# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 65 cobW PF02492.14 178 2.5e-05 13.1 0.4 1 1 3.4e-06 2.7e-05 13.0 0.4 128 175 3 49 1 53 0.84 # 8438 # 8632 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.497 1_1 - 601 IstB_IS21 PF01695.12 178 3.2e-73 234.2 0.1 1 1 7.6e-74 6.1e-73 233.3 0.1 1 178 397 576 397 576 0.98 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_22 PF13401.1 131 9.6e-07 18.4 0.1 1 2 6.1e-05 0.00049 9.6 0.0 5 21 444 460 440 473 0.83 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_22 PF13401.1 131 9.6e-07 18.4 0.1 2 2 0.0015 0.012 5.1 0.0 88 103 496 522 474 543 0.66 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 PhoH PF02562.11 205 3.5e-08 22.2 0.0 1 1 1.4e-08 1.1e-07 20.6 0.0 11 47 435 471 425 483 0.80 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_8 - 65 Phe_tRNA-synt_N PF02912.13 73 2.3e-05 13.5 0.1 1 1 4.4e-06 3.5e-05 12.9 0.1 26 61 22 57 21 61 0.94 # 8438 # 8632 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.497 1_1 - 601 AAA_16 PF13191.1 185 2.6e-06 16.8 0.5 1 2 0.024 0.19 1.0 0.0 39 90 55 112 54 128 0.77 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_16 PF13191.1 185 2.6e-06 16.8 0.5 2 2 7.4e-06 5.9e-05 12.4 0.0 21 41 440 460 426 520 0.81 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_14 PF13173.1 128 3.5e-07 19.6 0.0 1 1 1.1e-07 9.1e-07 18.2 0.0 2 95 443 543 442 560 0.67 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA PF00004.24 132 6e-08 22.3 0.0 1 1 1.4e-08 1.1e-07 21.4 0.0 1 74 446 521 446 553 0.78 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 Bac_DnaA PF00308.13 219 3.4e-10 29.2 0.0 1 1 7.8e-11 6.3e-10 28.3 0.0 37 134 446 542 416 548 0.86 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 DUF258 PF03193.11 161 4e-06 15.4 0.0 1 1 8.6e-07 6.9e-06 14.7 0.0 21 75 429 495 411 525 0.69 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 NTPase_1 PF03266.10 168 0.00015 10.9 0.9 1 2 0.0048 0.039 3.0 0.1 2 30 446 474 445 493 0.83 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 NTPase_1 PF03266.10 168 0.00015 10.9 0.9 2 2 0.00077 0.0062 5.6 0.0 88 112 498 522 484 544 0.73 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 ABC_tran PF00005.22 137 5.1e-05 13.0 0.2 1 1 3.6e-05 0.00029 10.5 0.0 8 30 440 462 434 474 0.86 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_10 PF12846.2 304 3e-06 16.1 0.6 1 2 0.047 0.37 -0.6 0.0 126 168 370 422 249 434 0.69 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_10 PF12846.2 304 3e-06 16.1 0.6 2 2 2.9e-06 2.3e-05 13.2 0.0 1 33 443 475 443 513 0.88 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_25 PF13481.1 194 6.5e-06 15.0 0.0 1 1 1.7e-06 1.3e-05 14.0 0.0 25 58 434 468 413 514 0.80 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_5 PF07728.9 139 1.6e-05 14.0 0.2 1 1 1.3e-05 0.00011 11.3 0.1 1 74 445 514 445 521 0.71 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cd1049d2-7682-4b9a-ab0e-03c24e83254c # Target file: checkm_output/bins/pm1488/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1488/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cd1049d2-7682-4b9a-ab0e-03c24e83254c checkm_output/bins/pm1488/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:19 2020 # [ok]