# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 436 AAA_15 PF13175.1 415 7.7e-16 47.1 10.2 1 2 0.00018 0.0012 6.9 6.8 4 133 3 201 1 208 0.60 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 AAA_15 PF13175.1 415 7.7e-16 47.1 10.2 2 2 1.6e-14 1.1e-13 40.1 0.1 336 415 303 375 242 375 0.80 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 AAA_21 PF13304.1 303 3.2e-23 72.1 7.2 1 2 4e-06 2.8e-05 13.3 0.0 1 51 21 75 21 82 0.82 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 AAA_21 PF13304.1 303 3.2e-23 72.1 7.2 2 2 3.8e-20 2.7e-19 59.3 4.2 58 303 156 376 125 376 0.71 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 SMC_N PF02463.14 220 9.6e-13 36.9 0.0 1 1 2.5e-12 1.8e-11 32.8 0.0 4 212 2 385 1 391 0.84 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 AAA_23 PF13476.1 202 7e-10 28.7 6.9 1 1 2.6e-10 1.8e-09 27.3 5.7 1 53 2 52 2 292 0.67 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 AAA_29 PF13555.1 62 3.6e-05 12.5 0.1 1 1 1.7e-05 0.00012 10.9 0.0 8 39 7 35 1 44 0.75 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 DUF2813 PF11398.3 373 3e-06 15.6 0.2 1 2 3.2e-05 0.00023 9.4 0.1 5 60 2 56 1 98 0.79 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 DUF2813 PF11398.3 373 3e-06 15.6 0.2 2 2 0.0016 0.011 3.8 0.0 286 302 332 348 325 379 0.75 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 ABC_tran PF00005.22 137 2.1e-05 14.0 0.1 1 2 6.9e-05 0.00048 9.6 0.1 5 36 13 44 10 184 0.83 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 ABC_tran PF00005.22 137 2.1e-05 14.0 0.1 2 2 0.014 0.1 2.1 0.0 123 135 327 339 242 341 0.79 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f556439b-b1f0-4267-9df1-c9af52ccb874 # Target file: checkm_output/bins/pm1471/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1471/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f556439b-b1f0-4267-9df1-c9af52ccb874 checkm_output/bins/pm1471/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:09 2020 # [ok]