# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_18 - 188 Methyltransf_12 PF08242.7 99 2.2e-05 18.8 0.0 1 1 2e-07 3.8e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 13000 # 13563 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_16 - 226 UPF0020 PF01170.13 180 3.4e-06 20.5 0.0 1 2 0.00044 0.017 8.5 0.0 102 122 16 36 3 88 0.72 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_16 - 226 UPF0020 PF01170.13 180 3.4e-06 20.5 0.0 2 2 0.00015 0.0056 10.1 0.0 27 54 162 188 158 216 0.72 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 2_10 - 234 UPF0020 PF01170.13 180 7e-06 19.5 0.0 1 2 0.00027 0.01 9.2 0.0 103 120 17 34 5 75 0.83 # 4599 # 5300 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_10 - 234 UPF0020 PF01170.13 180 7e-06 19.5 0.0 2 2 0.00047 0.018 8.4 0.0 28 51 170 193 165 227 0.75 # 4599 # 5300 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 4_6 - 228 UPF0020 PF01170.13 180 1.4e-05 18.6 0.0 1 2 0.00081 0.031 7.6 0.0 104 119 18 33 7 88 0.73 # 4249 # 4932 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 228 UPF0020 PF01170.13 180 1.4e-05 18.6 0.0 2 2 0.00031 0.012 9.0 0.0 28 54 163 189 158 221 0.67 # 4249 # 4932 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 13_2 - 188 UPF0020 PF01170.13 180 7e-05 16.3 0.0 1 1 9e-06 0.00035 14.0 0.0 19 43 41 65 39 138 0.91 # 181 # 744 # -1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 4_18 - 188 UPF0020 PF01170.13 180 0.002 11.5 0.0 1 1 0.00019 0.0074 9.7 0.0 19 43 41 65 35 130 0.78 # 13000 # 13563 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_18 - 188 RrnaAD PF00398.15 262 4.1e-08 26.4 0.0 1 1 5.3e-10 5.2e-08 26.0 0.0 9 113 29 128 24 148 0.87 # 13000 # 13563 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 13_2 - 188 RrnaAD PF00398.15 262 1.9e-05 17.6 0.0 1 1 2.6e-07 2.5e-05 17.2 0.0 10 113 30 128 26 140 0.87 # 181 # 744 # -1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 2_18 - 402 MipZ PF09140.6 261 3.6e-06 20.0 0.0 1 2 0.0053 0.52 3.1 0.0 3 50 111 163 109 193 0.73 # 12576 # 13781 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_18 - 402 MipZ PF09140.6 261 3.6e-06 20.0 0.0 2 2 1.7e-06 0.00017 14.6 0.0 87 136 233 282 220 296 0.87 # 12576 # 13781 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_11 - 402 MipZ PF09140.6 261 1e-05 18.5 0.5 1 2 6.2e-05 0.0059 9.5 0.1 1 50 110 164 110 191 0.74 # 6589 # 7794 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_11 - 402 MipZ PF09140.6 261 1e-05 18.5 0.5 2 2 0.00042 0.041 6.7 0.0 90 135 237 282 227 287 0.89 # 6589 # 7794 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 3_4 - 301 3HCDH_N PF02737.13 180 4.8e-07 23.4 0.7 1 1 2.1e-08 2.1e-06 21.3 0.7 1 40 6 45 6 116 0.91 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 8_6 - 565 3HCDH_N PF02737.13 180 0.0061 10.0 6.4 1 2 0.0095 0.91 2.9 2.4 1 30 99 128 99 134 0.93 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 3HCDH_N PF02737.13 180 0.0061 10.0 6.4 2 2 0.00018 0.017 8.6 0.1 2 39 272 309 271 348 0.73 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 GIDA PF01134.17 392 5e-08 26.0 6.6 1 3 6.9e-10 6.7e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 GIDA PF01134.17 392 5e-08 26.0 6.6 2 3 0.076 7.3 -0.9 0.0 3 31 273 301 271 315 0.84 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 GIDA PF01134.17 392 5e-08 26.0 6.6 3 3 0.037 3.5 0.1 0.1 349 385 393 429 387 433 0.77 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_4 - 301 GIDA PF01134.17 392 0.0097 8.6 3.4 1 1 0.00014 0.013 8.1 3.4 2 72 7 78 6 90 0.89 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 5_17 - 181 SSB PF00436.20 104 8.7e-42 135.1 0.4 1 1 1.1e-43 1.1e-41 134.8 0.4 1 99 6 105 6 113 0.97 # 9076 # 9618 # -1 # ID=5_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.621 9_8 - 176 SSB PF00436.20 104 4.6e-41 132.8 0.4 1 1 6.7e-43 6.5e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 4473 # 5000 # -1 # ID=9_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 4_18 - 188 Methyltransf_18 PF12847.2 112 5.7e-10 33.6 0.0 1 1 1.3e-11 1.2e-09 32.6 0.0 4 109 53 146 50 148 0.89 # 13000 # 13563 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 13_2 - 188 Methyltransf_18 PF12847.2 112 1.4e-07 26.0 0.0 1 1 2.3e-09 2.3e-07 25.3 0.0 2 107 51 144 50 146 0.90 # 181 # 744 # -1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_16 - 327 UvrD_C_2 PF13538.1 104 0.00062 13.8 0.0 1 1 2.2e-05 0.0043 11.1 0.0 70 103 137 171 83 171 0.86 # 13660 # 14640 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 8_6 - 565 Pyr_redox_2 PF07992.9 201 1.5e-43 142.8 0.0 1 1 3.2e-45 6.3e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_16 - 226 Methyltransf_11 PF08241.7 95 0.0011 13.3 0.0 1 3 0.045 8.7 0.8 0.0 46 65 4 25 2 28 0.77 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_16 - 226 Methyltransf_11 PF08241.7 95 0.0011 13.3 0.0 2 3 0.0023 0.44 5.0 0.0 78 93 53 68 46 70 0.85 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_16 - 226 Methyltransf_11 PF08241.7 95 0.0011 13.3 0.0 3 3 0.0066 1.3 3.5 0.0 5 41 172 207 168 223 0.74 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 8_6 - 565 DFP PF04127.10 185 0.0015 12.0 2.4 1 2 0.00039 0.076 6.4 0.4 28 51 105 128 99 156 0.83 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 DFP PF04127.10 185 0.0015 12.0 2.4 2 2 0.0014 0.27 4.7 0.1 32 53 281 302 276 336 0.77 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 NAD_binding_7 PF13241.1 103 6.6e-07 23.4 1.2 1 2 5.4e-05 0.01 9.9 0.2 9 38 99 128 96 184 0.89 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 NAD_binding_7 PF13241.1 103 6.6e-07 23.4 1.2 2 2 1.4e-05 0.0027 11.8 0.1 8 41 270 306 264 380 0.74 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_16 - 226 N6_N4_Mtase PF01555.13 231 5.6e-37 121.2 0.0 1 1 9.4e-37 6e-35 114.6 0.0 1 228 21 200 21 203 0.91 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 4_6 - 228 N6_N4_Mtase PF01555.13 231 1.3e-36 120.1 0.0 1 2 3.9e-15 2.5e-13 43.8 0.0 1 114 21 124 21 133 0.89 # 4249 # 4932 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 228 N6_N4_Mtase PF01555.13 231 1.3e-36 120.1 0.0 2 2 1.6e-24 1e-22 74.5 0.0 169 228 141 200 126 203 0.90 # 4249 # 4932 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_10 - 234 N6_N4_Mtase PF01555.13 231 1.1e-32 107.2 0.0 1 2 9.8e-13 6.3e-11 36.0 0.0 1 113 21 130 21 137 0.85 # 4599 # 5300 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_10 - 234 N6_N4_Mtase PF01555.13 231 1.1e-32 107.2 0.0 2 2 6e-23 3.9e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 4599 # 5300 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 7_6 - 122 CTP_transf_2 PF01467.21 157 0.00044 14.2 0.0 1 1 2.5e-06 0.00048 14.0 0.0 31 112 6 87 1 100 0.74 # 1969 # 2334 # -1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_22 - 87 TIGR03723 TIGR03723 314 0.002 10.7 0.0 1 1 1.2e-05 0.0022 10.6 0.0 18 70 15 68 7 80 0.80 # 15294 # 15554 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_11 - 402 ArsA_ATPase PF02374.10 305 0.00062 12.7 0.1 1 1 8.3e-06 0.0016 11.3 0.0 4 136 113 255 110 257 0.68 # 6589 # 7794 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_11 - 402 Methyltransf_24 PF13578.1 106 0.00062 14.5 0.0 1 1 1.9e-05 0.0036 12.0 0.0 4 79 120 255 117 271 0.64 # 6589 # 7794 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 8_6 - 565 NAD_binding_8 PF13450.1 68 6.8e-05 16.7 1.2 1 2 3.5e-07 6.8e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 NAD_binding_8 PF13450.1 68 6.8e-05 16.7 1.2 2 2 0.041 7.9 0.5 0.2 1 25 274 298 274 303 0.81 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_4 - 301 F420_oxidored PF03807.12 96 4.2e-06 21.0 0.6 1 1 1.3e-07 1.3e-05 19.5 0.2 2 78 7 79 6 98 0.82 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 8_6 - 565 F420_oxidored PF03807.12 96 0.014 9.7 4.1 1 2 0.0047 0.45 4.9 1.2 2 31 100 126 99 131 0.87 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 F420_oxidored PF03807.12 96 0.014 9.7 4.1 2 2 0.015 1.4 3.3 0.1 1 34 271 300 271 323 0.87 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_11 - 402 Fer4_NifH PF00142.13 273 6.4e-06 19.3 0.0 1 1 6.9e-08 1.3e-05 18.3 0.0 7 72 117 187 112 195 0.80 # 6589 # 7794 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_11 - 402 CbiA PF01656.18 195 3.7e-23 75.7 0.1 1 2 0.095 9.2 -0.6 0.1 137 173 57 90 53 107 0.67 # 6589 # 7794 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_11 - 402 CbiA PF01656.18 195 3.7e-23 75.7 0.1 2 2 1.9e-24 1.8e-22 73.5 0.0 1 148 112 309 112 351 0.70 # 6589 # 7794 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 2_18 - 402 CbiA PF01656.18 195 2.5e-18 60.0 0.0 1 1 5.6e-20 5.4e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 12576 # 13781 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 4_18 - 188 Methyltransf_25 PF13649.1 101 0.00022 15.4 0.0 1 1 1.7e-06 0.00032 14.9 0.0 1 101 54 142 54 142 0.81 # 13000 # 13563 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 8_6 - 565 HI0933_like PF03486.9 409 4.3e-08 25.8 3.7 1 2 1.2e-06 0.00023 13.5 2.5 2 33 99 130 98 138 0.91 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 HI0933_like PF03486.9 409 4.3e-08 25.8 3.7 2 2 7.2e-06 0.0014 10.9 0.0 82 164 284 366 276 385 0.83 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 FAD_binding_2 PF00890.19 417 8.3e-06 18.6 4.7 1 3 4.3e-08 8.3e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 FAD_binding_2 PF00890.19 417 8.3e-06 18.6 4.7 2 3 0.034 6.6 -0.8 0.1 143 204 311 369 297 388 0.72 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 FAD_binding_2 PF00890.19 417 8.3e-06 18.6 4.7 3 3 0.074 14 -1.9 0.0 376 402 388 408 377 424 0.82 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 Pyr_redox_3 PF13738.1 203 2.5e-17 57.4 0.1 1 2 4.4e-14 8.6e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 Pyr_redox_3 PF13738.1 203 2.5e-17 57.4 0.1 2 2 9e-07 0.00017 15.5 0.0 93 147 320 375 309 430 0.76 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_4 - 301 NAD_binding_11 PF14833.1 122 9.1e-38 122.9 0.3 1 2 0.029 5.6 0.9 1.1 8 53 96 141 92 153 0.85 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 3_4 - 301 NAD_binding_11 PF14833.1 122 9.1e-38 122.9 0.3 2 2 4.7e-40 9.1e-38 122.9 0.3 1 121 170 289 170 290 0.98 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 13_2 - 188 N6_Mtase PF02384.11 311 0.0009 12.2 0.0 1 2 3.8e-05 0.0073 9.2 0.0 28 71 32 75 21 89 0.82 # 181 # 744 # -1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 13_2 - 188 N6_Mtase PF02384.11 311 0.0009 12.2 0.0 2 2 0.028 5.5 -0.3 0.0 123 137 110 124 102 132 0.81 # 181 # 744 # -1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_4 - 301 NAD_binding_2 PF03446.10 163 8.4e-41 133.3 3.7 1 1 6.4e-43 1.2e-40 132.8 3.7 2 162 5 166 4 167 0.96 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_11 - 402 AAA_31 PF13614.1 157 7.2e-08 26.3 0.0 1 3 0.08 7.7 0.2 0.0 44 87 23 65 6 77 0.73 # 6589 # 7794 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_11 - 402 AAA_31 PF13614.1 157 7.2e-08 26.3 0.0 2 3 3.4e-05 0.0033 11.2 0.0 2 90 111 204 110 219 0.81 # 6589 # 7794 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_11 - 402 AAA_31 PF13614.1 157 7.2e-08 26.3 0.0 3 3 5.3e-05 0.0051 10.6 0.0 109 148 237 275 221 280 0.87 # 6589 # 7794 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 2_18 - 402 AAA_31 PF13614.1 157 0.00019 15.3 0.0 1 1 1.1e-05 0.0011 12.8 0.0 108 147 235 273 230 279 0.86 # 12576 # 13781 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 4_18 - 188 Methyltransf_26 PF13659.1 117 5.1e-14 46.2 0.0 1 1 2.7e-15 8.7e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 13000 # 13563 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_16 - 226 Methyltransf_26 PF13659.1 117 6.1e-13 42.7 0.1 1 2 1.1e-07 3.7e-06 20.8 0.0 53 114 3 71 2 74 0.77 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_16 - 226 Methyltransf_26 PF13659.1 117 6.1e-13 42.7 0.1 2 2 2.4e-07 7.8e-06 19.8 0.0 4 44 167 206 164 220 0.83 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 13_2 - 188 Methyltransf_26 PF13659.1 117 1.5e-12 41.5 0.0 1 1 7.5e-14 2.4e-12 40.8 0.0 2 111 52 144 51 148 0.91 # 181 # 744 # -1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 4_6 - 228 Methyltransf_26 PF13659.1 117 2.8e-12 40.6 0.1 1 2 2.1e-07 6.8e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 4249 # 4932 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 228 Methyltransf_26 PF13659.1 117 2.8e-12 40.6 0.1 2 2 5.8e-07 1.9e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 4249 # 4932 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_10 - 234 Methyltransf_26 PF13659.1 117 5.2e-11 36.5 0.2 1 2 1.9e-06 6.2e-05 16.9 0.0 63 113 13 70 3 86 0.73 # 4599 # 5300 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_10 - 234 Methyltransf_26 PF13659.1 117 5.2e-11 36.5 0.2 2 2 1.2e-06 3.8e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 4599 # 5300 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 3_4 - 301 Methyltransf_26 PF13659.1 117 0.0048 10.8 6.3 1 1 0.00027 0.0088 9.9 6.3 13 105 14 155 6 246 0.76 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 3_4 - 301 2-Hacid_dh_C PF02826.14 178 2e-06 20.9 0.1 1 1 1.9e-08 3.7e-06 20.0 0.1 36 146 4 118 2 124 0.86 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 11_2 - 252 FmrO PF07091.6 251 4.1e-82 268.7 0.0 1 1 2.4e-84 4.7e-82 268.5 0.0 1 251 12 246 12 246 0.98 # 525 # 1280 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 13_2 - 188 MTS PF05175.9 170 5.3e-10 32.7 0.0 1 1 7.8e-12 7.5e-10 32.3 0.0 24 142 43 150 38 170 0.82 # 181 # 744 # -1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 4_18 - 188 MTS PF05175.9 170 1.7e-09 31.1 0.0 1 1 2.4e-11 2.3e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 13000 # 13563 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_18 - 188 Methyltrans_SAM PF10672.4 286 0.0018 11.0 0.0 1 1 1.3e-05 0.0025 10.5 0.0 196 261 113 173 100 180 0.78 # 13000 # 13563 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_18 - 188 Met_10 PF02475.11 200 0.00086 12.7 0.0 1 1 5.7e-06 0.0011 12.4 0.0 98 189 47 132 29 145 0.79 # 13000 # 13563 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 8_6 - 565 K_oxygenase PF13434.1 341 1.1e-05 18.3 0.0 1 3 0.0039 0.76 2.4 0.0 187 220 94 125 59 130 0.79 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 K_oxygenase PF13434.1 341 1.1e-05 18.3 0.0 2 3 3.3e-06 0.00065 12.5 0.0 132 231 218 308 202 332 0.82 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 K_oxygenase PF13434.1 341 1.1e-05 18.3 0.0 3 3 0.057 11 -1.4 0.0 132 160 346 369 314 377 0.67 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_10 - 234 Cons_hypoth95 PF03602.10 183 5.8e-06 19.6 0.0 1 2 0.00037 0.024 7.8 0.0 113 170 19 78 12 86 0.73 # 4599 # 5300 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_10 - 234 Cons_hypoth95 PF03602.10 183 5.8e-06 19.6 0.0 2 2 9.4e-05 0.006 9.8 0.0 20 60 149 188 142 225 0.73 # 4599 # 5300 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_16 - 226 Cons_hypoth95 PF03602.10 183 1.7e-05 18.1 0.0 1 2 0.00065 0.042 7.1 0.0 112 156 18 64 2 82 0.65 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_16 - 226 Cons_hypoth95 PF03602.10 183 1.7e-05 18.1 0.0 2 2 0.00015 0.0096 9.1 0.0 41 62 162 183 145 213 0.80 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 4_6 - 228 Cons_hypoth95 PF03602.10 183 2e-05 17.9 0.0 1 2 0.00095 0.061 6.5 0.0 113 146 19 54 5 81 0.66 # 4249 # 4932 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 228 Cons_hypoth95 PF03602.10 183 2e-05 17.9 0.0 2 2 0.00012 0.0077 9.4 0.0 41 62 162 183 145 218 0.78 # 4249 # 4932 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_4 - 301 UDPG_MGDP_dh_N PF03721.9 185 1.4e-05 18.4 0.2 1 2 2e-06 0.00038 13.7 0.1 2 39 6 43 5 50 0.92 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 3_4 - 301 UDPG_MGDP_dh_N PF03721.9 185 1.4e-05 18.4 0.2 2 2 0.0061 1.2 2.3 0.0 107 139 86 117 82 126 0.77 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 8_6 - 565 FAD_oxidored PF12831.2 428 5.6e-06 19.4 3.6 1 1 2.9e-08 5.6e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 DAO PF01266.19 358 8.2e-09 28.6 11.7 1 3 1.4e-08 2.6e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 DAO PF01266.19 358 8.2e-09 28.6 11.7 2 3 0.032 6.1 -0.6 0.1 3 31 273 301 271 307 0.75 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 DAO PF01266.19 358 8.2e-09 28.6 11.7 3 3 9.4e-07 0.00018 14.3 0.5 152 208 314 372 307 433 0.74 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 4_18 - 188 Methyltransf_31 PF13847.1 152 1.2e-06 22.0 0.0 1 1 1.5e-08 1.5e-06 21.7 0.0 5 119 52 162 48 183 0.83 # 13000 # 13563 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 13_2 - 188 Methyltransf_31 PF13847.1 152 0.0015 12.0 0.0 1 1 1.9e-05 0.0019 11.6 0.0 3 118 50 156 48 182 0.83 # 181 # 744 # -1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 8_6 - 565 NAD_binding_9 PF13454.1 156 5.5e-05 16.8 2.8 1 3 0.0081 1.6 2.3 0.1 1 41 101 135 101 162 0.81 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 NAD_binding_9 PF13454.1 156 5.5e-05 16.8 2.8 2 3 0.034 6.5 0.3 0.0 134 155 218 241 202 242 0.72 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 NAD_binding_9 PF13454.1 156 5.5e-05 16.8 2.8 3 3 6.6e-06 0.0013 12.4 0.1 112 155 321 366 311 367 0.85 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 Pyr_redox PF00070.22 80 6.9e-20 65.1 6.0 1 2 1.4e-06 0.00028 15.2 1.5 1 31 99 129 99 131 0.96 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 Pyr_redox PF00070.22 80 6.9e-20 65.1 6.0 2 2 6.2e-18 1.2e-15 51.6 0.2 1 74 271 345 271 354 0.90 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 4_18 - 188 TIGR00755 TIGR00755 256 1.4e-08 27.9 0.0 1 1 1.9e-10 1.8e-08 27.4 0.0 8 105 29 123 25 134 0.90 # 13000 # 13563 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 13_2 - 188 TIGR00755 TIGR00755 256 1e-06 21.7 0.0 1 1 1.5e-08 1.4e-06 21.2 0.0 8 105 29 123 26 128 0.88 # 181 # 744 # -1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_16 - 226 MethyltransfD12 PF02086.10 260 0.00051 13.4 0.0 1 2 0.027 2.6 1.2 0.0 176 188 19 31 12 90 0.83 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_16 - 226 MethyltransfD12 PF02086.10 260 0.00051 13.4 0.0 2 2 5.6e-05 0.0054 10.0 0.0 20 46 163 189 148 197 0.79 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 4_6 - 228 MethyltransfD12 PF02086.10 260 0.0011 12.3 0.0 1 2 0.044 4.2 0.5 0.0 178 188 21 31 14 91 0.83 # 4249 # 4932 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 228 MethyltransfD12 PF02086.10 260 0.0011 12.3 0.0 2 2 8e-05 0.0077 9.5 0.0 20 46 163 189 148 197 0.78 # 4249 # 4932 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_18 - 188 Methyltransf_23 PF13489.1 161 0.00012 15.7 0.0 1 1 1.6e-06 0.00015 15.3 0.0 9 120 38 153 27 174 0.78 # 13000 # 13563 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 11_2 - 252 Methyltransf_23 PF13489.1 161 0.0007 13.2 0.0 1 1 1.1e-05 0.001 12.6 0.0 7 52 89 132 82 198 0.78 # 525 # 1280 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 3_4 - 301 TrkA_N PF02254.13 116 6.5e-05 16.8 0.0 1 1 8e-07 0.00016 15.6 0.0 1 42 7 48 7 79 0.86 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 8_6 - 565 AlaDh_PNT_C PF01262.16 168 4.6e-05 16.9 3.1 1 2 0.001 0.099 6.0 0.8 15 50 92 127 89 130 0.90 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 8_6 - 565 AlaDh_PNT_C PF01262.16 168 4.6e-05 16.9 3.1 2 2 4.2e-05 0.0041 10.5 0.1 16 58 265 307 257 339 0.84 # 1778 # 3472 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_4 - 301 AlaDh_PNT_C PF01262.16 168 0.00025 14.5 1.6 1 2 8.4e-06 0.00081 12.8 0.1 21 66 5 50 2 62 0.90 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 3_4 - 301 AlaDh_PNT_C PF01262.16 168 0.00025 14.5 1.6 2 2 0.056 5.4 0.4 0.2 13 42 84 113 72 117 0.84 # 1709 # 2611 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 4_6 - 228 Methyltransf_15 PF09445.5 164 0.00055 13.3 0.0 1 2 0.037 2.4 1.5 0.0 53 79 4 29 2 33 0.91 # 4249 # 4932 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 228 Methyltransf_15 PF09445.5 164 0.00055 13.3 0.0 2 2 0.00013 0.0082 9.5 0.0 3 31 166 194 164 209 0.86 # 4249 # 4932 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_10 - 234 Methyltransf_15 PF09445.5 164 0.0015 12.0 0.0 1 2 0.069 4.4 0.6 0.0 53 80 4 30 2 38 0.91 # 4599 # 5300 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_10 - 234 Methyltransf_15 PF09445.5 164 0.0015 12.0 0.0 2 2 0.00021 0.013 8.8 0.0 3 30 173 200 171 213 0.90 # 4599 # 5300 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_16 - 226 Methyltransf_15 PF09445.5 164 0.0021 11.5 0.0 1 1 0.00021 0.014 8.8 0.0 3 31 166 194 164 207 0.86 # 11801 # 12478 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fb117660-2ff5-4b82-8ad9-80cf29ac51e6 # Target file: checkm_output/bins/pm1526/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1526/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fb117660-2ff5-4b82-8ad9-80cf29ac51e6 checkm_output/bins/pm1526/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:45 2020 # [ok]