# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 388 Seryl_tRNA_N PF02403.17 108 0.0075 8.4 9.9 1 2 0.00045 0.024 6.7 0.6 66 95 214 243 180 248 0.88 # 11156 # 12319 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_21 - 388 Seryl_tRNA_N PF02403.17 108 0.0075 8.4 9.9 2 2 0.00068 0.037 6.2 1.1 68 98 267 297 256 303 0.76 # 11156 # 12319 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_21 - 388 Ras_bdg_2 PF14847.1 105 0.00013 13.9 0.4 1 2 0.0024 0.13 4.3 0.1 7 69 131 201 127 209 0.75 # 11156 # 12319 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_21 - 388 Ras_bdg_2 PF14847.1 105 0.00013 13.9 0.4 2 2 0.00042 0.023 6.7 0.0 14 38 311 335 300 363 0.82 # 11156 # 12319 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_8 - 208 IstB_IS21 PF01695.12 178 8.6e-05 14.0 0.1 1 1 5.6e-06 0.0003 12.3 0.1 56 83 10 37 4 105 0.88 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 MipZ PF09140.6 261 2e-12 38.7 0.3 1 1 4.1e-12 2.2e-10 32.0 0.3 2 129 2 109 1 154 0.70 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 YhjQ PF06564.7 244 0.00014 13.3 0.3 1 2 3.2e-05 0.0017 9.7 0.1 9 38 8 37 1 41 0.89 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 YhjQ PF06564.7 244 0.00014 13.3 0.3 2 2 0.0083 0.45 1.8 0.0 101 144 62 105 38 111 0.68 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 AAA_17 PF13207.1 121 0.00032 13.6 0.0 1 1 9.4e-06 0.00051 12.9 0.0 9 78 11 91 9 158 0.60 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 MobB PF03205.9 140 1.8e-07 23.0 0.0 1 1 2.5e-08 1.3e-06 20.2 0.0 1 43 1 43 1 140 0.77 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 ArsA_ATPase PF02374.10 305 1.5e-08 26.0 0.0 1 2 1.2e-08 6.4e-07 20.6 0.0 5 53 5 53 1 66 0.86 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 ArsA_ATPase PF02374.10 305 1.5e-08 26.0 0.0 2 2 0.0025 0.14 3.2 0.0 121 136 73 88 68 92 0.85 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 Methyltransf_24 PF13578.1 106 0.0004 13.3 0.0 1 1 1.4e-05 0.00073 12.4 0.0 23 86 28 96 10 110 0.54 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 VirC1 PF07015.6 231 6.5e-07 20.6 0.0 1 1 1.5e-08 8e-07 20.3 0.0 3 116 2 111 1 154 0.80 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_21 - 388 AAA_23 PF13476.1 202 0.00021 13.7 1.1 1 1 9.7e-06 0.00026 13.4 1.1 88 201 151 289 38 295 0.76 # 11156 # 12319 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_1 - 107 AAA_23 PF13476.1 202 0.019 7.3 10.9 1 1 0.00078 0.021 7.1 10.9 152 194 11 53 1 56 0.74 # 2 # 322 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_8 - 208 CbiA PF01656.18 195 1.3e-22 72.1 0.0 1 1 5.1e-24 2.8e-22 71.1 0.0 1 191 3 169 3 173 0.69 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 AAA_31 PF13614.1 157 2.2e-08 26.2 0.0 1 2 2.5e-08 1.3e-06 20.4 0.0 2 44 2 44 1 57 0.89 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 AAA_31 PF13614.1 157 2.2e-08 26.2 0.0 2 2 0.0032 0.17 3.8 0.0 114 150 73 110 59 116 0.80 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 FtsJ PF01728.14 181 0.00019 13.5 0.0 1 1 4.8e-06 0.00026 13.0 0.0 73 132 65 118 20 158 0.75 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_16 - 324 Terminase_3 PF04466.8 387 3.5e-40 130.2 0.0 1 1 1.6e-41 4.2e-40 129.9 0.0 67 386 6 310 2 311 0.87 # 7054 # 8025 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.517 1_15 - 104 Terminase_3 PF04466.8 387 2.5e-11 35.2 0.0 1 1 9.5e-13 2.6e-11 35.2 0.0 2 64 20 87 19 101 0.84 # 6798 # 7109 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_21 - 388 Ribosomal_L29 PF00831.18 58 0.00044 12.0 10.7 1 3 0.039 2.1 0.2 0.0 7 26 193 212 192 217 0.89 # 11156 # 12319 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_21 - 388 Ribosomal_L29 PF00831.18 58 0.00044 12.0 10.7 2 3 0.002 0.11 4.4 1.9 6 30 214 238 209 244 0.76 # 11156 # 12319 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_21 - 388 Ribosomal_L29 PF00831.18 58 0.00044 12.0 10.7 3 3 1.3e-05 0.00073 11.3 0.8 6 37 272 303 270 312 0.86 # 11156 # 12319 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_8 - 208 AAA_24 PF13479.1 213 1.6e-06 19.9 0.0 1 1 4.8e-08 2.6e-06 19.2 0.0 11 79 9 89 2 101 0.79 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 208 AAA_25 PF13481.1 194 8.7e-05 14.0 0.2 1 1 5.6e-06 0.0003 12.2 0.2 42 163 10 99 3 107 0.70 # 2397 # 3020 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/07d27c81-207f-431b-8b2b-171145d54354 # Target file: checkm_output/bins/pm1520/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1520/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/07d27c81-207f-431b-8b2b-171145d54354 checkm_output/bins/pm1520/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:42 2020 # [ok]