# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_60 - 144 Mg_chelatase PF01078.16 207 0.00044 13.1 0.0 1 1 3.9e-06 0.00065 12.5 0.0 24 42 99 117 84 127 0.90 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_76 - 226 UPF0020 PF01170.13 180 3e-06 20.5 0.0 1 2 8.8e-05 0.015 8.5 0.0 102 122 16 36 3 88 0.72 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 1_76 - 226 UPF0020 PF01170.13 180 3e-06 20.5 0.0 2 2 2.9e-05 0.0049 10.1 0.0 27 54 162 188 158 216 0.72 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 2_53 - 213 cobW PF02492.14 178 0.00067 12.7 0.1 1 1 6.9e-06 0.0011 12.0 0.1 2 47 51 95 50 114 0.77 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_58 - 419 Terminase_6 PF03237.10 384 1.9e-20 66.5 0.0 1 1 1.3e-22 2.2e-20 66.3 0.0 4 382 31 403 28 405 0.89 # 46838 # 48094 # 1 # ID=2_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 4_3 - 260 IstB_IS21 PF01695.12 178 7.8e-73 237.3 0.1 1 1 2.9e-74 1.6e-72 236.3 0.1 1 178 56 235 55 235 0.98 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_60 - 144 IstB_IS21 PF01695.12 178 4.5e-34 111.0 0.2 1 2 0.041 2.3 1.2 0.2 83 111 4 32 2 33 0.89 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_60 - 144 IstB_IS21 PF01695.12 178 4.5e-34 111.0 0.2 2 2 8.8e-35 4.9e-33 107.6 0.0 1 84 51 134 51 141 0.96 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_24 - 359 IstB_IS21 PF01695.12 178 0.00027 14.0 0.0 1 1 1.1e-05 0.00058 12.9 0.0 52 81 56 85 51 100 0.83 # 22301 # 23377 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_51 - 389 MipZ PF09140.6 261 3.2e-06 20.0 0.1 1 2 1.7e-07 1.4e-05 17.9 0.0 3 47 109 153 107 168 0.90 # 40783 # 41949 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_51 - 389 MipZ PF09140.6 261 3.2e-06 20.0 0.1 2 2 0.087 7.2 -0.8 0.0 88 128 224 264 211 274 0.76 # 40783 # 41949 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_72 - 412 MipZ PF09140.6 261 9.9e-06 18.4 0.4 1 2 6.6e-05 0.0055 9.4 0.1 1 50 120 174 120 200 0.75 # 55261 # 56496 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_72 - 412 MipZ PF09140.6 261 9.9e-06 18.4 0.4 2 2 0.00044 0.036 6.7 0.0 90 135 247 292 237 297 0.89 # 55261 # 56496 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_74 - 464 AAA_2 PF07724.9 171 0.00035 14.1 0.0 1 1 1.1e-05 0.0018 11.9 0.0 7 83 53 175 48 193 0.84 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_26 - 440 DUF87 PF01935.12 229 0.0001 15.8 0.2 1 1 1.3e-06 0.00022 14.7 0.2 24 47 163 186 162 193 0.91 # 19601 # 20920 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_74 - 464 NB-ARC PF00931.17 287 0.00067 12.2 0.0 1 1 8.9e-06 0.0015 11.0 0.0 20 160 50 226 34 287 0.66 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 464 AAA_22 PF13401.1 131 9.4e-09 29.1 0.1 1 1 8e-10 3.3e-08 27.4 0.1 5 123 50 201 46 209 0.74 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 AAA_22 PF13401.1 131 4.4e-07 23.7 0.0 1 1 2.6e-08 1.1e-06 22.5 0.0 3 86 48 176 42 195 0.73 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_3 - 260 AAA_22 PF13401.1 131 2.8e-06 21.1 0.2 1 2 8.9e-05 0.0037 11.0 0.0 5 21 103 119 99 131 0.83 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 4_3 - 260 AAA_22 PF13401.1 131 2.8e-06 21.1 0.2 2 2 0.0015 0.06 7.1 0.0 88 103 154 181 126 203 0.66 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_60 - 144 AAA_22 PF13401.1 131 0.00056 13.7 0.0 1 1 3.1e-05 0.0013 12.5 0.0 6 24 99 117 94 138 0.83 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_76 - 226 Methyltransf_11 PF08241.7 95 0.00096 13.3 0.0 1 3 0.045 7.5 0.8 0.0 46 65 4 25 2 28 0.77 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 1_76 - 226 Methyltransf_11 PF08241.7 95 0.00096 13.3 0.0 2 3 0.0023 0.38 5.0 0.0 78 93 53 68 46 70 0.85 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 1_76 - 226 Methyltransf_11 PF08241.7 95 0.00096 13.3 0.0 3 3 0.0066 1.1 3.5 0.0 5 41 172 207 168 223 0.74 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 2_53 - 213 PRK PF00485.13 194 6.3e-05 16.2 0.0 1 1 6.8e-07 0.00011 15.4 0.0 1 37 51 87 51 106 0.79 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 KAP_NTPase PF07693.9 325 3.6e-07 23.0 0.0 1 1 2.7e-09 4.5e-07 22.7 0.0 17 115 46 142 37 202 0.69 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 AAA_15 PF13175.1 415 0.0001 15.1 0.0 1 1 7.1e-07 0.00012 14.8 0.0 14 56 41 97 10 143 0.79 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_76 - 226 N6_N4_Mtase PF01555.13 231 4.9e-37 121.2 0.0 1 1 3.1e-37 5.2e-35 114.6 0.0 1 228 21 200 21 203 0.91 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 2_53 - 213 AAA_17 PF13207.1 121 8.7e-07 23.4 0.0 1 1 1.6e-08 1.3e-06 22.8 0.0 1 33 51 86 51 178 0.81 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_60 - 144 AAA_17 PF13207.1 121 2.1e-05 18.9 0.0 1 2 0.049 4.1 1.9 0.0 20 53 8 46 4 91 0.62 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_60 - 144 AAA_17 PF13207.1 121 2.1e-05 18.9 0.0 2 2 3.6e-06 0.0003 15.3 0.0 2 20 100 118 99 136 0.80 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_38 - 639 AAA_21 PF13304.1 303 4.2e-05 17.2 0.0 1 2 0.00046 0.077 6.5 0.0 8 22 42 56 41 97 0.88 # 32664 # 34580 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_38 - 639 AAA_21 PF13304.1 303 4.2e-05 17.2 0.0 2 2 0.00011 0.018 8.5 0.0 204 297 539 615 441 616 0.82 # 32664 # 34580 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_74 - 464 Miro PF08477.8 119 0.00013 16.1 0.2 1 1 2.5e-06 0.00042 14.5 0.1 1 26 51 87 51 181 0.59 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 MobB PF03205.9 140 5.8e-06 19.7 0.0 1 1 1.6e-07 1.4e-05 18.5 0.0 2 37 51 86 50 102 0.89 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_74 - 464 MobB PF03205.9 140 0.0012 12.2 0.0 1 1 3.1e-05 0.0026 11.1 0.0 3 41 52 88 50 98 0.88 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_50 - 520 Helicase_C PF00271.26 78 7.9e-14 45.0 0.0 1 1 1.5e-15 2.4e-13 43.4 0.0 2 78 387 463 386 463 0.97 # 40954 # 42513 # -1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_51 - 389 ArsA_ATPase PF02374.10 305 2.9e-06 20.1 0.0 1 2 3.5e-06 0.00019 14.1 0.0 9 40 115 147 109 154 0.90 # 40783 # 41949 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_51 - 389 ArsA_ATPase PF02374.10 305 2.9e-06 20.1 0.0 2 2 0.0066 0.36 3.4 0.0 125 136 233 244 223 252 0.89 # 40783 # 41949 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_60 - 144 ArsA_ATPase PF02374.10 305 0.00013 14.7 0.0 1 1 3.5e-06 0.0002 14.1 0.0 5 34 101 130 97 133 0.87 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_72 - 412 ArsA_ATPase PF02374.10 305 0.00052 12.7 0.0 1 1 2.4e-05 0.0013 11.4 0.0 4 136 123 265 120 267 0.70 # 55261 # 56496 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 4_3 - 260 PhoH PF02562.11 205 2e-07 24.0 0.1 1 1 1.1e-08 5.9e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_60 - 144 PhoH PF02562.11 205 3.5e-06 20.0 0.0 1 1 9.3e-08 5.2e-06 19.4 0.0 16 47 94 125 80 141 0.85 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_58 - 419 PhoH PF02562.11 205 0.0005 12.9 0.0 1 1 8.2e-05 0.0046 9.8 0.0 31 138 36 136 12 146 0.65 # 46838 # 48094 # 1 # ID=2_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 2_53 - 213 T2SE PF00437.15 272 0.00027 13.5 0.1 1 1 2.9e-06 0.00048 12.7 0.1 116 164 37 85 4 109 0.79 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_72 - 412 Methyltransf_24 PF13578.1 106 0.00045 14.7 0.1 1 1 1.9e-05 0.0031 12.0 0.1 4 79 130 265 127 281 0.63 # 55261 # 56496 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 2_53 - 213 Zeta_toxin PF06414.7 201 1.2e-05 18.1 0.0 1 2 2.2e-07 3.6e-05 16.5 0.0 14 52 47 85 37 106 0.80 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 Zeta_toxin PF06414.7 201 1.2e-05 18.1 0.0 2 2 0.062 10 -1.3 0.0 170 185 155 170 122 201 0.61 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_38 - 639 SMC_N PF02463.14 220 6.1e-15 48.6 0.4 1 1 1.3e-16 1.1e-14 47.8 0.4 32 200 41 618 3 635 0.91 # 32664 # 34580 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_53 - 213 SMC_N PF02463.14 220 4.8e-05 16.3 0.6 1 2 0.00081 0.067 6.0 0.1 25 41 50 66 37 73 0.81 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 SMC_N PF02463.14 220 4.8e-05 16.3 0.6 2 2 9.8e-05 0.0081 9.0 0.0 135 204 117 192 67 208 0.64 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_51 - 389 VirC1 PF07015.6 231 1.6e-05 17.6 0.1 1 2 4.9e-05 0.0041 9.8 0.0 4 42 109 147 107 153 0.91 # 40783 # 41949 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_51 - 389 VirC1 PF07015.6 231 1.6e-05 17.6 0.1 2 2 0.0011 0.09 5.4 0.0 100 139 251 290 218 321 0.72 # 40783 # 41949 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_72 - 412 VirC1 PF07015.6 231 0.0012 11.5 0.0 1 2 0.031 2.5 0.7 0.0 4 26 122 144 120 151 0.83 # 55261 # 56496 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_72 - 412 VirC1 PF07015.6 231 0.0012 11.5 0.0 2 2 0.00017 0.014 8.1 0.0 84 154 256 332 243 370 0.69 # 55261 # 56496 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_72 - 412 Fer4_NifH PF00142.13 273 1e-05 18.4 0.0 1 1 1.2e-07 1.9e-05 17.5 0.0 7 71 127 196 122 205 0.79 # 55261 # 56496 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_74 - 464 Arch_ATPase PF01637.13 234 2.2e-12 40.7 0.0 1 1 7.8e-14 3.2e-12 40.2 0.0 1 230 31 266 31 270 0.63 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 Arch_ATPase PF01637.13 234 0.00041 13.7 0.0 1 1 1.2e-05 0.0005 13.4 0.0 18 68 47 97 41 177 0.84 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_26 - 440 Arch_ATPase PF01637.13 234 0.0014 11.9 0.0 1 1 5.5e-05 0.0023 11.3 0.0 30 131 172 265 150 273 0.79 # 19601 # 20920 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 4_3 - 260 Arch_ATPase PF01637.13 234 0.0016 11.8 0.1 1 1 0.00014 0.0057 9.9 0.0 8 37 90 119 87 140 0.79 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_74 - 464 AAA_16 PF13191.1 185 6.3e-17 55.8 0.0 1 1 2.6e-18 1.1e-16 55.0 0.0 1 179 30 190 30 198 0.80 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 AAA_16 PF13191.1 185 3.1e-08 27.4 0.0 1 1 1e-09 4.3e-08 27.0 0.0 12 87 38 107 29 182 0.76 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_60 - 144 AAA_16 PF13191.1 185 7.5e-07 22.9 0.1 1 2 0.01 0.44 4.1 0.0 122 173 20 88 2 96 0.61 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_60 - 144 AAA_16 PF13191.1 185 7.5e-07 22.9 0.1 2 2 9.4e-07 3.9e-05 17.3 0.0 23 61 96 134 87 139 0.81 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 4_3 - 260 AAA_16 PF13191.1 185 0.00013 15.6 1.6 1 1 1.1e-05 0.00048 13.8 0.1 21 41 99 119 87 159 0.78 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 2_38 - 639 AAA_23 PF13476.1 202 1e-18 62.0 0.0 1 1 6.5e-20 1.1e-17 58.7 0.0 1 177 5 245 5 510 0.78 # 32664 # 34580 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_53 - 213 AAA_18 PF13238.1 129 3.3e-06 21.1 0.0 1 1 7.2e-08 6e-06 20.2 0.0 1 39 52 90 52 106 0.77 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_60 - 144 AAA_18 PF13238.1 129 0.00024 15.0 0.1 1 1 7.3e-06 0.00061 13.8 0.0 1 19 100 118 100 139 0.79 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_51 - 389 CbiA PF01656.18 195 1.1e-32 106.7 0.0 1 1 2.7e-34 1.5e-32 106.2 0.0 1 188 109 333 109 340 0.76 # 40783 # 41949 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_72 - 412 CbiA PF01656.18 195 7.4e-23 74.6 0.0 1 1 2.5e-24 1.4e-22 73.7 0.0 1 158 122 329 122 361 0.69 # 55261 # 56496 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_60 - 144 CbiA PF01656.18 195 5.7e-05 16.2 0.0 1 1 2e-06 0.00011 15.2 0.0 9 31 107 129 100 132 0.94 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_24 - 359 KaiC PF06745.8 227 5.8e-05 15.9 0.0 1 1 1.2e-06 0.0001 15.1 0.0 13 46 41 78 20 98 0.76 # 22301 # 23377 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_74 - 464 KaiC PF06745.8 227 0.00021 14.1 0.0 1 1 5e-06 0.00042 13.1 0.0 19 143 49 188 46 193 0.69 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 464 AAA_14 PF13173.1 128 2.2e-07 24.4 0.0 1 2 7.3e-06 0.0004 13.9 0.0 3 48 50 96 48 117 0.75 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 464 AAA_14 PF13173.1 128 2.2e-07 24.4 0.0 2 2 0.00049 0.027 8.0 0.0 50 97 150 202 127 222 0.80 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 4_3 - 260 AAA_14 PF13173.1 128 2e-06 21.4 0.0 1 1 6.8e-08 3.8e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 2_53 - 213 AAA_14 PF13173.1 128 0.00072 13.1 0.0 1 1 3.4e-05 0.0019 11.7 0.0 2 44 49 90 48 122 0.74 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 AAA_29 PF13555.1 62 1.4e-07 24.6 0.0 1 1 6.2e-09 3.4e-07 23.4 0.0 8 40 35 66 32 71 0.91 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_38 - 639 AAA_29 PF13555.1 62 0.00013 15.1 0.1 1 1 1.4e-05 0.00078 12.6 0.0 31 51 41 61 4 66 0.81 # 32664 # 34580 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 4_3 - 260 AAA_29 PF13555.1 62 0.0012 12.0 0.0 1 1 4.3e-05 0.0024 11.1 0.0 19 59 98 139 89 141 0.72 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_74 - 464 AAA PF00004.24 132 4.9e-08 26.9 0.0 1 1 3.5e-09 1.9e-07 25.0 0.0 2 114 53 208 52 226 0.67 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 4_3 - 260 AAA PF00004.24 132 3.1e-07 24.3 0.0 1 1 9.5e-09 5.3e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_60 - 144 AAA PF00004.24 132 1.2e-05 19.1 0.1 1 1 9.9e-07 5.5e-05 17.0 0.1 1 21 100 120 100 138 0.82 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 4_3 - 260 Bac_DnaA PF00308.13 219 1.8e-09 31.2 0.0 1 1 4.7e-11 2.6e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_74 - 464 Bac_DnaA PF00308.13 219 3.2e-05 17.2 0.0 1 2 2.2e-05 0.0012 12.1 0.0 37 82 52 97 40 113 0.75 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 464 Bac_DnaA PF00308.13 219 3.2e-05 17.2 0.0 2 2 0.019 1 2.5 0.0 79 131 141 193 118 260 0.68 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_60 - 144 Bac_DnaA PF00308.13 219 0.0014 11.9 0.0 1 1 4.2e-05 0.0023 11.2 0.0 34 68 97 129 71 136 0.77 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_74 - 464 Sigma54_activat PF00158.21 168 0.00012 15.2 0.0 1 1 4.1e-06 0.00023 14.3 0.0 11 67 37 96 33 100 0.79 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 Sigma54_activat PF00158.21 168 0.00022 14.4 0.1 1 2 2.9e-05 0.0016 11.6 0.0 16 51 43 78 30 96 0.78 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 Sigma54_activat PF00158.21 168 0.00022 14.4 0.1 2 2 0.078 4.3 0.4 0.1 131 150 174 194 155 208 0.67 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_3 - 260 Sigma54_activat PF00158.21 168 0.00023 14.3 0.1 1 1 2.5e-05 0.0014 11.8 0.1 18 53 98 133 82 198 0.72 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 2_53 - 213 DUF258 PF03193.11 161 1.9e-05 17.6 0.0 1 1 3.8e-07 3.1e-05 16.8 0.0 25 85 38 111 13 119 0.76 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_3 - 260 DUF258 PF03193.11 161 2.2e-05 17.3 0.0 1 1 3.9e-07 3.2e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_72 - 412 AAA_31 PF13614.1 157 2e-07 24.7 0.0 1 2 4.9e-05 0.0027 11.3 0.0 2 90 121 214 120 229 0.80 # 55261 # 56496 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_72 - 412 AAA_31 PF13614.1 157 2e-07 24.7 0.0 2 2 8.2e-05 0.0045 10.5 0.0 109 148 247 285 231 290 0.87 # 55261 # 56496 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_51 - 389 AAA_31 PF13614.1 157 5.2e-06 20.1 0.1 1 2 2.4e-05 0.0013 12.3 0.0 2 49 108 155 107 178 0.86 # 40783 # 41949 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_51 - 389 AAA_31 PF13614.1 157 5.2e-06 20.1 0.1 2 2 0.0029 0.16 5.5 0.1 116 151 229 267 217 271 0.79 # 40783 # 41949 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_60 - 144 AAA_31 PF13614.1 157 0.0004 14.0 0.0 1 1 2.3e-05 0.0013 12.3 0.0 10 36 106 132 85 136 0.93 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_74 - 464 NTPase_1 PF03266.10 168 2.6e-05 17.6 0.1 1 2 0.00011 0.0061 9.9 0.0 1 26 51 76 51 84 0.91 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 464 NTPase_1 PF03266.10 168 2.6e-05 17.6 0.1 2 2 0.0027 0.15 5.4 0.0 62 103 129 168 114 197 0.82 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 NTPase_1 PF03266.10 168 6.7e-05 16.3 0.1 1 1 7.1e-06 0.00039 13.8 0.0 2 31 52 81 51 102 0.95 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_3 - 260 NTPase_1 PF03266.10 168 0.00039 13.8 0.1 1 2 0.0049 0.27 4.5 0.1 2 30 105 133 104 153 0.83 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 4_3 - 260 NTPase_1 PF03266.10 168 0.00039 13.8 0.1 2 2 0.00074 0.041 7.2 0.0 88 112 157 181 144 204 0.72 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_60 - 144 AAA_33 PF13671.1 143 0.00042 13.8 0.3 1 1 1.7e-05 0.0014 12.1 0.1 2 19 100 117 100 129 0.85 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_53 - 213 AAA_33 PF13671.1 143 0.00043 13.8 0.1 1 1 8.5e-06 0.00071 13.1 0.1 1 33 51 94 51 208 0.70 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 KTI12 PF08433.5 270 7.6e-07 22.2 0.1 1 2 1e-07 1.7e-05 17.7 0.0 4 41 52 89 50 103 0.89 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 KTI12 PF08433.5 270 7.6e-07 22.2 0.1 2 2 0.0043 0.72 2.6 0.0 187 218 149 180 136 209 0.65 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_76 - 226 Methyltransf_26 PF13659.1 117 5.2e-13 42.7 0.1 1 2 1.9e-08 3.1e-06 20.8 0.0 53 114 3 71 2 74 0.77 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 1_76 - 226 Methyltransf_26 PF13659.1 117 5.2e-13 42.7 0.1 2 2 4e-08 6.7e-06 19.8 0.0 4 44 167 206 164 220 0.83 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 1_74 - 464 AAA_30 PF13604.1 196 5e-05 16.5 0.0 1 1 3.9e-06 0.00022 14.5 0.0 4 53 35 84 34 181 0.65 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 AAA_30 PF13604.1 196 7.8e-05 15.9 0.8 1 1 5.9e-06 0.00033 13.9 0.7 17 50 48 81 42 183 0.83 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_26 - 440 AAA_30 PF13604.1 196 0.00078 12.7 0.7 1 2 0.00045 0.025 7.8 0.1 16 63 160 204 155 214 0.70 # 19601 # 20920 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_26 - 440 AAA_30 PF13604.1 196 0.00078 12.7 0.7 2 2 0.041 2.2 1.4 0.0 16 70 225 275 213 277 0.76 # 19601 # 20920 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_53 - 213 FtsK_SpoIIIE PF01580.13 205 0.00038 13.6 0.0 1 2 7.9e-06 0.0013 11.8 0.0 20 58 30 69 17 73 0.81 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 FtsK_SpoIIIE PF01580.13 205 0.00038 13.6 0.0 2 2 0.057 9.5 -0.8 0.0 175 200 159 184 90 197 0.72 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_74 - 464 AAA_35 PF14516.1 331 1.4e-07 24.0 0.0 1 2 7.5e-06 0.0013 11.0 0.0 22 141 40 174 31 192 0.63 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 464 AAA_35 PF14516.1 331 1.4e-07 24.0 0.0 2 2 1.7e-05 0.0027 9.9 0.0 214 292 245 346 230 358 0.84 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_24 - 359 RecA PF00154.16 323 2.5e-47 155.0 0.0 1 1 2.5e-49 4.2e-47 154.3 0.0 22 281 16 306 9 341 0.80 # 22301 # 23377 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 2_53 - 213 ABC_tran PF00005.22 137 2.2e-14 47.6 0.1 1 1 1.8e-13 5.9e-12 39.7 0.1 1 134 39 152 39 155 0.83 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_38 - 639 ABC_tran PF00005.22 137 5.4e-07 23.6 3.5 1 2 0.00087 0.029 8.3 0.1 19 32 41 54 40 78 0.87 # 32664 # 34580 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_38 - 639 ABC_tran PF00005.22 137 5.4e-07 23.6 3.5 2 2 9.4e-06 0.00031 14.7 0.5 79 126 482 565 251 569 0.82 # 32664 # 34580 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 4_3 - 260 ABC_tran PF00005.22 137 0.00025 15.0 0.3 1 1 6e-05 0.002 12.1 0.0 8 30 99 121 93 136 0.86 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_26 - 440 ABC_tran PF00005.22 137 0.00054 13.9 0.1 1 1 4.3e-05 0.0014 12.5 0.1 6 35 157 186 155 209 0.91 # 19601 # 20920 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_74 - 464 ABC_tran PF00005.22 137 0.00076 13.4 0.0 1 1 5.6e-05 0.0019 12.2 0.0 9 52 47 104 38 198 0.52 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_26 - 440 ATP-synt_ab PF00006.20 215 3.9e-77 252.1 0.0 1 1 9.4e-79 5.2e-77 251.7 0.0 2 215 149 358 148 358 0.99 # 19601 # 20920 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_74 - 464 ATP-synt_ab PF00006.20 215 0.0004 13.5 0.0 1 1 1.3e-05 0.00075 12.6 0.0 15 70 49 105 45 165 0.81 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 ATP-synt_ab PF00006.20 215 0.0009 12.4 0.1 1 1 2.5e-05 0.0014 11.7 0.1 13 50 47 84 42 188 0.72 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_76 - 226 Cons_hypoth95 PF03602.10 183 1.5e-05 18.1 0.0 1 2 0.00022 0.036 7.1 0.0 112 156 18 64 2 82 0.65 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 1_76 - 226 Cons_hypoth95 PF03602.10 183 1.5e-05 18.1 0.0 2 2 5e-05 0.0082 9.1 0.0 41 62 162 183 145 213 0.80 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 1_74 - 464 RuvB_N PF05496.7 234 0.00012 14.8 0.0 1 2 6.4e-05 0.0035 10.0 0.0 51 75 50 74 32 104 0.85 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 464 RuvB_N PF05496.7 234 0.00012 14.8 0.0 2 2 0.028 1.5 1.3 0.0 33 61 305 333 293 366 0.78 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_60 - 144 RuvB_N PF05496.7 234 0.00012 14.7 0.0 1 1 2.9e-06 0.00016 14.4 0.0 48 70 95 117 68 137 0.85 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 4_3 - 260 RuvB_N PF05496.7 234 0.00061 12.5 0.0 1 1 1.9e-05 0.0011 11.7 0.0 50 119 102 182 92 190 0.65 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_60 - 144 AAA_19 PF13245.1 76 1.7e-07 24.5 0.2 1 1 1.3e-08 6.9e-07 22.6 0.1 13 48 100 131 87 133 0.88 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 4_3 - 260 AAA_19 PF13245.1 76 0.0007 13.0 0.0 1 1 3.2e-05 0.0018 11.7 0.0 10 37 103 129 96 154 0.81 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 2_58 - 419 AAA_19 PF13245.1 76 0.0012 12.2 0.0 1 1 4.5e-05 0.0025 11.2 0.0 22 58 36 70 20 94 0.79 # 46838 # 48094 # 1 # ID=2_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_74 - 464 Helicase_RecD PF05127.9 177 6.8e-05 16.2 0.0 1 1 7.2e-07 0.00012 15.4 0.0 2 98 54 168 53 175 0.69 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 AAA_10 PF12846.2 304 3.8e-06 20.1 0.4 1 2 4.1e-06 0.00017 14.7 0.0 6 47 54 97 51 107 0.82 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 AAA_10 PF12846.2 304 3.8e-06 20.1 0.4 2 2 0.0076 0.32 4.0 0.1 216 260 140 184 95 192 0.78 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_3 - 260 AAA_10 PF12846.2 304 1.2e-05 18.5 0.8 1 3 0.095 4 0.3 0.1 127 169 38 82 8 95 0.68 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 4_3 - 260 AAA_10 PF12846.2 304 1.2e-05 18.5 0.8 2 3 3.8e-06 0.00016 14.8 0.1 1 33 102 134 102 171 0.89 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 4_3 - 260 AAA_10 PF12846.2 304 1.2e-05 18.5 0.8 3 3 0.097 4 0.3 0.0 202 247 142 192 134 202 0.68 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_60 - 144 AAA_10 PF12846.2 304 0.00041 13.4 0.0 1 1 1.7e-05 0.0007 12.7 0.0 3 35 99 131 98 139 0.87 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_38 - 639 AAA_10 PF12846.2 304 0.016 8.2 6.5 1 2 0.0017 0.07 6.1 1.3 9 24 41 59 39 281 0.88 # 32664 # 34580 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_38 - 639 AAA_10 PF12846.2 304 0.016 8.2 6.5 2 2 0.0054 0.23 4.4 0.3 97 262 465 617 380 629 0.75 # 32664 # 34580 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_38 - 639 SbcCD_C PF13558.1 90 1.8e-07 24.7 0.1 1 1 2.6e-09 4.2e-07 23.5 0.1 12 89 532 601 524 602 0.86 # 32664 # 34580 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_50 - 520 ResIII PF04851.10 184 1.4e-17 57.7 0.0 1 1 3.2e-19 2.6e-17 56.8 0.0 26 183 112 268 97 269 0.82 # 40954 # 42513 # -1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 4_3 - 260 ResIII PF04851.10 184 0.00063 13.2 0.0 1 2 0.00014 0.012 9.1 0.0 8 50 89 127 50 135 0.78 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 4_3 - 260 ResIII PF04851.10 184 0.00063 13.2 0.0 2 2 0.017 1.5 2.3 0.0 112 163 131 181 127 202 0.72 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 2_71 - 1526 RRF PF01765.14 165 0.046 6.8 13.0 1 2 0.0045 0.74 2.9 0.0 98 151 270 323 265 327 0.94 # 56418 # 60995 # 1 # ID=2_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 2_71 - 1526 RRF PF01765.14 165 0.046 6.8 13.0 2 2 4.9e-05 0.0082 9.2 2.2 108 152 748 793 723 804 0.71 # 56418 # 60995 # 1 # ID=2_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_74 - 464 DUF2075 PF09848.4 352 4.9e-05 16.0 0.0 1 1 1.7e-06 0.00014 14.5 0.0 3 133 51 208 49 245 0.67 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 DUF2075 PF09848.4 352 0.0001 15.0 0.2 1 1 3e-06 0.00025 13.7 0.0 3 28 51 76 49 109 0.80 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_50 - 520 DEAD PF00270.24 169 2.8e-13 43.3 0.1 1 2 3.1e-13 1.7e-11 37.5 0.0 2 163 99 268 98 275 0.73 # 40954 # 42513 # -1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 2_50 - 520 DEAD PF00270.24 169 2.8e-13 43.3 0.1 2 2 0.014 0.79 2.8 0.0 64 102 384 425 376 428 0.75 # 40954 # 42513 # -1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_74 - 464 DEAD PF00270.24 169 4.3e-06 19.9 0.1 1 1 2.7e-07 1.5e-05 18.2 0.1 2 157 35 198 34 201 0.65 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_58 - 419 DEAD PF00270.24 169 0.00036 13.7 0.0 1 1 2.2e-05 0.0012 11.9 0.0 25 132 35 130 14 154 0.76 # 46838 # 48094 # 1 # ID=2_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_74 - 464 DUF815 PF05673.8 250 8.3e-06 18.5 0.0 1 1 1.9e-07 1.6e-05 17.6 0.0 44 103 40 99 25 106 0.89 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 DUF815 PF05673.8 250 1.8e-05 17.4 0.0 1 1 3.3e-07 2.7e-05 16.8 0.0 32 103 30 99 7 106 0.83 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 Sigma54_activ_2 PF14532.1 138 2.4e-05 18.0 0.0 1 1 2.3e-07 3.9e-05 17.4 0.0 10 95 38 143 33 192 0.72 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_58 - 419 Terminase_3 PF04466.8 387 1.3e-07 24.6 0.0 1 2 2.1e-09 3.4e-07 23.2 0.0 2 123 24 143 23 161 0.91 # 46838 # 48094 # 1 # ID=2_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 2_58 - 419 Terminase_3 PF04466.8 387 1.3e-07 24.6 0.0 2 2 0.08 13 -1.8 0.0 343 385 363 402 340 404 0.64 # 46838 # 48094 # 1 # ID=2_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_74 - 464 AAA_32 PF13654.1 509 0.00041 12.7 0.0 1 1 4.1e-06 0.00069 11.9 0.0 8 56 29 75 23 82 0.82 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_76 - 226 MethyltransfD12 PF02086.10 260 0.00044 13.4 0.0 1 2 0.013 2.2 1.2 0.0 176 188 19 31 12 90 0.83 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 1_76 - 226 MethyltransfD12 PF02086.10 260 0.00044 13.4 0.0 2 2 2.8e-05 0.0046 10.0 0.0 20 46 163 189 148 197 0.79 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 2_53 - 213 ArgK PF03308.11 267 2.7e-05 16.7 0.0 1 1 5.4e-07 4.5e-05 15.9 0.0 26 63 46 83 15 85 0.87 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_60 - 144 ArgK PF03308.11 267 0.00024 13.5 0.0 1 1 4.4e-06 0.00037 12.9 0.0 28 60 96 128 80 133 0.86 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_53 - 213 PIF1 PF05970.9 364 6.6e-05 15.6 0.0 1 1 6.3e-07 0.00011 14.9 0.0 18 55 45 82 31 85 0.86 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_74 - 464 RNA_helicase PF00910.17 107 6.7e-05 16.7 0.0 1 2 5e-05 0.0042 10.9 0.0 1 26 52 76 52 106 0.80 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 464 RNA_helicase PF00910.17 107 6.7e-05 16.7 0.0 2 2 0.016 1.3 2.9 0.0 45 65 156 176 137 195 0.82 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 RNA_helicase PF00910.17 107 0.00012 15.9 0.1 1 1 8.1e-06 0.00067 13.5 0.1 1 26 52 77 52 107 0.76 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 UPF0079 PF02367.12 123 5.5e-06 19.7 0.0 1 1 6.3e-08 1e-05 18.8 0.0 9 47 43 82 36 96 0.85 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_58 - 419 Terminase_GpA PF05876.7 557 4.5e-05 15.5 0.0 1 1 4.5e-07 7.4e-05 14.8 0.0 34 149 25 132 10 136 0.78 # 46838 # 48094 # 1 # ID=2_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_74 - 464 AAA_24 PF13479.1 213 9.1e-06 19.0 0.1 1 1 3.1e-07 2.6e-05 17.5 0.1 6 33 52 87 49 172 0.80 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_60 - 144 AAA_24 PF13479.1 213 0.00086 12.5 0.0 1 1 1.5e-05 0.0013 12.0 0.0 5 23 99 117 95 129 0.86 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_74 - 464 NACHT PF05729.7 166 1.9e-05 18.0 0.0 1 2 1.3e-05 0.00072 12.9 0.0 1 28 50 77 50 103 0.88 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 464 NACHT PF05729.7 166 1.9e-05 18.0 0.0 2 2 0.017 0.91 2.8 0.0 79 112 158 188 123 220 0.79 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_53 - 213 NACHT PF05729.7 166 4.1e-05 16.9 0.0 1 1 1.7e-06 9.2e-05 15.8 0.0 2 38 51 88 50 112 0.79 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_60 - 144 NACHT PF05729.7 166 0.00035 13.9 0.0 1 1 1.4e-05 0.0008 12.7 0.0 3 27 100 124 98 137 0.84 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_60 - 144 AAA_25 PF13481.1 194 5.1e-07 22.9 0.0 1 1 2.9e-08 6.9e-07 22.4 0.0 22 64 81 129 57 138 0.76 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_24 - 359 AAA_25 PF13481.1 194 6.7e-07 22.5 0.0 1 1 1.3e-07 3.1e-06 20.3 0.0 13 157 27 157 18 216 0.68 # 22301 # 23377 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 4_3 - 260 AAA_25 PF13481.1 194 4.1e-05 16.7 0.0 1 1 2.9e-06 6.9e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_26 - 440 AAA_25 PF13481.1 194 5.9e-05 16.1 0.2 1 1 5.9e-06 0.00014 14.9 0.0 24 157 151 267 135 285 0.69 # 19601 # 20920 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_38 - 639 AAA_25 PF13481.1 194 9.4e-05 15.5 0.3 1 1 2.2e-05 0.00052 13.1 0.0 39 139 39 137 29 143 0.71 # 32664 # 34580 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_53 - 213 AAA_25 PF13481.1 194 0.00032 13.8 0.1 1 2 0.00018 0.0042 10.1 0.0 18 50 30 66 15 88 0.76 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_53 - 213 AAA_25 PF13481.1 194 0.00032 13.8 0.1 2 2 0.081 1.9 1.4 0.1 165 185 162 182 144 186 0.80 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_74 - 464 AAA_25 PF13481.1 194 0.0011 12.0 0.1 1 1 0.00024 0.0056 9.7 0.1 31 59 47 74 24 188 0.73 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_76 - 226 Methyltransf_15 PF09445.5 164 0.0018 11.5 0.0 1 2 0.035 5.8 0.1 0.0 53 79 4 29 2 33 0.90 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 1_76 - 226 Methyltransf_15 PF09445.5 164 0.0018 11.5 0.0 2 2 7.1e-05 0.012 8.8 0.0 3 31 166 194 164 207 0.86 # 60103 # 60780 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 2_50 - 520 SNF2_N PF00176.18 299 3.5e-05 16.3 0.0 1 1 3.5e-07 5.7e-05 15.6 0.0 106 182 186 277 169 285 0.81 # 40954 # 42513 # -1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_60 - 144 AAA_28 PF13521.1 163 0.00032 14.3 0.0 1 2 0.098 8.1 -0.0 0.0 98 125 22 49 6 76 0.55 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_60 - 144 AAA_28 PF13521.1 163 0.00032 14.3 0.0 2 2 1.9e-05 0.0016 12.1 0.0 2 25 100 127 99 136 0.76 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 4_3 - 260 AAA_28 PF13521.1 163 0.0019 11.8 1.6 1 1 5.9e-05 0.0049 10.4 0.2 1 43 104 151 104 172 0.70 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 2_24 - 359 Rad51 PF08423.6 256 6.9e-05 15.4 0.0 1 2 5.7e-06 0.00094 11.7 0.0 32 84 45 91 27 135 0.86 # 22301 # 23377 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 2_24 - 359 Rad51 PF08423.6 256 6.9e-05 15.4 0.0 2 2 0.0078 1.3 1.4 0.0 169 207 195 230 161 262 0.78 # 22301 # 23377 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 2_14 - 412 AAA_5 PF07728.9 139 2.1e-17 56.8 0.0 1 1 8.9e-19 3.7e-17 56.0 0.0 4 126 173 293 172 309 0.92 # 12935 # 14170 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.527 1_74 - 464 AAA_5 PF07728.9 139 5.8e-06 19.7 0.0 1 1 1.2e-06 5.1e-05 16.6 0.0 1 47 51 100 51 194 0.73 # 57849 # 59240 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_60 - 144 AAA_5 PF07728.9 139 6.9e-06 19.5 0.1 1 1 8.1e-07 3.4e-05 17.2 0.0 1 37 99 138 99 140 0.81 # 48075 # 48506 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 4_3 - 260 AAA_5 PF07728.9 139 5.2e-05 16.6 0.5 1 1 1.4e-05 0.0006 13.2 0.2 1 74 104 173 104 180 0.72 # 1109 # 1888 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 2_53 - 213 APS_kinase PF01583.15 157 4.3e-07 23.3 0.0 1 1 5.1e-09 8.5e-07 22.4 0.0 1 40 48 87 48 105 0.84 # 43941 # 44579 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/eef8f02d-7d32-4105-9b1d-3321ec91a5dd # Target file: checkm_output/bins/pm1482/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1482/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/eef8f02d-7d32-4105-9b1d-3321ec91a5dd checkm_output/bins/pm1482/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:18 2020 # [ok]