 215 ArsA_ATPase PF02374.10 305 4.1e-07 21.7 1.5 1 2 1e-07 7.6e-06 17.6 0.6 3 33 5 35 3 40 0.89 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_17 - 215 ArsA_ATPase PF02374.10 305 4.1e-07 21.7 1.5 2 2 0.0033 0.25 2.7 0.0 118 136 73 91 37 162 0.61 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_17 - 215 CbiA PF01656.18 195 1.8e-15 49.3 0.4 1 1 6.1e-17 4.6e-15 48.0 0.4 1 169 5 156 5 180 0.67 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_35 - 169 Methyltransf_25 PF13649.1 101 2.5e-15 49.2 0.0 1 1 4.3e-17 3.2e-15 48.9 0.0 1 101 13 120 13 120 0.96 # 18735 # 19241 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_16 - 82 Ribosomal_S8 PF00410.14 129 0.00047 12.5 0.6 1 1 8.1e-06 0.00061 12.2 0.1 89 125 6 42 1 45 0.85 # 10280 # 10525 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_17 - 215 AAA_31 PF13614.1 157 0.00021 13.7 0.2 1 2 1.2e-05 0.00089 11.7 0.0 3 38 5 40 4 59 0.86 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_17 - 215 AAA_31 PF13614.1 157 0.00021 13.7 0.2 2 2 0.088 6.6 -0.9 0.0 116 149 79 112 73 119 0.80 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_35 - 169 Methyltransf_26 PF13659.1 117 3.9e-08 25.9 0.0 1 2 0.021 1.6 1.4 0.0 2 11 11 20 10 25 0.86 # 18735 # 19241 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_35 - 169 Methyltransf_26 PF13659.1 117 3.9e-08 25.9 0.0 2 2 5.4e-09 4e-07 22.6 0.0 57 116 58 127 29 128 0.84 # 18735 # 19241 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_55 - 460 Methyltransf_31 PF13847.1 152 8e-06 18.0 0.0 1 2 0.02 1.5 0.9 0.0 3 22 238 257 236 269 0.82 # 28802 # 30181 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_55 - 460 Methyltransf_31 PF13847.1 152 8e-06 18.0 0.0 2 2 1.1e-06 8e-05 14.8 0.0 71 124 295 351 270 400 0.80 # 28802 # 30181 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_55 - 460 Methyltransf_23 PF13489.1 161 2.5e-20 65.3 0.0 1 1 5.5e-22 4.1e-20 64.6 0.0 14 160 230 402 216 403 0.78 # 28802 # 30181 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_54 - 204 PB1 PF00564.19 84 0.00015 14.0 0.0 1 1 3.3e-06 0.00025 13.2 0.0 39 60 153 174 126 181 0.88 # 28194 # 28805 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 1_59 - 617 Terminase_GpA PF05876.7 557 6.4e-179 588.3 0.0 1 1 1e-180 7.8e-179 588.0 0.0 4 552 34 585 31 590 0.96 # 32753 # 34603 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.508 1_17 - 215 AAA_25 PF13481.1 194 5e-05 15.2 0.2 1 1 1.8e-06 0.00013 13.9 0.2 35 156 5 95 2 110 0.77 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9c7da466-abaf-41bf-a18e-ee0ce5a027b4 # Target file: checkm_output/bins/pm1545/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1545/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9c7da466-abaf-41bf-a18e-ee0ce5a027b4 checkm_output/bins/pm1545/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:57 2020 # [ok]