# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_39 - 234 ThiI PF02568.9 197 9.3e-07 21.0 0.0 1 2 1.7e-06 0.00013 14.0 0.0 4 115 4 125 1 132 0.66 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_39 - 234 ThiI PF02568.9 197 9.3e-07 21.0 0.0 2 2 0.001 0.077 4.9 0.0 137 172 156 191 140 197 0.87 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_39 - 234 ATP_bind_3 PF01171.15 182 1.5e-06 20.4 0.1 1 2 3.1e-07 2.4e-05 16.4 0.1 3 67 7 66 5 81 0.73 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_39 - 234 ATP_bind_3 PF01171.15 182 1.5e-06 20.4 0.1 2 2 0.01 0.8 1.7 0.0 137 168 156 188 136 193 0.81 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_30 - 266 UPF0020 PF01170.13 180 0.00043 12.4 0.0 1 1 9.6e-06 0.00074 11.6 0.0 31 98 176 242 146 251 0.76 # 21069 # 21866 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_44 - 73 cobW PF02492.14 178 6.2e-05 15.0 0.0 1 1 9.1e-07 7e-05 14.9 0.0 4 23 29 48 27 61 0.78 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 Thymidylate_kin PF02223.12 186 0.00087 11.2 0.0 1 1 1.3e-05 0.001 11.0 0.0 5 26 34 55 31 70 0.75 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 IstB_IS21 PF01695.12 178 0.00036 12.5 0.0 1 1 4.7e-06 0.00036 12.5 0.0 49 78 27 60 2 63 0.75 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_20 - 231 MipZ PF09140.6 261 5.3e-09 28.0 0.3 1 2 9.4e-07 7.2e-05 14.4 0.0 2 39 3 39 2 44 0.87 # 13575 # 14267 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_20 - 231 MipZ PF09140.6 261 5.3e-09 28.0 0.3 2 2 8.6e-06 0.00066 11.3 0.2 83 135 62 114 52 121 0.88 # 13575 # 14267 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_66 - 1761 UvrD_C_2 PF13538.1 104 3.7e-08 26.0 0.1 1 1 1.6e-09 1.2e-07 24.4 0.1 4 103 1338 1441 1335 1442 0.63 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_48 - 877 DUF87 PF01935.12 229 1.8e-07 23.7 0.1 1 1 4.5e-08 1.7e-06 20.5 0.0 26 215 483 663 469 676 0.75 # 33865 # 36495 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_44 - 73 DUF87 PF01935.12 229 0.00013 14.3 0.0 1 1 4.3e-06 0.00017 14.0 0.0 28 48 30 50 29 60 0.84 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 NB-ARC PF00931.17 287 0.00011 13.7 0.1 1 1 1.6e-06 0.00012 13.5 0.1 24 43 30 49 20 57 0.84 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 Septin PF00735.13 281 0.0002 12.9 0.0 1 1 2.9e-06 0.00022 12.8 0.0 8 32 29 53 25 69 0.84 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 AAA_22 PF13401.1 131 1.7e-06 20.8 0.0 1 1 5e-08 1.9e-06 20.6 0.0 8 33 29 54 21 70 0.80 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_66 - 1761 AAA_22 PF13401.1 131 6.3e-05 15.7 0.0 1 2 0.0055 0.21 4.3 0.0 88 122 492 540 415 546 0.72 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_66 - 1761 AAA_22 PF13401.1 131 6.3e-05 15.7 0.0 2 2 0.00036 0.014 8.1 0.0 4 37 1002 1043 998 1120 0.74 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_44 - 73 ATP_bind_1 PF03029.12 238 0.00041 12.5 0.1 1 1 6.1e-06 0.00047 12.2 0.1 1 21 30 50 30 58 0.86 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 PRK PF00485.13 194 0.00018 13.7 0.0 1 1 2.7e-06 0.00021 13.4 0.0 4 29 30 55 28 71 0.82 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 AAA_17 PF13207.1 121 6.6e-05 16.3 0.0 1 1 1.1e-06 8.4e-05 16.0 0.0 3 24 29 50 29 65 0.85 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 Miro PF08477.8 119 7.7e-05 15.8 0.0 1 1 1.1e-06 8.7e-05 15.6 0.0 3 23 29 49 27 69 0.80 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_39 - 234 Arginosuc_synth PF00764.14 388 1.8e-05 16.4 0.1 1 1 3.3e-07 2.5e-05 15.9 0.1 1 59 7 65 7 80 0.84 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_44 - 73 MobB PF03205.9 140 3.5e-05 16.1 0.1 1 1 1.7e-06 4.3e-05 15.8 0.1 4 27 29 52 28 61 0.85 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_48 - 877 MobB PF03205.9 140 0.00019 13.7 0.0 1 2 0.014 0.35 3.1 0.0 29 75 103 148 94 195 0.76 # 33865 # 36495 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_48 - 877 MobB PF03205.9 140 0.00019 13.7 0.0 2 2 0.0011 0.029 6.6 0.0 4 28 484 508 482 523 0.82 # 33865 # 36495 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_76 - 370 MobB PF03205.9 140 0.00032 13.0 0.0 1 1 2.5e-05 0.00063 12.0 0.0 4 39 76 110 73 115 0.86 # 65369 # 66478 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 1_39 - 234 NAD_synthase PF02540.12 242 4.6e-07 21.4 0.0 1 2 9.8e-08 7.5e-06 17.5 0.1 19 86 4 70 1 90 0.81 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_39 - 234 NAD_synthase PF02540.12 242 4.6e-07 21.4 0.0 2 2 0.0062 0.47 1.8 0.0 148 171 160 183 154 188 0.87 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_20 - 231 ArsA_ATPase PF02374.10 305 6.9e-08 24.3 0.2 1 1 1.3e-09 1e-07 23.8 0.2 3 44 4 44 2 72 0.88 # 13575 # 14267 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_44 - 73 T2SE PF00437.15 272 1.4e-05 16.6 0.0 1 1 2.1e-07 1.6e-05 16.4 0.0 128 155 25 52 16 63 0.84 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 Zeta_toxin PF06414.7 201 0.00015 13.5 0.0 1 1 2.4e-06 0.00018 13.1 0.0 20 44 29 52 27 60 0.84 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_20 - 231 VirC1 PF07015.6 231 3.8e-19 61.2 0.0 1 1 9.1e-21 7e-19 60.3 0.0 1 187 1 188 1 210 0.85 # 13575 # 14267 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_39 - 234 TIGR02432 TIGR02432 189 5.1e-08 25.3 0.1 1 2 4.3e-08 3.3e-06 19.4 0.1 2 62 6 60 5 80 0.77 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_39 - 234 TIGR02432 TIGR02432 189 5.1e-08 25.3 0.1 2 2 0.0027 0.21 3.7 0.0 140 172 155 188 137 190 0.80 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_76 - 370 Arch_ATPase PF01637.13 234 0.00076 11.7 0.0 1 1 3.3e-05 0.0013 11.0 0.0 22 59 74 111 71 216 0.73 # 65369 # 66478 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 1_44 - 73 Arch_ATPase PF01637.13 234 0.0009 11.5 0.0 1 1 2.8e-05 0.0011 11.2 0.0 24 44 29 49 25 61 0.88 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_39 - 234 QueC PF06508.8 210 2e-85 277.9 0.1 1 1 3e-87 2.3e-85 277.6 0.1 2 209 6 216 5 217 0.98 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_44 - 73 AAA_16 PF13191.1 185 3e-05 16.6 0.1 1 1 2.4e-06 6.1e-05 15.6 0.1 20 52 21 56 6 69 0.81 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_65 - 733 AAA_16 PF13191.1 185 9.6e-05 14.9 0.0 1 1 7.9e-06 0.0002 13.9 0.0 20 62 181 232 174 267 0.73 # 49505 # 51703 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_76 - 370 AAA_16 PF13191.1 185 0.00029 13.4 0.0 1 1 2.1e-05 0.00054 12.5 0.0 25 158 73 207 60 221 0.56 # 65369 # 66478 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 1_44 - 73 AAA_23 PF13476.1 202 4.2e-05 16.5 0.0 1 1 6e-07 4.6e-05 16.3 0.0 23 39 29 45 10 47 0.91 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_20 - 231 CbiA PF01656.18 195 6.6e-17 54.1 0.4 1 1 4.6e-18 1.8e-16 52.7 0.4 1 142 4 125 4 145 0.82 # 13575 # 14267 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_76 - 370 CbiA PF01656.18 195 0.00045 12.2 0.0 1 1 2e-05 0.00077 11.4 0.0 10 46 83 118 77 203 0.64 # 65369 # 66478 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 1_76 - 370 KaiC PF06745.8 227 2.8e-11 35.4 0.4 1 1 1.4e-11 1.1e-09 30.3 0.4 1 80 54 130 54 243 0.65 # 65369 # 66478 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 1_44 - 73 AAA_29 PF13555.1 62 9.8e-05 14.4 0.0 1 1 3.6e-06 0.00014 13.9 0.0 25 43 27 45 16 47 0.82 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_66 - 1761 AAA_29 PF13555.1 62 0.00067 11.8 0.4 1 2 0.0049 0.19 3.9 0.1 8 41 706 738 705 758 0.81 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_66 - 1761 AAA_29 PF13555.1 62 0.00067 11.8 0.4 2 2 0.0024 0.092 4.9 0.0 24 43 1003 1022 991 1027 0.83 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_76 - 370 AAA PF00004.24 132 9.5e-05 15.2 0.0 1 1 2.5e-06 0.00019 14.2 0.0 3 105 77 202 76 212 0.61 # 65369 # 66478 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 1_76 - 370 TK PF00265.13 176 0.00016 13.8 0.0 1 1 3.1e-06 0.00024 13.2 0.0 2 84 73 158 72 168 0.69 # 65369 # 66478 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 1_39 - 234 PAPS_reduct PF01507.14 174 4.6e-05 15.8 0.0 1 1 1.9e-06 0.00015 14.2 0.0 2 54 6 58 5 78 0.90 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_76 - 370 CobU PF02283.11 167 0.00023 13.1 0.0 1 1 5.9e-06 0.00046 12.2 0.0 3 125 77 209 75 218 0.77 # 65369 # 66478 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 1_44 - 73 MMR_HSR1 PF01926.18 116 0.00044 12.8 0.0 1 1 6.7e-06 0.00052 12.5 0.0 3 22 29 48 27 64 0.79 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_30 - 266 N6_Mtase PF02384.11 311 4e-10 31.7 0.0 1 1 8.1e-12 6.2e-10 31.1 0.0 23 119 142 246 126 259 0.85 # 21069 # 21866 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_44 - 73 DUF258 PF03193.11 161 0.00012 13.9 0.0 1 1 1.8e-06 0.00014 13.6 0.0 38 61 28 51 21 61 0.83 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_65 - 733 TraG-D_C PF12696.2 128 7e-16 50.8 0.0 1 1 4.4e-17 1.7e-15 49.6 0.0 1 127 419 541 419 542 0.84 # 49505 # 51703 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_48 - 877 TraG-D_C PF12696.2 128 0.00072 12.0 0.1 1 1 3.7e-05 0.0014 11.0 0.1 13 77 709 773 694 799 0.82 # 33865 # 36495 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_39 - 234 Asn_synthase PF00733.16 255 6.4e-08 24.9 0.0 1 1 1.1e-09 8.4e-08 24.5 0.0 18 80 4 66 1 100 0.81 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_20 - 231 AAA_31 PF13614.1 157 4.4e-11 35.5 0.0 1 2 8.8e-12 6.8e-10 31.6 0.0 2 43 3 43 2 74 0.91 # 13575 # 14267 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_20 - 231 AAA_31 PF13614.1 157 4.4e-11 35.5 0.0 2 2 0.012 0.89 2.0 0.0 117 152 77 111 52 116 0.76 # 13575 # 14267 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_44 - 73 NTPase_1 PF03266.10 168 0.00014 14.1 0.0 1 1 2.1e-06 0.00017 13.9 0.0 3 28 29 54 27 63 0.83 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 AAA_33 PF13671.1 143 0.00041 12.8 0.0 1 1 6.2e-06 0.00048 12.6 0.0 3 23 29 49 28 65 0.85 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_30 - 266 Methyltransf_26 PF13659.1 117 9e-06 18.3 0.1 1 1 4.5e-07 3.5e-05 16.4 0.0 6 62 179 242 176 258 0.82 # 21069 # 21866 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_66 - 1761 AAA_30 PF13604.1 196 2e-42 137.5 13.4 1 2 0.00042 0.016 7.3 4.5 8 127 426 540 423 561 0.86 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_66 - 1761 AAA_30 PF13604.1 196 2e-42 137.5 13.4 2 2 2.9e-43 1.1e-41 135.0 0.3 2 185 986 1172 985 1177 0.93 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_44 - 73 AAA_30 PF13604.1 196 4.2e-06 19.0 0.1 1 1 1.1e-07 4.3e-06 18.9 0.1 21 55 28 63 21 72 0.82 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 FtsK_SpoIIIE PF01580.13 205 1.9e-05 16.7 0.0 1 1 5.1e-07 2e-05 16.7 0.0 39 60 24 47 4 55 0.78 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_48 - 877 FtsK_SpoIIIE PF01580.13 205 6.1e-05 15.1 0.1 1 2 1.1e-05 0.00042 12.3 0.0 34 64 474 506 450 510 0.84 # 33865 # 36495 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_48 - 877 FtsK_SpoIIIE PF01580.13 205 6.1e-05 15.1 0.1 2 2 0.067 2.6 -0.0 0.0 76 146 532 612 530 721 0.75 # 33865 # 36495 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_76 - 370 RecA PF00154.16 323 1.3e-158 519.7 0.7 1 1 2e-160 1.5e-158 519.5 0.7 1 320 22 339 22 342 0.99 # 65369 # 66478 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 1_44 - 73 ABC_tran PF00005.22 137 5.8e-06 19.2 0.0 1 1 1.5e-07 5.9e-06 19.2 0.0 15 38 29 52 23 72 0.78 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_66 - 1761 ABC_tran PF00005.22 137 0.001 11.9 1.6 1 2 0.014 0.54 3.1 0.1 6 27 715 736 711 756 0.91 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_66 - 1761 ABC_tran PF00005.22 137 0.001 11.9 1.6 2 2 0.003 0.11 5.3 0.0 12 32 1003 1023 993 1034 0.83 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_44 - 73 TIGR03263 TIGR03263 180 0.0001 14.2 0.0 1 1 1.6e-06 0.00012 14.0 0.0 5 43 29 69 27 72 0.82 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 ATP-synt_ab PF00006.20 215 0.00034 12.7 0.1 1 1 4.6e-06 0.00036 12.6 0.1 18 44 28 54 15 62 0.84 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_66 - 1761 AAA_19 PF13245.1 76 2.9e-07 22.8 0.2 1 1 4.4e-08 1.7e-06 20.3 0.2 10 76 1002 1064 994 1064 0.76 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_44 - 73 AAA_19 PF13245.1 76 0.00014 14.2 0.1 1 1 4e-06 0.00015 14.0 0.1 7 47 23 62 20 72 0.70 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_48 - 877 AAA_10 PF12846.2 304 4.1e-52 170.0 0.2 1 1 2.6e-53 6.8e-52 169.2 0.2 1 293 480 768 480 774 0.90 # 33865 # 36495 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_65 - 733 AAA_10 PF12846.2 304 1.6e-08 26.8 0.0 1 1 1.1e-08 2.9e-07 22.7 0.0 3 291 187 488 186 498 0.70 # 49505 # 51703 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_44 - 73 AAA_10 PF12846.2 304 6e-06 18.4 0.0 1 1 2.6e-07 6.6e-06 18.2 0.0 3 28 27 52 26 67 0.86 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 Viral_helicase1 PF01443.13 234 0.00073 11.6 0.0 1 1 1.1e-05 0.00081 11.4 0.0 2 21 29 48 28 68 0.82 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 PduV-EutP PF10662.4 143 5.9e-05 15.1 0.0 1 1 8.9e-07 6.9e-05 14.9 0.0 6 25 30 49 26 63 0.79 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_66 - 1761 DEAD PF00270.24 169 8.5e-05 14.6 0.0 1 1 5.1e-06 0.0002 13.4 0.0 1 55 987 1045 987 1090 0.84 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_44 - 73 DEAD PF00270.24 169 0.00041 12.4 0.1 1 1 1.3e-05 0.00049 12.1 0.1 15 53 26 63 16 65 0.75 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_39 - 234 ATP_bind_4 PF01902.12 219 0.00027 12.9 0.0 1 1 4.9e-06 0.00038 12.4 0.0 3 57 6 55 3 76 0.72 # 27910 # 28611 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.392 1_44 - 73 DUF853 PF05872.7 504 0.00056 10.8 0.2 1 1 8.5e-06 0.00066 10.6 0.2 20 50 26 54 19 59 0.87 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_65 - 733 TrwB_AAD_bind PF10412.4 386 1e-141 464.5 0.0 1 1 5.1e-143 1.3e-141 464.1 0.0 2 385 172 560 171 561 0.99 # 49505 # 51703 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_48 - 877 TrwB_AAD_bind PF10412.4 386 2.4e-06 18.9 0.1 1 2 5.3e-07 1.4e-05 16.4 0.0 15 53 480 518 470 572 0.82 # 33865 # 36495 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_48 - 877 TrwB_AAD_bind PF10412.4 386 2.4e-06 18.9 0.1 2 2 0.07 1.8 -0.5 0.0 240 318 687 771 666 775 0.72 # 33865 # 36495 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_44 - 73 TrwB_AAD_bind PF10412.4 386 0.0001 13.5 0.0 1 1 4.1e-06 0.00011 13.4 0.0 11 40 21 50 10 58 0.83 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_66 - 1761 AAA_11 PF13086.1 236 1.8e-05 16.9 0.0 1 2 4.3e-05 0.0033 9.5 0.0 2 70 986 1051 985 1071 0.81 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_66 - 1761 AAA_11 PF13086.1 236 1.8e-05 16.9 0.0 2 2 0.0015 0.11 4.5 0.0 196 232 1084 1123 1078 1124 0.78 # 51703 # 56985 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_65 - 733 T4SS-DNA_transf PF02534.9 469 1.7e-08 25.9 0.0 1 2 0.018 0.7 0.8 0.0 127 179 259 309 249 337 0.80 # 49505 # 51703 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_65 - 733 T4SS-DNA_transf PF02534.9 469 1.7e-08 25.9 0.0 2 2 5.3e-09 2e-07 22.4 0.0 272 371 390 486 326 511 0.76 # 49505 # 51703 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_48 - 877 T4SS-DNA_transf PF02534.9 469 7e-06 17.3 0.9 1 1 3.7e-07 1.4e-05 16.3 0.5 164 385 545 777 462 796 0.74 # 33865 # 36495 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_65 - 733 PIF1 PF05970.9 364 0.00019 12.9 0.0 1 1 3.5e-06 0.00027 12.4 0.0 18 55 181 218 168 223 0.88 # 49505 # 51703 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_44 - 73 GTP_EFTU PF00009.22 188 0.00018 13.5 0.0 1 1 2.4e-06 0.00018 13.5 0.0 3 30 25 52 23 69 0.83 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 Gtr1_RagA PF04670.7 232 0.00041 12.0 0.0 1 1 6.2e-06 0.00048 11.8 0.0 4 29 30 55 28 66 0.86 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 RNA_helicase PF00910.17 107 9.4e-05 15.1 0.0 1 1 1.8e-06 0.00014 14.6 0.0 2 25 29 52 28 70 0.78 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 UPF0079 PF02367.12 123 0.00017 13.8 0.1 1 1 2.9e-06 0.00023 13.4 0.1 20 42 30 52 19 63 0.81 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_44 - 73 NACHT PF05729.7 166 4.3e-06 19.0 0.0 1 1 7.1e-08 5.5e-06 18.7 0.0 4 31 29 56 28 61 0.86 # 32369 # 32587 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.543 1_76 - 370 AAA_25 PF13481.1 194 1.7e-09 29.9 0.5 1 1 1.4e-10 5.5e-09 28.2 0.5 12 173 51 189 41 209 0.70 # 65369 # 66478 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 1_20 - 231 AAA_25 PF13481.1 194 0.00023 13.1 0.1 1 1 1.7e-05 0.00065 11.7 0.1 41 65 10 34 3 52 0.81 # 13575 # 14267 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_76 - 370 Rad51 PF08423.6 256 4.5e-13 41.2 0.4 1 1 4.2e-14 3.2e-12 38.4 0.4 16 222 50 240 44 252 0.78 # 65369 # 66478 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ab08116b-ebea-4d0a-a535-2d6601ac10d6 # Target file: checkm_output/bins/pm1531/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1531/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ab08116b-ebea-4d0a-a535-2d6601ac10d6 checkm_output/bins/pm1531/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:50 2020 # [ok]