# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_16 - 228 MipZ PF09140.6 261 2.8e-12 38.7 2.0 1 2 5.9e-06 0.00043 11.8 0.1 2 22 12 32 11 38 0.90 # 13110 # 13793 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.430 1_16 - 228 MipZ PF09140.6 261 2.8e-12 38.7 2.0 2 2 2.5e-10 1.9e-08 26.2 0.3 75 134 65 124 50 167 0.83 # 13110 # 13793 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.430 1_45 - 200 SSB PF00436.20 104 1.1e-44 143.1 0.7 1 1 2.1e-46 1.5e-44 142.6 0.7 1 99 6 105 6 113 0.96 # 38403 # 39002 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_60 - 502 UvrD_C_2 PF13538.1 104 4.6e-11 35.3 0.0 1 1 1.8e-12 1.3e-10 33.9 0.0 22 101 353 455 340 456 0.72 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_9 - 142 Usp PF00582.21 140 1.9e-08 27.1 0.3 1 1 4.4e-10 3.2e-08 26.3 0.3 2 139 4 137 4 138 0.72 # 6936 # 7361 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_36 - 700 DUF87 PF01935.12 229 6.9e-06 18.5 0.0 1 1 4.4e-07 1.6e-05 17.2 0.0 10 63 174 225 143 234 0.89 # 31810 # 33909 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_26 - 955 DUF87 PF01935.12 229 2.7e-05 16.5 0.0 1 1 2.9e-06 0.00011 14.6 0.0 24 49 510 535 505 543 0.88 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_60 - 502 AAA_22 PF13401.1 131 2.3e-05 17.1 0.0 1 2 1.2e-05 0.00043 12.9 0.0 7 32 18 43 9 117 0.80 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_60 - 502 AAA_22 PF13401.1 131 2.3e-05 17.1 0.0 2 2 0.043 1.6 1.4 0.0 88 103 177 198 128 217 0.67 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_36 - 700 AAA_22 PF13401.1 131 0.00063 12.4 0.0 1 1 4.6e-05 0.0017 11.0 0.0 5 28 187 210 183 250 0.79 # 31810 # 33909 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_60 - 502 PhoH PF02562.11 205 1.7e-05 16.6 0.0 1 2 0.00039 0.029 6.0 0.1 9 42 5 38 1 56 0.73 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_60 - 502 PhoH PF02562.11 205 1.7e-05 16.6 0.0 2 2 7.7e-05 0.0057 8.3 0.0 122 168 186 230 183 240 0.83 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_26 - 955 T2SE PF00437.15 272 0.00024 12.5 0.0 1 2 9.7e-05 0.0072 7.7 0.0 128 163 509 545 503 552 0.75 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_26 - 955 T2SE PF00437.15 272 0.00024 12.5 0.0 2 2 0.0042 0.31 2.3 0.1 16 75 618 676 612 720 0.79 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_41 - 256 AAA_13 PF13166.1 712 0.00042 11.3 1.5 1 1 7.2e-06 0.00054 10.9 1.5 95 194 77 169 59 197 0.72 # 36325 # 37092 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.553 1_16 - 228 CbiA PF01656.18 195 8.2e-13 40.6 0.3 1 1 1.7e-14 1.3e-12 40.0 0.3 1 189 13 184 13 190 0.76 # 13110 # 13793 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.430 1_54 - 463 KaiC PF06745.8 227 2.3e-07 22.6 0.0 1 1 5.3e-09 3.9e-07 21.8 0.0 2 162 190 370 189 381 0.80 # 47202 # 48590 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_26 - 955 AAA_29 PF13555.1 62 0.00016 13.7 0.0 1 1 5.2e-06 0.00039 12.5 0.0 24 49 510 535 498 548 0.78 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_60 - 502 UvrD_C PF13361.1 351 2.6e-11 36.0 0.0 1 1 5.2e-13 3.9e-11 35.4 0.0 278 344 392 455 355 457 0.88 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_61 - 227 N6_Mtase PF02384.11 311 6.9e-08 24.3 0.0 1 1 1.4e-09 1e-07 23.7 0.0 23 114 98 197 90 211 0.80 # 53898 # 54578 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_36 - 700 TraG-D_C PF12696.2 128 2.5e-17 55.5 0.0 1 1 5.8e-19 4.3e-17 54.7 0.0 1 128 502 632 502 632 0.87 # 31810 # 33909 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_54 - 463 DnaB_C PF03796.10 259 3.2e-92 300.5 0.0 1 1 6.8e-94 5e-92 299.9 0.0 2 256 189 445 188 448 0.96 # 47202 # 48590 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_60 - 502 AAA_30 PF13604.1 196 2.8e-06 19.5 0.1 1 2 1e-06 7.6e-05 14.8 0.0 6 63 5 58 1 104 0.68 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_60 - 502 AAA_30 PF13604.1 196 2.8e-06 19.5 0.1 2 2 0.011 0.82 1.7 0.0 119 132 205 218 182 249 0.84 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_26 - 955 FtsK_SpoIIIE PF01580.13 205 7.8e-08 24.5 0.0 1 1 6.5e-09 4.8e-07 21.9 0.0 35 68 506 539 498 550 0.91 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_26 - 955 ABC_tran PF00005.22 137 4.8e-05 16.2 0.1 1 2 6.2e-05 0.0046 9.8 0.0 10 35 508 534 505 546 0.84 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_26 - 955 ABC_tran PF00005.22 137 4.8e-05 16.2 0.1 2 2 0.011 0.79 2.5 0.1 28 96 677 759 675 773 0.69 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_60 - 502 AAA_19 PF13245.1 76 3.3e-07 22.5 0.0 1 1 2.4e-08 1.8e-06 20.2 0.0 9 75 15 73 7 74 0.82 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_26 - 955 AAA_10 PF12846.2 304 1.6e-42 138.4 0.0 1 1 8.6e-44 3.2e-42 137.4 0.0 1 303 509 854 509 855 0.81 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_36 - 700 AAA_10 PF12846.2 304 2.9e-10 32.5 0.0 1 1 7.9e-11 2.9e-09 29.2 0.0 2 298 187 579 187 582 0.64 # 31810 # 33909 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_71 - 298 DUF2407 PF10302.4 97 9e-06 18.4 0.2 1 1 2.5e-07 1.9e-05 17.4 0.2 3 47 29 73 27 126 0.92 # 60572 # 61465 # -1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.445 1_60 - 502 ResIII PF04851.10 184 6.7e-05 15.2 0.0 1 2 2.3e-05 0.00086 11.6 0.0 25 85 15 75 2 100 0.84 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_60 - 502 ResIII PF04851.10 184 6.7e-05 15.2 0.0 2 2 0.032 1.2 1.4 0.0 138 155 175 192 113 224 0.83 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_26 - 955 ResIII PF04851.10 184 0.00042 12.6 0.0 1 2 0.0001 0.0038 9.5 0.0 21 57 506 544 469 620 0.83 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_26 - 955 ResIII PF04851.10 184 0.00042 12.6 0.0 2 2 0.073 2.7 0.2 0.0 138 157 765 784 676 797 0.80 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_60 - 502 Viral_helicase1 PF01443.13 234 5e-09 28.4 0.0 1 3 0.00035 0.026 6.5 0.0 1 51 18 71 18 82 0.68 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_60 - 502 Viral_helicase1 PF01443.13 234 5e-09 28.4 0.0 2 3 6.3e-06 0.00047 12.2 0.0 62 131 183 250 160 298 0.73 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_60 - 502 Viral_helicase1 PF01443.13 234 5e-09 28.4 0.0 3 3 0.00048 0.035 6.0 0.0 179 230 397 455 365 456 0.70 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_26 - 955 DUF853 PF05872.7 504 0.00014 12.7 0.0 1 2 0.0012 0.085 3.5 0.0 17 47 505 535 497 554 0.80 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_26 - 955 DUF853 PF05872.7 504 0.00014 12.7 0.0 2 2 0.00014 0.01 6.6 0.0 257 308 773 822 746 828 0.83 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_36 - 700 TrwB_AAD_bind PF10412.4 386 1.8e-15 48.8 0.0 1 2 6e-09 2.2e-07 22.2 0.1 7 54 178 225 175 228 0.92 # 31810 # 33909 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_36 - 700 TrwB_AAD_bind PF10412.4 386 1.8e-15 48.8 0.0 2 2 1.5e-09 5.5e-08 24.2 0.0 240 377 498 642 467 650 0.79 # 31810 # 33909 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_26 - 955 TrwB_AAD_bind PF10412.4 386 3.6e-05 14.9 0.0 1 2 6.1e-06 0.00023 12.3 0.0 10 41 504 535 496 551 0.84 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_26 - 955 TrwB_AAD_bind PF10412.4 386 3.6e-05 14.9 0.0 2 2 0.044 1.6 -0.4 0.1 218 314 748 843 738 877 0.72 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_60 - 502 AAA_11 PF13086.1 236 0.00018 13.6 0.0 1 2 0.04 2.9 -0.2 0.0 17 41 16 39 2 72 0.69 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_60 - 502 AAA_11 PF13086.1 236 0.00018 13.6 0.0 2 2 1.5e-05 0.0011 11.0 0.0 189 228 180 218 167 219 0.88 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_36 - 700 T4SS-DNA_transf PF02534.9 469 2e-05 15.8 0.0 1 1 1.7e-06 0.00013 13.1 0.0 45 218 187 366 174 651 0.66 # 31810 # 33909 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_60 - 502 UvrD-helicase PF00580.16 315 3e-17 55.3 0.2 1 2 3.3e-07 2.4e-05 16.2 0.1 2 33 4 35 3 46 0.91 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_60 - 502 UvrD-helicase PF00580.16 315 3e-17 55.3 0.2 2 2 1.4e-13 1.1e-11 37.1 0.0 251 306 178 230 149 238 0.87 # 52276 # 53781 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_54 - 463 AAA_25 PF13481.1 194 4.5e-17 54.5 0.0 1 1 1.9e-18 7e-17 53.9 0.0 18 190 192 369 177 373 0.83 # 47202 # 48590 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_26 - 955 AAA_25 PF13481.1 194 0.00028 12.8 0.0 1 1 2.8e-05 0.001 11.0 0.0 23 58 499 534 494 564 0.84 # 22813 # 25677 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.552 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e1b00bce-c02a-4dc8-9466-cbe69d1d14de # Target file: checkm_output/bins/pm1476/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1476/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e1b00bce-c02a-4dc8-9466-cbe69d1d14de checkm_output/bins/pm1476/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:16 2020 # [ok]