# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 344 Mg_chelatase PF01078.16 207 6.8e-08 23.8 0.0 1 1 2.7e-09 1.4e-07 22.8 0.0 5 65 149 209 145 249 0.83 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 cobW PF02492.14 178 6e-05 14.5 0.0 1 1 2e-06 0.0001 13.8 0.0 3 35 169 201 167 208 0.87 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 IstB_IS21 PF01695.12 178 0.00017 13.0 0.0 1 2 3.2e-05 0.0016 9.8 0.0 38 63 158 182 130 190 0.71 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 IstB_IS21 PF01695.12 178 0.00017 13.0 0.0 2 2 0.021 1.1 0.6 0.0 114 132 202 220 193 223 0.91 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_30 - 251 MipZ PF09140.6 261 1.9e-16 51.8 0.1 1 1 6.4e-18 3.3e-16 51.0 0.1 2 129 3 140 2 161 0.75 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_30 - 251 YhjQ PF06564.7 244 6.1e-07 20.9 0.0 1 2 1.3e-06 6.6e-05 14.3 0.0 1 41 1 41 1 47 0.94 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_30 - 251 YhjQ PF06564.7 244 6.1e-07 20.9 0.0 2 2 0.0012 0.063 4.5 0.0 101 149 95 141 69 229 0.86 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_2 - 344 DUF87 PF01935.12 229 0.00014 13.6 0.0 1 1 9e-06 0.00046 12.0 0.0 26 46 169 189 148 199 0.84 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 AAA_22 PF13401.1 131 1.7e-05 17.0 0.0 1 1 6.4e-07 3.3e-05 16.0 0.0 3 37 165 213 161 309 0.76 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 ATP_bind_1 PF03029.12 238 8.5e-05 14.1 0.0 1 1 6.8e-06 0.00017 13.1 0.0 1 33 171 203 171 210 0.92 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_30 - 251 ATP_bind_1 PF03029.12 238 0.00011 13.7 0.1 1 1 1.3e-05 0.00032 12.2 0.1 6 99 12 118 10 121 0.63 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_2 - 344 AAA_17 PF13207.1 121 8.5e-05 15.4 0.0 1 1 4.3e-06 0.00022 14.0 0.0 2 21 169 188 168 257 0.78 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 MobB PF03205.9 140 0.0002 13.0 0.0 1 1 7.8e-06 0.0004 12.1 0.0 3 27 169 193 167 204 0.85 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_30 - 251 ArsA_ATPase PF02374.10 305 3.9e-11 34.4 0.4 1 1 5.7e-11 2.9e-09 28.3 0.3 2 136 2 119 1 190 0.68 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_2 - 344 T2SE PF00437.15 272 2.4e-73 238.3 0.0 1 1 5.4e-75 2.7e-73 238.1 0.0 4 270 19 321 16 323 0.97 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_30 - 251 Methyltransf_24 PF13578.1 106 0.00015 14.5 0.0 1 1 9.5e-06 0.00048 12.9 0.0 7 81 13 121 11 138 0.63 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_2 - 344 Zeta_toxin PF06414.7 201 0.00011 13.3 0.0 1 1 3.3e-06 0.00017 12.7 0.0 14 52 164 204 151 240 0.71 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_30 - 251 VirC1 PF07015.6 231 1.6e-05 16.0 0.0 1 2 3e-06 0.00015 12.8 0.0 1 41 1 41 1 59 0.89 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_30 - 251 VirC1 PF07015.6 231 1.6e-05 16.0 0.0 2 2 0.017 0.86 0.5 0.0 81 121 107 147 88 167 0.67 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_30 - 251 Fer4_NifH PF00142.13 273 2.2e-07 22.2 0.0 1 1 5.9e-09 3e-07 21.8 0.0 8 49 10 51 2 89 0.80 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_2 - 344 AAA_16 PF13191.1 185 7.8e-06 17.9 0.0 1 1 5e-07 1.3e-05 17.2 0.0 8 80 151 223 150 290 0.78 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_10 - 820 AAA_16 PF13191.1 185 0.00026 13.0 0.0 1 1 2.5e-05 0.00065 11.7 0.0 9 40 450 481 443 497 0.76 # 8022 # 10481 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_2 - 344 AAA_23 PF13476.1 202 0.0019 10.5 7.8 1 2 0.051 1.3 1.2 1.4 131 175 116 160 88 169 0.53 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 AAA_23 PF13476.1 202 0.0019 10.5 7.8 2 2 3.2e-05 0.00082 11.7 3.4 9 39 154 186 147 189 0.72 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_9 - 211 AAA_23 PF13476.1 202 0.0024 10.1 4.3 1 2 0.00035 0.0089 8.3 1.1 170 202 30 62 26 62 0.89 # 7393 # 8025 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_9 - 211 AAA_23 PF13476.1 202 0.0024 10.1 4.3 2 2 0.013 0.33 3.1 0.1 137 177 120 166 83 200 0.64 # 7393 # 8025 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_2 - 344 AAA_18 PF13238.1 129 2.6e-06 19.7 0.0 1 1 1.1e-07 5.5e-06 18.7 0.0 1 42 169 214 169 259 0.90 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_30 - 251 CbiA PF01656.18 195 2.3e-38 123.5 0.0 1 1 5.6e-40 2.9e-38 123.2 0.0 1 184 4 201 4 214 0.78 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_2 - 344 AAA_14 PF13173.1 128 0.00031 12.6 1.5 1 2 0.0023 0.12 4.3 0.6 31 97 114 174 105 174 0.63 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 AAA_14 PF13173.1 128 0.00031 12.6 1.5 2 2 2.9e-05 0.0015 10.4 0.0 2 40 166 205 165 235 0.74 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 AAA_29 PF13555.1 62 3.2e-05 15.4 0.0 1 1 2.5e-06 6.5e-05 14.4 0.0 17 43 161 186 153 195 0.77 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_10 - 820 AAA_29 PF13555.1 62 8.3e-05 14.1 0.1 1 1 6.8e-06 0.00017 13.1 0.1 23 38 466 480 453 496 0.78 # 8022 # 10481 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_2 - 344 Sigma54_activat PF00158.21 168 0.0002 12.8 0.0 1 1 8.9e-06 0.00045 11.7 0.0 8 51 152 195 146 213 0.82 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_1 - 645 TraG-D_C PF12696.2 128 3.3e-29 93.4 0.0 1 1 1.1e-30 5.8e-29 92.5 0.0 2 125 395 511 394 514 0.89 # 3 # 1937 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_30 - 251 AAA_31 PF13614.1 157 8.6e-12 37.2 0.0 1 1 1.3e-12 6.6e-11 34.3 0.0 2 154 3 145 2 147 0.80 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_2 - 344 AAA_33 PF13671.1 143 3.6e-05 15.6 0.0 1 1 1.2e-06 6.1e-05 14.9 0.0 2 27 169 195 169 271 0.71 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 FtsK_SpoIIIE PF01580.13 205 1.4e-06 19.9 0.0 1 1 9.4e-08 2.4e-06 19.1 0.0 27 60 153 188 130 192 0.72 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_10 - 820 FtsK_SpoIIIE PF01580.13 205 1.6e-05 16.4 0.0 1 1 1.2e-06 3.2e-05 15.4 0.0 27 73 452 499 429 499 0.71 # 8022 # 10481 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_2 - 344 ABC_tran PF00005.22 137 2.1e-05 16.8 0.0 1 1 6.9e-07 3.5e-05 16.1 0.0 5 46 160 201 157 281 0.85 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_10 - 820 AAA_10 PF12846.2 304 2.8e-41 133.8 0.0 1 1 8.1e-43 4.1e-41 133.2 0.0 2 303 466 741 465 742 0.90 # 8022 # 10481 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_27 - 332 DUF3584 PF12128.3 1201 5.1e-07 19.3 53.9 1 1 1.2e-08 6e-07 19.0 53.9 284 526 82 324 27 329 0.70 # 21846 # 22841 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_2 - 344 Viral_helicase1 PF01443.13 234 0.00036 12.0 0.0 1 1 1.4e-05 0.00071 11.1 0.0 1 21 169 189 169 215 0.85 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 DEAD PF00270.24 169 8.4e-06 17.3 0.0 1 1 6.3e-07 3.2e-05 15.4 0.0 10 56 161 205 154 256 0.71 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_1 - 645 TrwB_AAD_bind PF10412.4 386 4e-27 86.7 0.0 1 1 5e-28 8.6e-27 85.6 0.0 15 377 138 524 134 530 0.75 # 3 # 1937 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_10 - 820 TrwB_AAD_bind PF10412.4 386 3.4e-08 24.4 0.0 1 2 8.4e-06 0.00014 12.4 0.0 12 52 462 502 451 508 0.85 # 8022 # 10481 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_10 - 820 TrwB_AAD_bind PF10412.4 386 3.4e-08 24.4 0.0 2 2 6.5e-05 0.0011 9.5 0.0 243 340 658 757 645 773 0.83 # 8022 # 10481 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_2 - 344 TrwB_AAD_bind PF10412.4 386 2e-05 15.3 0.0 1 1 2.3e-06 3.8e-05 14.3 0.0 14 39 165 190 161 199 0.88 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 Sigma54_activ_2 PF14532.1 138 9.9e-05 14.4 0.0 1 1 4e-06 0.0002 13.4 0.0 7 47 152 192 150 239 0.76 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_1 - 645 T4SS-DNA_transf PF02534.9 469 5.9e-115 376.3 0.0 1 1 1.5e-116 7.8e-115 375.9 0.0 1 462 99 550 99 554 0.93 # 3 # 1937 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_30 - 251 ArgK PF03308.11 267 0.00016 12.4 0.0 1 1 4.8e-06 0.00025 11.8 0.0 38 71 11 44 2 47 0.90 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_2 - 344 Pox_A32 PF04665.7 241 0.00021 12.6 0.0 1 1 7.6e-06 0.00039 11.7 0.0 15 36 168 189 155 197 0.84 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 UPF0079 PF02367.12 123 0.00012 13.6 0.0 1 1 4.5e-06 0.00023 12.8 0.0 14 41 165 192 151 200 0.76 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 NACHT PF05729.7 166 0.00023 12.8 0.0 1 1 8.8e-06 0.00045 11.9 0.0 3 23 169 189 167 196 0.87 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8bc32488-693b-4409-ac53-d87ed4d0fae4 # Target file: checkm_output/bins/pm1540/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1540/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8bc32488-693b-4409-ac53-d87ed4d0fae4 checkm_output/bins/pm1540/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:55 2020 # [ok]