# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_13 - 144 Mg_chelatase PF01078.16 207 0.00023 13.1 0.0 1 1 3.9e-06 0.00035 12.5 0.0 24 42 99 117 84 127 0.90 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 IstB_IS21 PF01695.12 178 4e-73 237.3 0.1 1 2 0.098 4.3 -0.6 0.0 64 97 25 57 24 61 0.64 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_12 - 260 IstB_IS21 PF01695.12 178 4e-73 237.3 0.1 2 2 2e-74 8.6e-73 236.2 0.1 1 178 56 235 56 235 0.98 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 IstB_IS21 PF01695.12 178 2.4e-34 111.0 0.2 1 2 0.027 1.2 1.2 0.2 83 111 4 32 2 33 0.89 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 IstB_IS21 PF01695.12 178 2.4e-34 111.0 0.2 2 2 5.8e-35 2.6e-33 107.6 0.0 1 84 51 134 51 141 0.96 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_3 - 389 MipZ PF09140.6 261 1.7e-06 20.0 0.1 1 2 8.4e-08 7.4e-06 17.9 0.0 3 47 109 153 107 168 0.90 # 1297 # 2463 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_3 - 389 MipZ PF09140.6 261 1.7e-06 20.0 0.1 2 2 0.043 3.8 -0.8 0.0 88 128 224 264 211 274 0.76 # 1297 # 2463 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_25 - 153 UvrD_C_2 PF13538.1 104 2.9e-05 16.9 0.0 1 1 4.8e-07 4.2e-05 16.4 0.0 2 80 58 140 57 152 0.71 # 17978 # 18436 # 1 # ID=3_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_12 - 440 DUF87 PF01935.12 229 5.3e-05 15.8 0.2 1 1 1.3e-06 0.00012 14.7 0.2 24 47 163 186 162 193 0.91 # 9934 # 11253 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 2_12 - 260 AAA_22 PF13401.1 131 1.4e-06 21.3 0.2 1 2 4.5e-05 0.002 11.0 0.0 5 21 103 119 99 131 0.83 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_12 - 260 AAA_22 PF13401.1 131 1.4e-06 21.3 0.2 2 2 0.00073 0.032 7.1 0.0 88 103 154 181 126 203 0.66 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 AAA_22 PF13401.1 131 0.0003 13.7 0.0 1 1 1.5e-05 0.00068 12.5 0.0 6 24 99 117 94 138 0.83 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_17 PF13207.1 121 1.1e-05 18.9 0.0 1 2 0.025 2.2 1.9 0.0 20 53 8 46 4 91 0.62 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_17 PF13207.1 121 1.1e-05 18.9 0.0 2 2 1.8e-06 0.00016 15.3 0.0 2 20 100 118 99 136 0.80 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_3 - 389 ArsA_ATPase PF02374.10 305 1.5e-06 20.1 0.0 1 2 2.3e-06 0.0001 14.1 0.0 9 40 115 147 109 154 0.90 # 1297 # 2463 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_3 - 389 ArsA_ATPase PF02374.10 305 1.5e-06 20.1 0.0 2 2 0.0044 0.19 3.4 0.0 125 136 233 244 223 252 0.89 # 1297 # 2463 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_13 - 144 ArsA_ATPase PF02374.10 305 6.7e-05 14.7 0.0 1 1 2.4e-06 0.0001 14.1 0.0 5 34 101 130 97 133 0.87 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 PhoH PF02562.11 205 9.2e-08 24.2 0.1 1 1 7.1e-09 3.1e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 PhoH PF02562.11 205 1.9e-06 20.0 0.0 1 1 6.2e-08 2.7e-06 19.4 0.0 16 47 94 125 80 141 0.85 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 AFG1_ATPase PF03969.11 362 6.3e-05 14.6 0.2 1 1 2.8e-06 0.00024 12.6 0.2 63 216 103 254 43 259 0.72 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_3 - 389 VirC1 PF07015.6 231 8.7e-06 17.6 0.1 1 2 2.5e-05 0.0022 9.8 0.0 4 42 109 147 107 153 0.91 # 1297 # 2463 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_3 - 389 VirC1 PF07015.6 231 8.7e-06 17.6 0.1 2 2 0.00054 0.048 5.4 0.0 100 139 251 290 218 321 0.72 # 1297 # 2463 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 2_12 - 260 Arch_ATPase PF01637.13 234 0.00082 11.8 0.1 1 1 6.9e-05 0.003 9.9 0.0 8 37 90 119 87 140 0.79 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_12 - 440 Arch_ATPase PF01637.13 234 0.00085 11.7 0.0 1 1 3.2e-05 0.0014 11.1 0.0 30 131 172 265 150 273 0.79 # 9934 # 11253 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 3_13 - 144 AAA_16 PF13191.1 185 4e-07 22.9 0.1 1 2 0.0052 0.23 4.1 0.0 122 173 20 88 2 96 0.61 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_16 PF13191.1 185 4e-07 22.9 0.1 2 2 4.7e-07 2.1e-05 17.3 0.0 23 61 96 134 87 139 0.81 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 AAA_16 PF13191.1 185 5.8e-05 15.9 1.1 1 1 5.9e-06 0.00026 13.7 0.1 21 41 99 119 86 151 0.78 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 AAA_18 PF13238.1 129 0.00013 15.0 0.1 1 1 3.6e-06 0.00032 13.8 0.0 1 19 100 118 100 139 0.79 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_3 - 389 CbiA PF01656.18 195 5.7e-33 106.7 0.0 1 1 1.8e-34 7.8e-33 106.2 0.0 1 188 109 333 109 340 0.76 # 1297 # 2463 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_13 - 144 CbiA PF01656.18 195 3e-05 16.2 0.0 1 1 1.3e-06 5.9e-05 15.2 0.0 9 31 107 129 100 132 0.94 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 AAA_14 PF13173.1 128 1e-06 21.4 0.0 1 1 2.3e-08 2e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_12 - 260 AAA_29 PF13555.1 62 0.00066 12.0 0.0 1 1 1.4e-05 0.0013 11.1 0.0 19 59 98 139 89 141 0.72 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_12 - 260 AAA PF00004.24 132 1.6e-07 24.3 0.0 1 1 6.3e-09 2.8e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 AAA PF00004.24 132 6.6e-06 19.1 0.1 1 1 6.6e-07 2.9e-05 17.0 0.1 1 21 100 120 100 138 0.82 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 Bac_DnaA PF00308.13 219 9.4e-10 31.2 0.0 1 1 3.2e-11 1.4e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 Bac_DnaA PF00308.13 219 0.00072 11.9 0.0 1 1 2.8e-05 0.0012 11.2 0.0 34 68 97 129 71 136 0.77 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 Sigma54_activat PF00158.21 168 0.00012 14.3 0.1 1 1 8.2e-06 0.00072 11.8 0.1 18 53 98 133 82 198 0.72 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_12 - 260 DUF258 PF03193.11 161 1.1e-05 17.3 0.0 1 1 2e-07 1.7e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_3 - 389 AAA_31 PF13614.1 157 2.8e-06 20.1 0.1 1 2 1.6e-05 0.0007 12.3 0.0 2 49 108 155 107 178 0.86 # 1297 # 2463 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_3 - 389 AAA_31 PF13614.1 157 2.8e-06 20.1 0.1 2 2 0.002 0.086 5.5 0.1 116 151 229 267 217 271 0.79 # 1297 # 2463 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_13 - 144 AAA_31 PF13614.1 157 0.00021 14.0 0.0 1 1 1.5e-05 0.00067 12.3 0.0 10 36 106 132 85 136 0.93 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 NTPase_1 PF03266.10 168 0.0002 13.8 0.1 1 2 0.0016 0.14 4.5 0.1 2 30 105 133 104 153 0.83 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_12 - 260 NTPase_1 PF03266.10 168 0.0002 13.8 0.1 2 2 0.00025 0.022 7.2 0.0 88 112 157 181 144 204 0.72 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 AAA_33 PF13671.1 143 0.00022 13.8 0.3 1 2 0.07 6.2 -0.6 0.0 44 44 39 39 4 77 0.46 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_33 PF13671.1 143 0.00022 13.8 0.3 2 2 8.7e-06 0.00076 12.1 0.1 2 19 100 117 100 129 0.85 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_12 - 440 AAA_30 PF13604.1 196 0.00045 12.5 0.7 1 3 0.063 5.5 -0.8 0.0 47 72 61 86 53 96 0.91 # 9934 # 11253 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_12 - 440 AAA_30 PF13604.1 196 0.00045 12.5 0.7 2 3 0.00015 0.013 7.7 0.1 16 63 160 204 155 214 0.70 # 9934 # 11253 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_12 - 440 AAA_30 PF13604.1 196 0.00045 12.5 0.7 3 3 0.015 1.3 1.2 0.0 18 70 227 275 213 277 0.76 # 9934 # 11253 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 2_12 - 260 ABC_tran PF00005.22 137 0.00013 15.0 0.3 1 1 2.4e-05 0.0011 12.1 0.0 8 30 99 121 93 136 0.86 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_12 - 440 ABC_tran PF00005.22 137 0.00028 13.9 0.1 1 1 1.7e-05 0.00074 12.6 0.1 6 35 157 186 155 210 0.91 # 9934 # 11253 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_12 - 440 ATP-synt_ab PF00006.20 215 3.3e-77 251.5 0.0 1 1 5e-79 4.4e-77 251.1 0.0 2 215 149 358 148 358 0.99 # 9934 # 11253 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 3_13 - 144 RuvB_N PF05496.7 234 6.5e-05 14.7 0.0 1 1 1.9e-06 8.5e-05 14.4 0.0 48 70 95 117 68 137 0.85 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 RuvB_N PF05496.7 234 0.00032 12.5 0.0 1 1 1.3e-05 0.00057 11.7 0.0 50 119 102 182 92 190 0.65 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 AAA_19 PF13245.1 76 9.2e-08 24.5 0.2 1 1 8.3e-09 3.7e-07 22.6 0.1 13 48 100 131 87 133 0.88 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 AAA_19 PF13245.1 76 0.00037 13.0 0.0 1 1 2.1e-05 0.00093 11.7 0.0 10 37 103 129 96 154 0.81 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_12 - 260 AAA_10 PF12846.2 304 6.9e-06 18.3 0.7 1 3 0.055 2.4 0.1 0.0 127 169 38 82 8 95 0.68 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_12 - 260 AAA_10 PF12846.2 304 6.9e-06 18.3 0.7 2 3 1.9e-06 8.4e-05 14.8 0.1 1 33 102 134 102 171 0.89 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_12 - 260 AAA_10 PF12846.2 304 6.9e-06 18.3 0.7 3 3 0.048 2.1 0.3 0.0 202 247 142 192 134 202 0.68 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 AAA_10 PF12846.2 304 0.00022 13.4 0.0 1 1 8.4e-06 0.00037 12.7 0.0 3 35 99 131 98 139 0.87 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 ResIII PF04851.10 184 0.00032 13.3 0.0 1 2 6.9e-05 0.006 9.1 0.0 8 50 89 127 49 135 0.78 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_12 - 260 ResIII PF04851.10 184 0.00032 13.3 0.0 2 2 0.0088 0.77 2.3 0.0 112 163 131 181 127 202 0.72 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 ArgK PF03308.11 267 0.00013 13.5 0.0 1 1 2.2e-06 0.00019 12.9 0.0 28 60 96 128 80 133 0.86 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_24 PF13479.1 213 0.00045 12.5 0.0 1 1 7.7e-06 0.00068 12.0 0.0 5 23 99 117 95 129 0.86 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 NACHT PF05729.7 166 0.00018 13.9 0.0 1 1 4.8e-06 0.00042 12.7 0.0 3 27 100 124 98 137 0.84 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_25 PF13481.1 194 2.7e-07 22.9 0.0 1 1 1.3e-08 3.7e-07 22.4 0.0 22 64 81 129 57 138 0.76 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 AAA_25 PF13481.1 194 2.2e-05 16.6 0.0 1 1 1.2e-06 3.6e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_12 - 440 AAA_25 PF13481.1 194 4.8e-05 15.5 0.2 1 1 3.8e-06 0.00011 14.3 0.1 24 156 151 266 135 281 0.64 # 9934 # 11253 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 3_13 - 144 AAA_28 PF13521.1 163 0.00017 14.3 0.0 1 2 0.098 4.3 -0.0 0.0 98 125 22 49 6 76 0.55 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_28 PF13521.1 163 0.00017 14.3 0.0 2 2 1.9e-05 0.00084 12.1 0.0 2 25 100 127 99 136 0.76 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 AAA_28 PF13521.1 163 0.001 11.7 1.8 1 1 5.9e-05 0.0026 10.4 0.2 1 43 104 151 104 172 0.70 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 AAA_5 PF07728.9 139 3.6e-06 19.5 0.1 1 2 0.089 3.9 -0.1 0.0 91 126 13 49 3 61 0.52 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_5 PF07728.9 139 3.6e-06 19.5 0.1 2 2 4.1e-07 1.8e-05 17.2 0.0 1 37 99 138 99 140 0.81 # 8500 # 8931 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_12 - 260 AAA_5 PF07728.9 139 2.6e-05 16.7 0.3 1 1 7.2e-06 0.00032 13.2 0.2 1 74 104 173 104 180 0.72 # 12240 # 13019 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6c7820d6-7f7b-4f8d-914c-fffa17eadabf # Target file: checkm_output/bins/pm1497/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1497/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6c7820d6-7f7b-4f8d-914c-fffa17eadabf checkm_output/bins/pm1497/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:26 2020 # [ok]