# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 214 MipZ PF09140.6 261 1.4e-14 45.3 0.4 1 1 1.2e-14 4.6e-13 40.3 0.4 2 129 2 111 1 135 0.85 # 8006 # 8647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.556 1_13 - 214 YhjQ PF06564.7 244 0.00033 11.6 1.3 1 2 5.6e-05 0.0022 8.9 0.4 4 38 3 37 1 72 0.78 # 8006 # 8647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.556 1_13 - 214 YhjQ PF06564.7 244 0.00033 11.6 1.3 2 2 0.0085 0.33 1.8 0.0 106 145 71 108 51 114 0.76 # 8006 # 8647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.556 1_11 - 174 SSB PF00436.20 104 2.3e-13 41.6 0.0 1 1 8e-15 3.1e-13 41.1 0.0 7 101 17 108 14 111 0.94 # 6991 # 7512 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.571 1_13 - 214 SRP54 PF00448.17 196 0.00055 11.0 0.8 1 1 2.3e-05 0.00089 10.3 0.8 11 97 11 94 2 103 0.75 # 8006 # 8647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.556 1_13 - 214 ArsA_ATPase PF02374.10 305 0.00039 11.1 0.1 1 1 1.4e-05 0.00055 10.5 0.1 8 36 8 36 1 40 0.82 # 8006 # 8647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.556 1_13 - 214 VirC1 PF07015.6 231 4.2e-05 14.2 0.1 1 1 1.8e-06 6.8e-05 13.6 0.1 3 186 2 185 1 207 0.63 # 8006 # 8647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.556 1_13 - 214 CbiA PF01656.18 195 2.7e-23 73.9 0.0 1 1 1.9e-24 3.8e-23 73.5 0.0 1 194 3 182 3 183 0.79 # 8006 # 8647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.556 1_6 - 68 CbiA PF01656.18 195 2.5e-05 15.3 0.5 1 1 1.9e-06 3.7e-05 14.7 0.5 1 20 3 22 3 28 0.94 # 3721 # 3924 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 1_8 - 121 MRP-L47 PF06984.8 87 0.00012 13.6 0.2 1 1 4e-06 0.00015 13.2 0.2 26 84 49 108 20 110 0.86 # 4407 # 4769 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_13 - 214 AAA_31 PF13614.1 157 4.9e-05 14.9 0.1 1 1 3.3e-06 0.00013 13.5 0.0 2 40 2 40 1 51 0.86 # 8006 # 8647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.556 1_13 - 214 AAA_25 PF13481.1 194 2.9e-05 15.1 0.8 1 1 1.2e-06 4.5e-05 14.5 0.8 41 72 9 41 3 142 0.86 # 8006 # 8647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.556 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/180ea28c-406b-4419-88a1-89b834372116 # Target file: checkm_output/bins/pm1515/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1515/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/180ea28c-406b-4419-88a1-89b834372116 checkm_output/bins/pm1515/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:37 2020 # [ok]