# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_17 - 221 MipZ PF09140.6 261 8.7e-13 39.8 0.3 1 2 6.1e-09 3e-07 21.6 0.1 2 40 2 40 1 53 0.91 # 8756 # 9418 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_17 - 221 MipZ PF09140.6 261 8.7e-13 39.8 0.3 2 2 2.2e-07 1.1e-05 16.5 0.0 90 135 70 116 62 138 0.81 # 8756 # 9418 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_33 - 345 AAA_22 PF13401.1 131 0.00036 12.6 0.0 1 1 1.6e-05 0.00078 11.5 0.0 4 46 163 199 160 223 0.83 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_33 - 345 ATP_bind_1 PF03029.12 238 0.0003 12.2 0.0 1 1 1.1e-05 0.00052 11.5 0.0 2 23 169 190 168 197 0.87 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_17 - 221 SRP54 PF00448.17 196 5.8e-08 24.3 0.8 1 1 2.6e-09 1.3e-07 23.2 0.8 10 98 10 93 1 183 0.75 # 8756 # 9418 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_33 - 345 AAA_17 PF13207.1 121 4e-06 19.6 0.0 1 2 1.1e-06 5.6e-05 15.9 0.0 2 32 166 198 165 246 0.82 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_33 - 345 AAA_17 PF13207.1 121 4e-06 19.6 0.0 2 2 0.041 2 1.2 0.0 24 77 266 314 254 342 0.65 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_33 - 345 MobB PF03205.9 140 2.4e-05 16.0 0.0 1 1 8.6e-07 4.2e-05 15.2 0.0 2 37 165 199 164 210 0.89 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_17 - 221 CTP_synth_N PF06418.9 276 0.00036 11.5 0.2 1 2 0.00016 0.0077 7.2 0.1 4 40 2 38 1 45 0.93 # 8756 # 9418 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_17 - 221 CTP_synth_N PF06418.9 276 0.00036 11.5 0.2 2 2 0.0052 0.25 2.2 0.0 35 54 153 172 138 174 0.87 # 8756 # 9418 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_17 - 221 ArsA_ATPase PF02374.10 305 9.6e-09 26.5 0.0 1 1 3.9e-10 1.9e-08 25.5 0.0 3 42 3 42 1 57 0.88 # 8756 # 9418 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_33 - 345 T2SE PF00437.15 272 3.1e-53 172.3 0.0 1 1 8.4e-55 4.1e-53 171.8 0.0 7 265 19 311 14 316 0.91 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_17 - 221 VirC1 PF07015.6 231 1.7e-10 32.2 0.2 1 1 1.1e-11 5.4e-10 30.6 0.2 3 182 2 181 1 213 0.79 # 8756 # 9418 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_17 - 221 Fer4_NifH PF00142.13 273 0.0002 12.4 0.0 1 1 5.5e-06 0.00027 12.0 0.0 5 41 4 42 1 89 0.89 # 8756 # 9418 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_33 - 345 AAA_18 PF13238.1 129 9.3e-05 14.7 0.0 1 1 4.5e-06 0.00022 13.5 0.0 1 27 166 196 166 222 0.73 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_17 - 221 CbiA PF01656.18 195 4.5e-16 50.7 3.0 1 1 4.5e-17 2.2e-15 48.4 3.0 1 180 3 164 3 183 0.73 # 8756 # 9418 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_1 - 175 B5 PF03484.10 70 9.5e-05 14.1 0.0 1 2 0.0016 0.076 4.9 0.0 12 39 7 36 1 51 0.75 # 975 # 1499 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.453 1_1 - 175 B5 PF03484.10 70 9.5e-05 14.1 0.0 2 2 0.00026 0.013 7.3 0.0 20 47 109 135 80 140 0.79 # 975 # 1499 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 345 AAA_29 PF13555.1 62 0.00022 12.7 0.1 1 1 1.2e-05 0.0006 11.3 0.1 19 39 159 179 144 185 0.80 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_33 - 345 DUF258 PF03193.11 161 0.00016 12.8 0.0 1 1 5.6e-06 0.00027 12.0 0.0 31 67 158 195 140 225 0.82 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_32 - 618 TraG-D_C PF12696.2 128 2e-29 93.9 0.0 1 1 1.7e-30 4.2e-29 92.9 0.0 1 127 421 540 421 541 0.88 # 21852 # 23705 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_41 - 925 TraG-D_C PF12696.2 128 0.00038 12.2 0.0 1 1 3.3e-05 0.00081 11.2 0.0 1 74 757 830 757 835 0.80 # 29902 # 32676 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_17 - 221 AAA_31 PF13614.1 157 1.5e-05 16.9 0.1 1 1 5.8e-07 2.8e-05 16.0 0.1 2 38 2 38 1 132 0.91 # 8756 # 9418 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_17 - 221 NTPase_1 PF03266.10 168 0.00076 11.1 1.5 1 2 0.00035 0.017 6.7 0.3 7 33 9 35 2 47 0.84 # 8756 # 9418 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_17 - 221 NTPase_1 PF03266.10 168 0.00076 11.1 1.5 2 2 0.0033 0.16 3.5 0.0 88 148 71 133 53 145 0.81 # 8756 # 9418 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_33 - 345 AAA_33 PF13671.1 143 0.0003 12.6 0.0 1 1 9.8e-06 0.00048 11.9 0.0 2 21 166 185 165 247 0.88 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_41 - 925 FtsK_SpoIIIE PF01580.13 205 0.00015 13.2 0.0 1 2 0.00013 0.0032 8.8 0.0 34 58 535 562 522 570 0.81 # 29902 # 32676 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_41 - 925 FtsK_SpoIIIE PF01580.13 205 0.00015 13.2 0.0 2 2 0.021 0.51 1.6 0.0 154 204 756 800 694 801 0.74 # 29902 # 32676 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_33 - 345 FtsK_SpoIIIE PF01580.13 205 0.00015 13.1 0.0 1 1 1.3e-05 0.00031 12.1 0.0 42 59 167 184 156 194 0.87 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_33 - 345 ABC_tran PF00005.22 137 3.6e-05 16.0 0.0 1 1 1.5e-06 7.3e-05 15.0 0.0 8 33 160 185 156 215 0.84 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_41 - 925 AAA_10 PF12846.2 304 6.3e-36 116.2 0.6 1 2 0.045 2.2 -0.6 0.1 106 168 161 270 145 290 0.57 # 29902 # 32676 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_41 - 925 AAA_10 PF12846.2 304 6.3e-36 116.2 0.6 2 2 4.7e-37 2.3e-35 114.3 0.0 3 297 544 833 543 839 0.86 # 29902 # 32676 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_32 - 618 TrwB_AAD_bind PF10412.4 386 9.2e-23 72.3 0.0 1 1 5.6e-24 1.4e-22 71.7 0.0 163 380 338 554 304 558 0.82 # 21852 # 23705 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_33 - 345 TrwB_AAD_bind PF10412.4 386 0.00064 10.2 0.0 1 1 4e-05 0.00099 9.6 0.0 16 40 164 188 156 210 0.86 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_32 - 618 T4SS-DNA_transf PF02534.9 469 2.3e-138 453.5 0.0 1 1 5.9e-140 2.9e-138 453.1 0.0 2 466 103 582 102 585 0.97 # 21852 # 23705 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_33 - 345 Pox_A32 PF04665.7 241 4.6e-05 14.7 0.0 1 1 1.6e-06 8e-05 13.9 0.0 15 44 165 194 154 215 0.88 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_33 - 345 UPF0079 PF02367.12 123 0.00011 13.8 0.1 1 2 0.045 2.2 -0.1 0.0 33 59 122 150 118 156 0.74 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_33 - 345 UPF0079 PF02367.12 123 0.00011 13.8 0.1 2 2 1.4e-05 0.00068 11.2 0.0 9 45 157 193 150 197 0.83 # 23708 # 24742 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.413 1_8 - 115 Ribosomal_L21p PF00829.16 96 0.00011 14.2 0.6 1 2 0.0054 0.26 3.4 0.1 17 44 24 52 17 69 0.82 # 3769 # 4113 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_8 - 115 Ribosomal_L21p PF00829.16 96 0.00011 14.2 0.6 2 2 6.6e-05 0.0032 9.5 0.0 16 45 73 102 67 114 0.85 # 3769 # 4113 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ec1ceb7e-f792-4971-9683-980a0fa1cbac # Target file: checkm_output/bins/pm1511/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1511/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ec1ceb7e-f792-4971-9683-980a0fa1cbac checkm_output/bins/pm1511/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:35 2020 # [ok]