# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_35 - 225 Eno-Rase_NADH_b PF12242.3 78 4.6e-05 16.3 0.4 1 1 1.1e-06 0.00013 14.9 0.3 40 74 4 37 2 41 0.83 # 42730 # 43404 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_4 - 399 MipZ PF09140.6 261 5e-07 22.1 0.2 1 2 2.3e-05 0.0026 9.9 0.0 2 53 110 166 109 190 0.73 # 1276 # 2472 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_4 - 399 MipZ PF09140.6 261 5e-07 22.1 0.2 2 2 2e-05 0.0023 10.1 0.1 90 135 236 281 222 287 0.89 # 1276 # 2472 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_35 - 225 NmrA PF05368.8 233 3.8e-05 16.1 0.3 1 1 4.4e-07 5e-05 15.7 0.3 1 74 6 104 6 151 0.70 # 42730 # 43404 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_24 - 257 AAA_22 PF13401.1 131 4.4e-05 16.7 0.0 1 1 1.6e-06 0.00018 14.7 0.0 5 30 65 90 61 161 0.72 # 32544 # 33314 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_43 - 253 AAA_15 PF13175.1 415 0.00059 12.0 0.3 1 2 0.00066 0.075 5.0 0.0 27 42 33 48 13 90 0.83 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_43 - 253 AAA_15 PF13175.1 415 0.00059 12.0 0.3 2 2 0.00066 0.075 5.0 0.2 373 397 160 184 151 191 0.92 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_43 - 253 AAA_21 PF13304.1 303 5.1e-16 52.5 0.1 1 2 5.8e-10 6.5e-08 25.9 0.1 4 28 33 59 31 80 0.74 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_43 - 253 AAA_21 PF13304.1 303 5.1e-16 52.5 0.1 2 2 1.2e-09 1.3e-07 24.9 0.0 220 285 122 184 84 216 0.76 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_36 - 1054 Helicase_C PF00271.26 78 1.7e-08 27.4 0.0 1 1 4.3e-10 4.8e-08 25.9 0.0 36 77 884 926 866 927 0.85 # 43411 # 46572 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_43 - 253 SMC_N PF02463.14 220 4.7e-06 19.0 0.2 1 1 3.6e-07 4e-05 16.0 0.2 28 186 32 184 14 208 0.69 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_4 - 399 Fer4_NifH PF00142.13 273 0.0011 11.2 0.0 1 1 1.7e-05 0.002 10.4 0.0 8 74 117 188 110 197 0.77 # 1276 # 2472 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_24 - 257 AAA_16 PF13191.1 185 1.3e-06 21.5 0.1 1 2 3.1e-07 1.7e-05 17.9 0.0 7 51 50 91 45 107 0.76 # 32544 # 33314 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_24 - 257 AAA_16 PF13191.1 185 1.3e-06 21.5 0.1 2 2 0.044 2.5 1.1 0.0 126 166 107 149 96 166 0.68 # 32544 # 33314 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_43 - 253 AAA_16 PF13191.1 185 5.6e-05 16.2 1.5 1 1 3e-06 0.00017 14.7 1.5 24 63 28 67 15 206 0.77 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_43 - 253 AAA_23 PF13476.1 202 0.0012 12.2 0.1 1 1 1.9e-05 0.0021 11.5 0.1 25 37 34 46 29 51 0.88 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_35 - 225 adh_short PF00106.20 167 5.6e-19 61.7 3.2 1 1 8.6e-21 9.7e-19 61.0 3.2 2 163 5 160 4 164 0.86 # 42730 # 43404 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_4 - 399 CbiA PF01656.18 195 2.7e-21 68.9 0.0 1 1 5e-23 5.7e-21 67.9 0.0 1 143 111 293 111 324 0.74 # 1276 # 2472 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_43 - 253 AAA_29 PF13555.1 62 4.9e-05 15.9 0.1 1 1 8.4e-07 9.5e-05 15.0 0.1 22 40 27 45 16 54 0.82 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_24 - 257 AAA PF00004.24 132 3.4e-07 23.6 0.0 1 1 6.1e-09 6.9e-07 22.6 0.0 2 96 68 161 67 198 0.75 # 32544 # 33314 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_35 - 225 KR PF08659.5 181 1.5e-05 17.8 3.6 1 1 5.1e-07 5.7e-05 15.9 3.6 3 162 6 158 5 164 0.80 # 42730 # 43404 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_7 - 441 Pyr_redox_3 PF13738.1 203 1.2e-19 64.2 0.0 1 2 1.6e-18 1.9e-16 53.8 0.0 73 201 87 218 55 220 0.82 # 6195 # 7517 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 441 Pyr_redox_3 PF13738.1 203 1.2e-19 64.2 0.0 2 2 0.00012 0.014 8.5 0.0 99 144 289 337 229 366 0.73 # 6195 # 7517 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_43 - 253 DUF258 PF03193.11 161 0.00025 13.3 0.0 1 1 3.4e-06 0.00038 12.7 0.0 19 59 11 52 2 96 0.79 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_4 - 399 AAA_31 PF13614.1 157 4.6e-06 19.7 0.0 1 2 0.0019 0.21 4.6 0.0 8 53 116 166 109 209 0.79 # 1276 # 2472 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_4 - 399 AAA_31 PF13614.1 157 4.6e-06 19.7 0.0 2 2 5.7e-06 0.00065 12.7 0.0 109 148 236 274 234 279 0.88 # 1276 # 2472 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_43 - 253 AAA_33 PF13671.1 143 0.00016 14.7 0.0 1 1 7.5e-06 0.00085 12.3 0.0 4 98 33 187 31 198 0.71 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_43 - 253 ABC_tran PF00005.22 137 1.6e-35 115.5 0.0 1 1 1.8e-37 2.1e-35 115.1 0.0 1 137 18 167 18 167 0.97 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_7 - 441 K_oxygenase PF13434.1 341 2.9e-117 384.4 0.0 1 1 3e-119 3.4e-117 384.2 0.0 1 340 2 332 2 333 0.96 # 6195 # 7517 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_35 - 225 RmlD_sub_bind PF04321.12 287 2.3e-06 19.7 0.1 1 1 3e-08 3.4e-06 19.2 0.1 2 88 5 113 4 134 0.80 # 42730 # 43404 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_35 - 225 NAD_binding_10 PF13460.1 183 4.8e-10 32.8 1.0 1 1 5.9e-12 6.7e-10 32.3 1.0 1 79 6 89 6 207 0.66 # 42730 # 43404 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_35 - 225 adh_short_C2 PF13561.1 241 4.6e-11 36.0 0.1 1 1 4.8e-13 5.5e-11 35.7 0.1 5 183 12 181 9 202 0.82 # 42730 # 43404 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_43 - 253 SbcCD_C PF13558.1 90 0.00028 13.9 0.0 1 1 3.8e-05 0.0043 10.1 0.0 28 89 134 182 117 183 0.73 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_36 - 1054 ResIII PF04851.10 184 5.6e-06 19.4 0.1 1 2 7e-07 7.9e-05 15.6 0.0 4 86 15 106 5 136 0.77 # 43411 # 46572 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_36 - 1054 ResIII PF04851.10 184 5.6e-06 19.4 0.1 2 2 0.017 1.9 1.3 0.0 148 183 261 304 236 305 0.77 # 43411 # 46572 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_7 - 441 FMO-like PF00743.14 532 7.4e-07 20.7 0.0 1 2 3.9e-07 4.4e-05 14.9 0.0 85 202 97 199 80 216 0.76 # 6195 # 7517 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 441 FMO-like PF00743.14 532 7.4e-07 20.7 0.0 2 2 0.0009 0.1 3.7 0.0 316 337 317 338 307 348 0.78 # 6195 # 7517 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 441 NAD_binding_9 PF13454.1 156 6.9e-07 22.2 3.9 1 4 2.2e-05 0.0025 10.7 0.1 61 154 63 149 39 151 0.65 # 6195 # 7517 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 441 NAD_binding_9 PF13454.1 156 6.9e-07 22.2 3.9 2 4 0.018 2 1.2 0.1 2 24 185 206 184 222 0.79 # 6195 # 7517 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 441 NAD_binding_9 PF13454.1 156 6.9e-07 22.2 3.9 3 4 0.00025 0.028 7.3 0.0 122 155 293 331 270 332 0.77 # 6195 # 7517 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 441 NAD_binding_9 PF13454.1 156 6.9e-07 22.2 3.9 4 4 0.029 3.2 0.6 0.0 40 78 392 425 369 440 0.72 # 6195 # 7517 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_35 - 225 Epimerase PF01370.16 236 5.8e-08 25.5 0.5 1 2 9.5e-10 1.1e-07 24.6 0.4 1 121 6 135 6 166 0.66 # 42730 # 43404 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_35 - 225 Epimerase PF01370.16 236 5.8e-08 25.5 0.5 2 2 0.083 9.4 -1.4 0.0 63 63 167 167 135 215 0.51 # 42730 # 43404 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_36 - 1054 DEAD PF00270.24 169 5.6e-09 28.8 0.0 1 2 2.8e-06 0.00032 13.3 0.0 15 112 37 135 17 147 0.75 # 43411 # 46572 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_36 - 1054 DEAD PF00270.24 169 5.6e-09 28.8 0.0 2 2 3.7e-06 0.00042 12.9 0.0 118 163 258 304 239 309 0.86 # 43411 # 46572 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_62 - 135 Ribosomal_S11 PF00411.14 110 0.0011 12.2 0.0 1 1 1.3e-05 0.0015 11.9 0.0 69 107 72 110 40 112 0.80 # 70797 # 71201 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_6 - 717 Plug PF07715.10 108 2.2e-22 72.6 1.9 1 1 5.5e-24 6.2e-22 71.1 1.9 3 107 28 129 26 130 0.95 # 3977 # 6127 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_24 - 257 RNA_helicase PF00910.17 107 0.00089 12.6 0.0 1 1 1.6e-05 0.0018 11.6 0.0 2 24 68 90 67 115 0.84 # 32544 # 33314 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_24 - 257 NACHT PF05729.7 166 1.1e-05 18.2 0.0 1 2 7.3e-05 0.0083 8.9 0.0 3 26 67 90 65 107 0.85 # 32544 # 33314 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_24 - 257 NACHT PF05729.7 166 1.1e-05 18.2 0.0 2 2 0.00021 0.023 7.4 0.0 72 163 120 211 105 214 0.74 # 32544 # 33314 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_43 - 253 AAA_25 PF13481.1 194 0.00028 13.4 0.0 1 1 5.1e-06 0.00057 12.4 0.0 30 110 25 98 6 134 0.71 # 55483 # 56241 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_36 - 1054 SNF2_N PF00176.18 299 1.1e-08 27.2 0.0 1 2 1.5e-05 0.0017 10.2 0.0 1 56 18 68 18 88 0.71 # 43411 # 46572 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_36 - 1054 SNF2_N PF00176.18 299 1.1e-08 27.2 0.0 2 2 6.7e-07 7.6e-05 14.6 0.0 128 227 253 372 236 400 0.75 # 43411 # 46572 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/acbd9208-44b4-46b3-88a5-13074a5f03dc # Target file: checkm_output/bins/pm1472/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1472/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/acbd9208-44b4-46b3-88a5-13074a5f03dc checkm_output/bins/pm1472/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:10 2020 # [ok]