# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 251 Eno-Rase_NADH_b PF12242.3 78 0.00013 14.2 0.2 1 1 3.4e-06 0.00024 13.3 0.2 37 76 5 42 1 44 0.88 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_52 - 209 MipZ PF09140.6 261 3.8e-22 71.0 0.7 1 3 9.7e-13 6.8e-11 34.1 0.0 2 53 2 52 1 60 0.89 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 209 MipZ PF09140.6 261 3.8e-22 71.0 0.7 2 3 1.5e-12 1.1e-10 33.4 0.0 87 140 65 118 56 129 0.92 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 209 MipZ PF09140.6 261 3.8e-22 71.0 0.7 3 3 0.02 1.4 0.2 0.0 237 257 186 206 173 208 0.80 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 209 YhjQ PF06564.7 244 5e-06 18.4 0.3 1 2 7.3e-07 5.1e-05 15.1 0.4 4 38 3 37 1 49 0.89 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 209 YhjQ PF06564.7 244 5e-06 18.4 0.3 2 2 0.025 1.8 0.2 0.0 104 144 65 103 44 112 0.77 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_8 - 251 3HCDH_N PF02737.13 180 2.3e-05 16.5 0.0 1 1 1.1e-06 3.8e-05 15.8 0.0 6 49 14 58 7 87 0.77 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_25 - 258 3HCDH_N PF02737.13 180 0.00012 14.1 2.1 1 1 5.7e-06 0.0002 13.5 0.9 6 70 15 80 9 94 0.81 # 18998 # 19771 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_56 - 526 UvrD_C_2 PF13538.1 104 8.7e-08 24.7 0.1 1 1 3.3e-09 2.3e-07 23.3 0.1 4 102 91 194 51 196 0.69 # 50268 # 51845 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.603 1_52 - 209 DUF87 PF01935.12 229 0.00055 12.2 0.1 1 1 1.5e-05 0.001 11.2 0.0 33 61 11 38 4 93 0.95 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 209 SRP54 PF00448.17 196 2.6e-08 25.9 0.1 1 1 1.1e-09 8e-08 24.3 0.1 4 98 2 91 1 141 0.79 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_47 - 668 AAA_15 PF13175.1 415 1.6e-27 88.9 11.2 1 1 2.6e-27 1.8e-25 82.2 5.8 2 415 4 422 3 422 0.72 # 39965 # 41968 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.423 1_52 - 209 AAA_17 PF13207.1 121 8.3e-05 15.8 0.0 1 1 2e-06 0.00014 15.1 0.0 9 77 11 84 9 206 0.76 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_47 - 668 AAA_21 PF13304.1 303 6.5e-18 58.0 5.1 1 1 9.3e-20 6.5e-18 58.0 5.1 1 302 25 422 25 423 0.87 # 39965 # 41968 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.423 1_52 - 209 MobB PF03205.9 140 2.8e-05 16.3 0.1 1 1 1.2e-06 8.1e-05 14.8 0.1 10 41 11 40 1 45 0.79 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_7 - 187 NAD_synthase PF02540.12 242 0.00055 11.3 0.5 1 1 1.3e-05 0.00089 10.6 0.0 27 78 104 154 98 181 0.80 # 4264 # 4824 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_52 - 209 ArsA_ATPase PF02374.10 305 6.9e-09 27.5 0.9 1 2 2.3e-10 1.6e-08 26.3 0.1 3 48 3 48 1 69 0.85 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 209 ArsA_ATPase PF02374.10 305 6.9e-09 27.5 0.9 2 2 0.055 3.9 -1.2 0.0 121 135 69 85 47 86 0.74 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_8 - 251 F420_oxidored PF03807.12 96 0.00024 14.0 0.0 1 2 2.4e-05 0.0017 11.3 0.0 6 47 14 51 7 81 0.79 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 251 F420_oxidored PF03807.12 96 0.00024 14.0 0.0 2 2 0.085 5.9 -0.1 0.0 12 48 180 212 161 229 0.68 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_47 - 668 SMC_N PF02463.14 220 1.9e-06 19.6 2.6 1 2 3.5e-08 2.5e-06 19.3 0.1 2 44 3 43 2 47 0.83 # 39965 # 41968 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.423 1_47 - 668 SMC_N PF02463.14 220 1.9e-06 19.6 2.6 2 2 0.043 3 -0.7 0.6 108 108 301 301 129 437 0.53 # 39965 # 41968 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.423 1_52 - 209 VirC1 PF07015.6 231 1.1e-09 30.1 0.1 1 1 4.7e-11 3.3e-09 28.5 0.1 3 195 2 190 1 206 0.72 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 209 Fer4_NifH PF00142.13 273 5.7e-06 18.0 0.0 1 1 2.3e-07 1.6e-05 16.5 0.0 8 38 9 39 2 46 0.89 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_47 - 668 AAA_23 PF13476.1 202 2.5e-09 30.1 2.3 1 1 3.6e-11 2.5e-09 30.1 2.3 3 199 7 272 5 281 0.59 # 39965 # 41968 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.423 1_8 - 251 adh_short PF00106.20 167 1.3e-36 118.4 0.2 1 2 3.7e-37 1.3e-35 115.2 0.1 1 166 7 172 7 173 0.93 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 251 adh_short PF00106.20 167 1.3e-36 118.4 0.2 2 2 0.036 1.3 1.3 0.0 63 95 199 232 185 240 0.86 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_25 - 258 adh_short PF00106.20 167 1.5e-24 79.2 2.7 1 1 5.4e-26 1.9e-24 78.8 2.7 3 166 10 175 8 176 0.88 # 18998 # 19771 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_52 - 209 CbiA PF01656.18 195 5.8e-24 76.9 0.1 1 2 3.8e-25 2.6e-23 74.8 0.0 1 156 3 140 3 177 0.79 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 209 CbiA PF01656.18 195 5.8e-24 76.9 0.1 2 2 0.0073 0.51 2.1 0.0 119 158 136 176 131 206 0.73 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_8 - 251 Polysacc_synt_2 PF02719.10 294 3.5e-05 15.2 0.0 1 1 6.1e-07 4.3e-05 14.9 0.0 2 132 10 145 9 181 0.70 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_31 - 440 Glyco_hydro_4 PF02056.11 183 1e-56 183.5 0.0 1 1 2e-58 1.4e-56 183.1 0.0 1 182 5 185 5 186 0.98 # 24216 # 25535 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_47 - 668 AAA_29 PF13555.1 62 0.0006 11.8 0.0 1 1 1.9e-05 0.0014 10.6 0.0 15 45 18 45 3 51 0.73 # 39965 # 41968 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.423 1_8 - 251 KR PF08659.5 181 3.5e-18 58.3 0.0 1 1 3.4e-19 1.2e-17 56.6 0.0 3 162 9 167 8 188 0.90 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_25 - 258 KR PF08659.5 181 2.1e-12 39.4 3.0 1 1 1e-13 3.5e-12 38.7 3.0 4 162 11 170 9 190 0.83 # 18998 # 19771 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_52 - 209 AAA_31 PF13614.1 157 6.5e-07 21.8 0.0 1 2 5.9e-08 4.1e-06 19.2 0.0 2 42 2 42 1 56 0.87 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 209 AAA_31 PF13614.1 157 6.5e-07 21.8 0.0 2 2 0.051 3.6 -0.1 0.0 108 127 67 86 62 113 0.68 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_64 - 111 Ribosomal_L9_N PF01281.14 48 0.0001 14.0 0.1 1 1 4.4e-06 0.00031 12.4 0.1 10 32 66 88 64 90 0.93 # 57403 # 57735 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_47 - 668 ABC_tran PF00005.22 137 0.00028 13.6 3.3 1 1 4.8e-06 0.00034 13.4 0.4 9 80 21 131 17 218 0.70 # 39965 # 41968 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.423 1_52 - 209 AAA_19 PF13245.1 76 2.1e-05 16.7 0.1 1 2 3.8e-06 0.00026 13.2 0.1 20 48 11 35 9 43 0.89 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 209 AAA_19 PF13245.1 76 2.1e-05 16.7 0.1 2 2 0.031 2.2 0.6 0.0 44 62 137 155 120 178 0.76 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_25 - 258 NAD_binding_10 PF13460.1 183 0.00017 14.0 1.2 1 1 1.3e-05 0.00094 11.6 1.2 2 55 11 58 10 235 0.80 # 18998 # 19771 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_52 - 209 AAA_10 PF12846.2 304 4.5e-05 15.4 0.1 1 2 2.9e-06 0.0002 13.2 0.0 11 39 11 39 3 67 0.90 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 209 AAA_10 PF12846.2 304 4.5e-05 15.4 0.1 2 2 0.035 2.5 -0.2 0.0 178 199 182 202 137 207 0.77 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_25 - 258 adh_short_C2 PF13561.1 241 4.3e-32 104.1 1.1 1 1 1.4e-33 4.8e-32 104.0 1.1 5 240 16 252 13 253 0.88 # 18998 # 19771 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 251 adh_short_C2 PF13561.1 241 2.8e-30 98.2 0.0 1 1 9.4e-32 3.3e-30 98.0 0.0 3 239 15 246 13 248 0.91 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 251 3Beta_HSD PF01073.14 280 0.00012 13.2 0.2 1 1 2.4e-06 0.00017 12.7 0.2 1 104 10 126 10 152 0.62 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 251 Epimerase PF01370.16 236 1.6e-07 23.3 0.4 1 2 1.1e-08 7.4e-07 21.2 0.2 1 121 9 147 9 181 0.72 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 251 Epimerase PF01370.16 236 1.6e-07 23.3 0.4 2 2 0.032 2.2 -0.0 0.0 205 231 211 239 189 243 0.84 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_31 - 440 Ldh_1_N PF00056.18 141 0.00018 13.8 0.0 1 2 0.076 5.3 -0.7 0.0 2 37 5 43 4 84 0.69 # 24216 # 25535 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_31 - 440 Ldh_1_N PF00056.18 141 0.00018 13.8 0.0 2 2 2.9e-05 0.002 10.4 0.0 95 135 125 165 121 171 0.91 # 24216 # 25535 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_8 - 251 TrkA_N PF02254.13 116 3.3e-05 16.3 0.1 1 1 8.7e-07 6.1e-05 15.5 0.1 5 58 14 73 10 81 0.85 # 4839 # 5591 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_52 - 209 AAA_24 PF13479.1 213 0.0003 12.8 0.0 1 1 7.2e-06 0.0005 12.1 0.0 11 77 9 85 1 91 0.82 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 209 AAA_25 PF13481.1 194 3.9e-05 15.5 0.0 1 1 1.1e-06 7.7e-05 14.5 0.0 42 89 10 46 3 91 0.73 # 45429 # 46055 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fbb50124-5353-4275-b743-6f1d85adb7da # Target file: checkm_output/bins/pm1505/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1505/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fbb50124-5353-4275-b743-6f1d85adb7da checkm_output/bins/pm1505/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:34 2020 # [ok]