# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_5 - 298 Mg_chelatase PF01078.16 207 0.00022 14.2 0.0 1 2 7.8e-05 0.015 8.3 0.0 25 45 43 63 39 83 0.75 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 4_5 - 298 Mg_chelatase PF01078.16 207 0.00022 14.2 0.0 2 2 0.002 0.38 3.6 0.0 99 120 98 119 93 188 0.86 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 4_3 - 400 ATP_bind_3 PF01171.15 182 1.4e-07 25.0 0.0 1 2 2.8e-05 0.0027 11.0 0.0 1 34 146 180 146 226 0.70 # 1387 # 2586 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.328 4_3 - 400 ATP_bind_3 PF01171.15 182 1.4e-07 25.0 0.0 2 2 1.7e-05 0.0016 11.7 0.0 87 154 247 310 245 328 0.85 # 1387 # 2586 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.328 2_29 - 162 ATP_bind_3 PF01171.15 182 0.0021 11.3 0.0 1 1 2.8e-05 0.0027 11.0 0.0 1 58 52 109 52 129 0.78 # 14422 # 14907 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.494 10_3 - 347 Seryl_tRNA_N PF02403.17 108 0.00019 15.2 10.1 1 3 0.0075 1.4 2.8 2.6 60 99 156 195 146 199 0.73 # 750 # 1790 # -1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.461 10_3 - 347 Seryl_tRNA_N PF02403.17 108 0.00019 15.2 10.1 2 3 1e-06 0.00019 15.2 10.1 19 101 216 295 202 297 0.91 # 750 # 1790 # -1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.461 10_3 - 347 Seryl_tRNA_N PF02403.17 108 0.00019 15.2 10.1 3 3 0.0032 0.61 4.0 1.0 68 105 290 327 288 329 0.91 # 750 # 1790 # -1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.461 6_1 - 262 MipZ PF09140.6 261 5.4e-10 32.5 0.0 1 2 6.7e-10 1.3e-07 24.8 0.0 2 52 4 55 3 79 0.83 # 142 # 927 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 6_1 - 262 MipZ PF09140.6 261 5.4e-10 32.5 0.0 2 2 0.00051 0.095 5.5 0.0 90 121 118 149 89 166 0.74 # 142 # 927 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 4_5 - 298 AAA_2 PF07724.9 171 3.1e-20 66.5 0.0 1 1 3.2e-22 6e-20 65.6 0.0 7 169 44 201 40 203 0.94 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 7_12 - 258 DUF87 PF01935.12 229 6.2e-09 29.7 0.0 1 1 8.2e-11 7.8e-09 29.4 0.0 23 63 32 71 24 128 0.86 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 1_3 - 815 DUF87 PF01935.12 229 6.2e-07 23.2 0.1 1 1 1.4e-08 1.3e-06 22.1 0.1 24 153 452 580 432 659 0.72 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_15 - 595 AAA_22 PF13401.1 131 4.1e-06 20.8 0.0 1 1 7e-06 0.00022 15.2 0.0 9 122 37 241 33 248 0.85 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 4_5 - 298 AAA_22 PF13401.1 131 3e-05 18.0 0.2 1 1 2e-05 0.00064 13.7 0.2 4 26 40 62 35 140 0.87 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 7_12 - 258 AAA_22 PF13401.1 131 3.7e-05 17.7 0.0 1 1 1.7e-06 5.4e-05 17.2 0.0 3 68 31 91 28 129 0.80 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 10_1 - 115 AAA_22 PF13401.1 131 0.00016 15.6 0.0 1 1 6.9e-06 0.00022 15.2 0.0 8 69 23 93 16 107 0.62 # 119 # 463 # -1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.467 1_16 - 323 AAA_22 PF13401.1 131 0.00024 15.1 0.0 1 1 1.6e-05 0.0005 14.0 0.0 5 54 62 103 56 162 0.77 # 18714 # 19682 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 1_3 - 815 AAA_22 PF13401.1 131 0.0013 12.7 0.0 1 2 0.0022 0.069 7.1 0.0 5 27 452 474 447 506 0.82 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 1_3 - 815 AAA_22 PF13401.1 131 0.0013 12.7 0.0 2 2 0.065 2 2.3 0.0 88 102 650 667 607 718 0.73 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 1_32 - 542 DNA_methylase PF00145.12 335 2.8e-28 92.7 0.0 1 1 7.2e-30 1.3e-27 90.5 0.0 3 333 126 441 124 443 0.76 # 30996 # 32621 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 6_1 - 262 SRP54 PF00448.17 196 0.0017 11.6 0.1 1 2 0.001 0.19 4.9 0.1 11 38 13 41 3 45 0.83 # 142 # 927 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 6_1 - 262 SRP54 PF00448.17 196 0.0017 11.6 0.1 2 2 0.0014 0.27 4.4 0.0 82 154 125 198 104 208 0.71 # 142 # 927 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_16 - 323 AAA_3 PF07726.6 131 0.00017 15.0 0.0 1 1 1.4e-06 0.00025 14.4 0.0 3 114 65 188 63 212 0.77 # 18714 # 19682 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 3_15 - 595 KAP_NTPase PF07693.9 325 1e-75 248.5 0.0 1 1 6.6e-78 1.2e-75 248.2 0.0 1 324 14 381 14 382 0.96 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 2_4 - 417 N6_N4_Mtase PF01555.13 231 9.4e-25 81.2 0.0 1 1 1.7e-26 1.6e-24 80.4 0.0 1 228 129 389 129 392 0.82 # 912 # 2162 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_26 - 94 N6_N4_Mtase PF01555.13 231 1.3e-05 18.5 0.0 1 1 1.6e-07 1.5e-05 18.4 0.0 170 223 18 72 2 77 0.80 # 28072 # 28353 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.482 4_5 - 298 AAA_17 PF13207.1 121 5.2e-06 21.1 0.1 1 1 4e-07 2.5e-05 18.9 0.1 2 47 43 90 42 263 0.80 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 3_15 - 595 AAA_17 PF13207.1 121 1.5e-05 19.7 0.3 1 1 1.2e-06 7.4e-05 17.4 0.1 2 35 35 79 34 251 0.82 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 1_16 - 323 AAA_17 PF13207.1 121 4.9e-05 18.0 0.0 1 1 1.7e-06 0.00011 16.9 0.0 3 27 65 89 64 162 0.90 # 18714 # 19682 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 3_15 - 595 AAA_21 PF13304.1 303 0.00059 13.6 0.5 1 2 0.001 0.19 5.4 0.0 9 61 42 86 35 101 0.79 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 3_15 - 595 AAA_21 PF13304.1 303 0.00059 13.6 0.5 2 2 0.00051 0.096 6.4 0.1 90 200 165 279 150 311 0.88 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 7_12 - 258 MobB PF03205.9 140 0.00049 13.6 0.0 1 1 4.3e-06 0.00081 12.9 0.0 4 34 36 66 34 75 0.90 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 4_3 - 400 NAD_synthase PF02540.12 242 2.5e-07 23.6 0.1 1 1 2.8e-09 5.3e-07 22.5 0.0 11 87 137 214 126 229 0.84 # 1387 # 2586 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.328 6_1 - 262 ArsA_ATPase PF02374.10 305 1.3e-05 18.1 0.0 1 2 3e-07 5.7e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 142 # 927 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 6_1 - 262 ArsA_ATPase PF02374.10 305 1.3e-05 18.1 0.0 2 2 0.032 6 -0.5 0.0 124 136 124 136 106 142 0.80 # 142 # 927 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 4_5 - 298 MCM PF00493.18 331 3e-05 16.7 0.0 1 1 2.4e-07 4.4e-05 16.1 0.0 60 135 43 119 40 124 0.90 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 1_16 - 323 T2SE PF00437.15 272 7.9e-05 15.4 0.0 1 1 3e-06 0.00019 14.2 0.0 105 148 40 81 11 100 0.80 # 18714 # 19682 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 7_12 - 258 T2SE PF00437.15 272 0.00013 14.7 0.0 1 1 3.2e-06 0.0002 14.1 0.0 126 162 30 66 15 94 0.82 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 4_5 - 298 T2SE PF00437.15 272 0.0016 11.1 0.0 1 1 4e-05 0.0025 10.5 0.0 129 149 41 61 10 79 0.81 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 3_15 - 595 Zeta_toxin PF06414.7 201 2.7e-05 17.1 0.0 1 1 7.2e-07 4.5e-05 16.4 0.0 14 52 30 70 18 92 0.90 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 4_5 - 298 Zeta_toxin PF06414.7 201 0.00012 15.0 0.0 1 1 4e-06 0.00025 14.0 0.0 14 39 38 63 28 77 0.83 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 7_12 - 258 Zeta_toxin PF06414.7 201 0.002 11.0 0.1 1 1 4.7e-05 0.003 10.5 0.1 20 50 36 68 29 123 0.84 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 7_12 - 258 SMC_N PF02463.14 220 0.0011 12.0 0.0 1 1 9.1e-06 0.0017 11.4 0.0 18 43 26 51 20 62 0.87 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 4_3 - 400 TIGR02432 TIGR02432 189 3.4e-08 27.1 0.0 1 2 3.2e-05 0.003 11.0 0.0 1 29 146 173 146 217 0.74 # 1387 # 2586 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.328 4_3 - 400 TIGR02432 TIGR02432 189 3.4e-08 27.1 0.0 2 2 4.1e-06 0.00039 13.9 0.0 91 163 248 315 246 329 0.83 # 1387 # 2586 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.328 2_29 - 162 TIGR02432 TIGR02432 189 0.00044 13.7 0.0 1 1 6.1e-06 0.00058 13.3 0.0 1 58 52 109 52 119 0.86 # 14422 # 14907 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.494 1_16 - 323 Arch_ATPase PF01637.13 234 7.9e-05 16.2 0.0 1 1 1.4e-06 0.00013 15.5 0.0 4 44 45 85 43 94 0.91 # 18714 # 19682 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 3_15 - 595 Arch_ATPase PF01637.13 234 0.00081 12.9 0.1 1 1 6.1e-05 0.0057 10.1 0.1 25 128 37 213 27 285 0.66 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 3_13 - 435 QueC PF06508.8 210 5.5e-11 35.9 0.7 1 2 1.8e-05 0.0034 10.4 0.0 2 48 150 196 149 251 0.90 # 10896 # 12200 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.448 3_13 - 435 QueC PF06508.8 210 5.5e-11 35.9 0.7 2 2 1.8e-09 3.3e-07 23.5 0.5 134 207 277 352 274 355 0.89 # 10896 # 12200 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.448 3_15 - 595 AAA_16 PF13191.1 185 1e-09 32.5 0.1 1 1 1.4e-10 6.5e-09 29.8 0.0 25 165 33 218 19 235 0.69 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 4_5 - 298 AAA_16 PF13191.1 185 1.2e-05 19.2 0.4 1 1 8.6e-07 4e-05 17.4 0.1 23 48 39 63 20 95 0.83 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 1_3 - 815 AAA_16 PF13191.1 185 2.1e-05 18.4 0.1 1 1 2.4e-06 0.00011 16.0 0.1 20 173 447 637 439 647 0.48 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 1_16 - 323 AAA_16 PF13191.1 185 4.7e-05 17.2 0.8 1 1 3e-06 0.00014 15.7 0.0 7 48 47 85 42 99 0.79 # 18714 # 19682 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 7_12 - 258 AAA_23 PF13476.1 202 0.0016 12.6 0.1 1 1 1.4e-05 0.0027 11.8 0.1 19 37 32 50 21 62 0.85 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 4_5 - 298 AAA_18 PF13238.1 129 5.6e-05 17.3 0.3 1 2 2e-06 0.00038 14.6 0.2 2 28 44 78 43 237 0.80 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 4_5 - 298 AAA_18 PF13238.1 129 5.6e-05 17.3 0.3 2 2 0.057 11 0.2 0.1 32 60 220 245 181 280 0.56 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 6_1 - 262 CbiA PF01656.18 195 1.1e-30 100.3 0.0 1 1 1.5e-32 1.4e-30 99.9 0.0 1 184 5 217 5 230 0.78 # 142 # 927 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_3 - 815 CbiA PF01656.18 195 0.0013 12.0 0.0 1 1 2.9e-05 0.0027 10.9 0.0 3 45 455 497 454 596 0.74 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 7_12 - 258 KaiC PF06745.8 227 0.00086 12.2 0.0 1 1 7.8e-06 0.0015 11.5 0.0 21 60 34 72 29 89 0.75 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 4_5 - 298 AAA_14 PF13173.1 128 0.00024 14.8 0.4 1 1 1.2e-05 0.0012 12.6 0.0 2 75 40 119 39 189 0.68 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 10_1 - 115 AAA_14 PF13173.1 128 0.00033 14.4 0.0 1 1 3.9e-06 0.00037 14.2 0.0 10 46 27 62 18 96 0.77 # 119 # 463 # -1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.467 7_12 - 258 SRPRB PF09439.5 181 0.0025 10.8 0.0 1 1 3e-05 0.0056 9.7 0.0 6 30 35 59 30 84 0.78 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 7_12 - 258 AAA_29 PF13555.1 62 8.3e-05 15.9 0.0 1 1 2e-06 0.00019 14.8 0.0 21 42 31 51 22 63 0.80 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 1_16 - 323 AAA_29 PF13555.1 62 0.0022 11.3 1.0 1 1 5.4e-05 0.005 10.2 0.3 21 38 59 76 54 79 0.86 # 18714 # 19682 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 4_5 - 298 AAA PF00004.24 132 2.3e-08 28.1 0.0 1 1 4.7e-10 4.4e-08 27.2 0.0 1 99 43 146 43 179 0.75 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 1_16 - 323 AAA PF00004.24 132 0.00065 13.7 0.1 1 1 1.5e-05 0.0014 12.6 0.1 2 33 65 96 64 149 0.83 # 18714 # 19682 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 1_37 - 772 PAPS_reduct PF01507.14 174 5.1e-05 17.0 0.0 1 1 1e-06 0.0002 15.0 0.0 3 151 69 256 67 262 0.69 # 34808 # 37123 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.511 4_5 - 298 Sigma54_activat PF00158.21 168 2.9e-05 17.4 0.0 1 2 1.6e-05 0.0029 10.9 0.0 16 48 34 66 23 89 0.83 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 4_5 - 298 Sigma54_activat PF00158.21 168 2.9e-05 17.4 0.0 2 2 0.0018 0.33 4.2 0.0 87 108 99 120 90 125 0.88 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 6_4 - 212 N6_Mtase PF02384.11 311 1.6e-06 21.2 0.0 1 1 1.3e-08 2.4e-06 20.6 0.0 3 93 71 162 69 186 0.73 # 2479 # 3114 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_5 - 298 DUF258 PF03193.11 161 0.0019 11.2 0.0 1 1 1.4e-05 0.0027 10.7 0.0 34 60 39 65 17 116 0.79 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 1_3 - 815 TraG-D_C PF12696.2 128 1.1e-06 22.3 0.0 1 1 1.4e-08 2.7e-06 21.1 0.0 17 75 673 727 655 733 0.82 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 6_1 - 262 AAA_31 PF13614.1 157 3.9e-10 33.7 0.0 1 1 4.5e-12 8.4e-10 32.6 0.0 1 149 3 157 3 165 0.80 # 142 # 927 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_4 - 417 Methyltransf_26 PF13659.1 117 0.00065 13.5 0.0 1 1 1.8e-05 0.0033 11.3 0.0 68 116 126 180 46 181 0.82 # 912 # 2162 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.522 10_1 - 115 AAA_30 PF13604.1 196 6.1e-06 19.7 0.0 1 1 3.7e-08 7e-06 19.5 0.0 18 83 19 84 11 109 0.76 # 119 # 463 # -1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.467 7_12 - 258 FtsK_SpoIIIE PF01580.13 205 1.4e-07 25.0 0.0 1 1 2.8e-09 2.7e-07 24.0 0.0 35 81 28 71 15 94 0.85 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 1_3 - 815 FtsK_SpoIIIE PF01580.13 205 1.1e-06 22.1 0.0 1 1 4e-08 3.7e-06 20.3 0.0 33 133 446 559 426 697 0.60 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_15 - 595 AAA_35 PF14516.1 331 0.00025 13.5 0.0 1 2 0.00014 0.026 6.9 0.0 10 72 8 73 3 104 0.79 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 3_15 - 595 AAA_35 PF14516.1 331 0.00025 13.5 0.0 2 2 0.00083 0.16 4.3 0.0 121 145 197 221 178 231 0.84 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 3_15 - 595 ABC_tran PF00005.22 137 2.7e-05 18.3 0.0 1 1 1.3e-06 8.1e-05 16.7 0.0 14 51 35 73 33 114 0.81 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 7_12 - 258 ABC_tran PF00005.22 137 0.00076 13.6 0.0 1 1 1.7e-05 0.001 13.2 0.0 13 62 34 83 26 144 0.68 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 1_16 - 323 ABC_tran PF00005.22 137 0.0014 12.8 0.0 1 1 4e-05 0.0025 11.9 0.0 11 46 61 96 55 117 0.85 # 18714 # 19682 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 10_1 - 115 AAA_19 PF13245.1 76 3.2e-10 33.5 0.0 1 1 4.9e-12 4.6e-10 33.0 0.0 8 75 18 77 12 78 0.89 # 119 # 463 # -1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.467 1_16 - 323 AAA_19 PF13245.1 76 0.0003 14.3 0.1 1 1 7e-06 0.00066 13.3 0.1 10 35 61 86 51 112 0.76 # 18714 # 19682 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 1_3 - 815 AAA_10 PF12846.2 304 6e-59 193.7 0.1 1 1 1.1e-60 1e-58 193.0 0.1 1 296 451 728 451 737 0.93 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 7_12 - 258 AAA_10 PF12846.2 304 3.2e-08 27.1 0.0 1 1 4.2e-10 3.9e-08 26.8 0.0 2 93 33 165 32 181 0.75 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 10_1 - 115 ResIII PF04851.10 184 1.4e-07 25.3 0.0 1 1 1.6e-09 1.5e-07 25.2 0.0 23 78 17 72 7 107 0.75 # 119 # 463 # -1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.467 7_12 - 258 ResIII PF04851.10 184 4.8e-05 17.0 0.0 1 1 7.8e-07 7.3e-05 16.4 0.0 23 57 30 66 16 79 0.80 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 1_3 - 815 Zot PF05707.7 193 0.0014 11.9 0.0 1 1 2.4e-05 0.0046 10.2 0.0 79 132 652 701 618 720 0.80 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 10_1 - 115 Viral_helicase1 PF01443.13 234 0.00014 15.2 0.0 1 1 8.5e-07 0.00016 15.0 0.0 1 51 22 75 22 90 0.68 # 119 # 463 # -1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.467 7_12 - 258 DEAD PF00270.24 169 3.4e-06 20.4 0.0 1 1 2.2e-08 4.2e-06 20.1 0.0 6 52 24 68 18 142 0.88 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 7_12 - 258 DUF853 PF05872.7 504 4.6e-06 19.0 0.0 1 1 3.5e-08 6.5e-06 18.5 0.0 14 60 25 71 17 86 0.92 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 7_12 - 258 TrwB_AAD_bind PF10412.4 386 1.1e-11 37.8 0.0 1 1 1.4e-13 1.3e-11 37.5 0.0 14 54 31 71 25 154 0.85 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 1_3 - 815 TrwB_AAD_bind PF10412.4 386 1.9e-08 27.1 0.0 1 2 1.5e-05 0.0014 11.0 0.0 6 72 442 517 438 519 0.85 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 1_3 - 815 TrwB_AAD_bind PF10412.4 386 1.9e-08 27.1 0.0 2 2 2.4e-06 0.00022 13.7 0.1 229 301 639 711 610 730 0.67 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 1_3 - 815 Guanylate_kin PF00625.16 183 0.00029 14.1 0.1 1 3 0.0039 0.72 3.0 0.0 3 26 452 475 450 503 0.86 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 1_3 - 815 Guanylate_kin PF00625.16 183 0.00029 14.1 0.1 2 3 0.011 2 1.6 0.1 75 115 595 636 590 701 0.82 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 1_3 - 815 Guanylate_kin PF00625.16 183 0.00029 14.1 0.1 3 3 0.0011 0.2 4.8 0.0 75 131 713 769 697 776 0.87 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 4_5 - 298 Sigma54_activ_2 PF14532.1 138 2.6e-05 18.1 0.0 1 1 2.5e-07 4.7e-05 17.3 0.0 10 83 29 119 25 124 0.79 # 3794 # 4687 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.310 7_12 - 258 T4SS-DNA_transf PF02534.9 469 3.8e-05 16.2 0.0 1 1 2.3e-07 4.3e-05 16.0 0.0 42 122 33 116 11 178 0.69 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 7_12 - 258 ArgK PF03308.11 267 0.0017 10.9 0.0 1 1 1.3e-05 0.0025 10.4 0.0 23 68 29 69 20 74 0.80 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 2_29 - 162 tRNA_Me_trans PF03054.11 356 4.8e-05 15.8 0.0 1 1 2.9e-07 5.4e-05 15.6 0.0 2 74 52 125 51 145 0.73 # 14422 # 14907 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.494 10_1 - 115 UvrD-helicase PF00580.16 315 8.6e-06 19.0 0.1 1 1 6.7e-08 1.3e-05 18.4 0.1 2 67 8 67 7 108 0.71 # 119 # 463 # -1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.467 7_12 - 258 AAA_25 PF13481.1 194 0.00056 13.1 0.0 1 1 2.5e-05 0.0012 12.1 0.0 34 137 33 125 23 130 0.77 # 6377 # 7150 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 1_3 - 815 AAA_25 PF13481.1 194 0.00064 12.9 0.0 1 1 3.4e-05 0.0016 11.6 0.0 36 86 454 494 447 532 0.82 # 6605 # 9049 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 6_1 - 262 AAA_25 PF13481.1 194 0.00082 12.6 0.0 1 1 2.5e-05 0.0012 12.1 0.0 42 91 12 51 11 133 0.82 # 142 # 927 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 3_15 - 595 AAA_25 PF13481.1 194 0.00093 12.4 0.0 1 2 0.078 3.7 0.7 0.0 28 50 29 49 22 84 0.88 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 3_15 - 595 AAA_25 PF13481.1 194 0.00093 12.4 0.0 2 2 0.00027 0.013 8.7 0.0 119 158 180 219 145 231 0.79 # 12949 # 14733 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 1_16 - 323 AAA_5 PF07728.9 139 1.8e-18 60.4 0.0 1 1 1.6e-20 3e-18 59.7 0.0 2 125 64 188 63 197 0.94 # 18714 # 19682 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5dfe25f8-d36a-481f-a983-8235ccd5f2a3 # Target file: checkm_output/bins/pm1507/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1507/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5dfe25f8-d36a-481f-a983-8235ccd5f2a3 checkm_output/bins/pm1507/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:34 2020 # [ok]