# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_24 - 234 UPF0020 PF01170.13 180 5.6e-06 19.5 0.0 1 2 0.00011 0.0082 9.2 0.0 103 120 17 34 5 75 0.83 # 13598 # 14299 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_24 - 234 UPF0020 PF01170.13 180 5.6e-06 19.5 0.0 2 2 0.00019 0.014 8.4 0.0 28 51 170 193 165 227 0.75 # 13598 # 14299 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_28 - 676 UPF0020 PF01170.13 180 0.00035 13.7 0.1 1 2 0.00022 0.016 8.2 0.1 31 45 209 223 201 230 0.88 # 20706 # 22733 # -1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_28 - 676 UPF0020 PF01170.13 180 0.00035 13.7 0.1 2 2 0.01 0.79 2.7 0.0 106 125 292 311 272 318 0.79 # 20706 # 22733 # -1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 4_7 - 271 ABC_ATPase PF09818.4 448 1.4e-06 20.6 1.8 1 2 0.011 1.7 0.5 0.1 241 262 44 66 39 70 0.81 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 ABC_ATPase PF09818.4 448 1.4e-06 20.6 1.8 2 2 4.8e-08 7.4e-06 18.2 0.3 323 372 150 199 140 227 0.80 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 2_37 - 209 MipZ PF09140.6 261 2.7e-21 69.3 0.5 1 2 1.2e-12 1.8e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_37 - 209 MipZ PF09140.6 261 2.7e-21 69.3 0.5 2 2 1.6e-12 2.4e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_37 - 209 YhjQ PF06564.7 244 3.7e-05 16.6 0.4 1 2 1.8e-06 0.00027 13.8 0.3 4 38 3 37 1 50 0.89 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_37 - 209 YhjQ PF06564.7 244 3.7e-05 16.6 0.4 2 2 0.029 4.5 0.0 0.0 108 144 69 103 44 113 0.78 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 4_5 - 301 3HCDH_N PF02737.13 180 2.1e-05 17.7 0.2 1 1 2.1e-07 3.1e-05 17.2 0.2 2 33 90 121 89 138 0.93 # 1158 # 2060 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 2_14 - 171 SSB PF00436.20 104 1.1e-42 137.7 0.3 1 1 8.7e-45 1.3e-42 137.4 0.3 1 103 6 112 6 113 0.97 # 8134 # 8646 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_41 - 1753 UvrD_C_2 PF13538.1 104 1.7e-07 24.9 0.5 1 1 6.5e-09 1e-06 22.4 0.1 3 102 1339 1442 1332 1444 0.76 # 31570 # 36828 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.619 4_5 - 301 Pyr_redox_2 PF07992.9 201 2e-08 27.8 0.1 1 1 1.8e-10 2.8e-08 27.4 0.1 104 197 43 228 18 231 0.91 # 1158 # 2060 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 2_26 - 1086 DEAD_2 PF06733.10 174 0.0013 11.6 0.2 1 1 2.3e-05 0.0035 10.3 0.0 122 156 412 444 404 454 0.86 # 16159 # 19416 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_20 - 880 DUF87 PF01935.12 229 4.1e-06 20.2 0.0 1 1 1.3e-07 2e-05 18.0 0.0 26 223 484 675 479 681 0.77 # 11291 # 13930 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 4_7 - 271 AAA_22 PF13401.1 131 9.8e-05 16.0 1.2 1 1 1.1e-05 0.00084 13.0 1.2 4 25 48 69 43 215 0.65 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 1_41 - 1753 AAA_22 PF13401.1 131 0.00031 14.4 0.1 1 2 0.011 0.88 3.2 0.0 89 121 504 535 467 537 0.72 # 31570 # 36828 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.619 1_41 - 1753 AAA_22 PF13401.1 131 0.00031 14.4 0.1 2 2 0.00079 0.06 7.0 0.0 3 28 985 1010 982 1064 0.79 # 31570 # 36828 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.619 2_37 - 209 SRP54 PF00448.17 196 3.8e-07 23.2 0.1 1 1 1.5e-08 2.3e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 4_7 - 271 AAA_15 PF13175.1 415 0.00032 13.3 0.0 1 2 7.4e-05 0.011 8.2 0.0 15 42 38 68 25 84 0.77 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 AAA_15 PF13175.1 415 0.00032 13.3 0.0 2 2 0.0026 0.4 3.1 0.0 371 410 167 208 154 210 0.78 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 2_24 - 234 N6_N4_Mtase PF01555.13 231 8.5e-33 107.2 0.0 1 2 3.3e-13 5e-11 36.0 0.0 1 113 21 130 21 137 0.85 # 13598 # 14299 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_24 - 234 N6_N4_Mtase PF01555.13 231 8.5e-33 107.2 0.0 2 2 2e-23 3.1e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 13598 # 14299 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_37 - 209 AAA_17 PF13207.1 121 2.8e-05 18.5 0.0 1 1 8.4e-07 6.4e-05 17.3 0.0 9 77 11 84 9 205 0.76 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 4_7 - 271 AAA_17 PF13207.1 121 4.5e-05 17.8 0.0 1 2 6.3e-06 0.00048 14.5 0.0 2 17 51 66 50 105 0.88 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 AAA_17 PF13207.1 121 4.5e-05 17.8 0.0 2 2 0.087 6.7 1.1 0.0 15 43 160 184 159 243 0.69 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 AAA_21 PF13304.1 303 1.5e-10 34.9 0.0 1 2 3.2e-07 2.5e-05 17.8 0.2 1 22 50 71 50 88 0.88 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 AAA_21 PF13304.1 303 1.5e-10 34.9 0.0 2 2 2.6e-06 0.0002 14.9 0.0 209 297 146 208 97 211 0.76 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 3_11 - 408 AAA_21 PF13304.1 303 0.00025 14.5 0.0 1 1 4.5e-06 0.00034 14.1 0.0 228 275 294 341 187 364 0.73 # 13407 # 14630 # -1 # ID=3_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 2_37 - 209 MobB PF03205.9 140 9e-05 15.7 0.1 1 1 1.6e-06 0.00025 14.3 0.0 10 42 11 41 1 46 0.79 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_37 - 209 ArsA_ATPase PF02374.10 305 5.5e-08 25.6 0.8 1 3 1.2e-09 1.8e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_37 - 209 ArsA_ATPase PF02374.10 305 5.5e-08 25.6 0.8 2 3 0.053 8.2 -1.2 0.0 121 135 69 85 47 86 0.75 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_37 - 209 ArsA_ATPase PF02374.10 305 5.5e-08 25.6 0.8 3 3 0.063 9.6 -1.4 0.0 202 234 129 161 116 203 0.69 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 3_11 - 408 SMC_N PF02463.14 220 4.6e-05 16.2 0.2 1 1 6.6e-07 5.1e-05 16.1 0.2 129 187 295 352 63 384 0.74 # 13407 # 14630 # -1 # ID=3_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 4_7 - 271 SMC_N PF02463.14 220 0.00057 12.6 0.0 1 2 0.00087 0.066 5.9 0.0 23 41 47 65 36 73 0.85 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 SMC_N PF02463.14 220 0.00057 12.6 0.0 2 2 0.0018 0.14 4.8 0.0 136 212 149 224 92 231 0.75 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 2_37 - 209 VirC1 PF07015.6 231 3.6e-09 29.5 0.0 1 1 5e-11 7.6e-09 28.4 0.0 3 184 2 179 1 206 0.76 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_37 - 209 Fer4_NifH PF00142.13 273 0.00011 14.9 0.0 1 1 2.3e-06 0.00035 13.3 0.0 8 38 9 39 2 46 0.89 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_40 - 770 AAA_16 PF13191.1 185 2.9e-06 20.9 0.0 1 1 4.2e-07 2.1e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 29261 # 31570 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 2_26 - 1086 AAA_16 PF13191.1 185 8.8e-06 19.3 0.2 1 2 6.6e-06 0.00033 14.1 0.0 5 175 297 459 294 467 0.69 # 16159 # 19416 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 2_26 - 1086 AAA_16 PF13191.1 185 8.8e-06 19.3 0.2 2 2 0.041 2.1 1.8 0.0 31 160 459 596 456 621 0.52 # 16159 # 19416 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 4_7 - 271 AAA_16 PF13191.1 185 1.3e-05 18.8 0.8 1 1 6.2e-07 3.1e-05 17.5 0.7 24 42 48 66 33 213 0.87 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 AAA_18 PF13238.1 129 0.0012 12.7 0.0 1 1 1.6e-05 0.0024 11.7 0.0 1 17 51 67 51 101 0.86 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 3_4 - 517 GFO_IDH_MocA PF01408.17 120 8.5e-05 16.6 0.2 1 2 3.3e-05 0.005 10.9 0.1 27 115 76 166 60 169 0.71 # 4398 # 5948 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 3_4 - 517 GFO_IDH_MocA PF01408.17 120 8.5e-05 16.6 0.2 2 2 0.01 1.6 2.8 0.0 87 119 252 282 225 283 0.76 # 4398 # 5948 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 2_37 - 209 CbiA PF01656.18 195 3.6e-22 72.2 0.0 1 1 4.5e-24 6.9e-22 71.3 0.0 1 154 3 137 3 179 0.78 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 4_7 - 271 AAA_29 PF13555.1 62 9e-05 15.5 0.0 1 1 1.2e-06 0.00018 14.6 0.0 22 40 47 65 36 67 0.84 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 AAA PF00004.24 132 2e-05 18.3 0.2 1 2 0.00026 0.04 7.6 0.1 1 18 51 68 51 87 0.90 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 AAA PF00004.24 132 2e-05 18.3 0.2 2 2 0.00012 0.019 8.7 0.0 16 107 123 207 119 226 0.78 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 2_28 - 676 N6_Mtase PF02384.11 311 4e-52 170.6 0.0 1 1 8.2e-54 6.2e-52 170.0 0.0 5 275 155 460 152 471 0.84 # 20706 # 22733 # -1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_1 - 278 N6_Mtase PF02384.11 311 5.4e-12 38.9 0.0 1 1 1.1e-13 8.5e-12 38.2 0.0 25 117 139 237 130 250 0.85 # 594 # 1427 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 4_7 - 271 DUF258 PF03193.11 161 5.6e-05 15.9 0.0 1 1 6.2e-07 9.5e-05 15.1 0.0 33 56 46 69 22 83 0.77 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 1_40 - 770 TraG-D_C PF12696.2 128 1e-19 64.2 0.0 1 1 1.6e-21 2.4e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 29261 # 31570 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 2_37 - 209 AAA_31 PF13614.1 157 6.4e-06 19.7 0.0 1 2 2.5e-07 3.9e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_37 - 209 AAA_31 PF13614.1 157 6.4e-06 19.7 0.0 2 2 0.055 8.4 -0.2 0.0 109 127 68 86 62 113 0.68 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_24 - 234 Methyltransf_26 PF13659.1 117 4.1e-11 36.5 0.2 1 2 9.7e-07 4.9e-05 16.9 0.0 63 113 13 70 3 86 0.73 # 13598 # 14299 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_24 - 234 Methyltransf_26 PF13659.1 117 4.1e-11 36.5 0.2 2 2 5.9e-07 3e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 13598 # 14299 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_28 - 676 Methyltransf_26 PF13659.1 117 1.8e-08 28.0 0.0 1 1 8.4e-10 4.3e-08 26.7 0.0 4 88 210 310 208 391 0.75 # 20706 # 22733 # -1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_1 - 278 Methyltransf_26 PF13659.1 117 0.00013 15.5 0.1 1 1 5.4e-06 0.00028 14.5 0.1 3 66 171 239 170 271 0.81 # 594 # 1427 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.565 4_5 - 301 XdhC_C PF13478.1 136 0.00062 13.6 0.1 1 1 6.9e-06 0.0011 12.9 0.1 2 64 91 165 90 173 0.71 # 1158 # 2060 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_41 - 1753 AAA_30 PF13604.1 196 1.2e-45 149.0 5.8 1 2 3.5e-07 5.4e-05 16.3 0.7 9 126 423 535 420 562 0.86 # 31570 # 36828 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.619 1_41 - 1753 AAA_30 PF13604.1 196 1.2e-45 149.0 5.8 2 2 5.9e-43 9e-41 133.1 0.5 2 186 970 1157 969 1161 0.94 # 31570 # 36828 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.619 1_20 - 880 FtsK_SpoIIIE PF01580.13 205 0.00019 14.5 0.0 1 1 2.7e-06 0.00041 13.3 0.0 39 63 480 506 466 508 0.85 # 11291 # 13930 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 3_4 - 517 CoA_binding PF02629.14 96 3e-18 59.7 4.0 1 2 0.00052 0.08 7.0 0.0 42 89 92 141 85 145 0.76 # 4398 # 5948 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 3_4 - 517 CoA_binding PF02629.14 96 3e-18 59.7 4.0 2 2 2.7e-18 4.1e-16 52.8 0.2 3 96 190 285 188 285 0.95 # 4398 # 5948 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 4_7 - 271 ABC_tran PF00005.22 137 5.5e-31 101.2 0.0 1 1 9.7e-33 7.4e-31 100.8 0.0 1 136 38 177 38 178 0.90 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 3_11 - 408 ABC_tran PF00005.22 137 0.0011 12.8 0.2 1 1 5e-05 0.0038 11.0 0.2 96 136 282 333 70 334 0.77 # 13407 # 14630 # -1 # ID=3_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 4_5 - 301 K_oxygenase PF13434.1 341 3.2e-05 16.4 0.0 1 1 2.6e-07 4e-05 16.1 0.0 139 210 41 107 19 184 0.86 # 1158 # 2060 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 4_7 - 271 ATP-synt_ab PF00006.20 215 0.00067 12.7 0.1 1 1 7.3e-06 0.0011 11.9 0.1 8 32 41 65 37 76 0.88 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 2_24 - 234 Cons_hypoth95 PF03602.10 183 4.6e-06 19.6 0.0 1 2 0.00012 0.019 7.8 0.0 113 170 19 78 12 86 0.73 # 13598 # 14299 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_24 - 234 Cons_hypoth95 PF03602.10 183 4.6e-06 19.6 0.0 2 2 3.1e-05 0.0048 9.8 0.0 20 60 149 188 142 225 0.73 # 13598 # 14299 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 4_5 - 301 UDPG_MGDP_dh_N PF03721.9 185 5.2e-05 16.2 0.2 1 1 5.5e-07 8.4e-05 15.5 0.2 1 33 88 120 88 125 0.95 # 1158 # 2060 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_41 - 1753 AAA_19 PF13245.1 76 3e-06 20.4 0.4 1 1 4e-08 3e-06 20.4 0.4 8 74 983 1046 975 1050 0.71 # 31570 # 36828 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.619 2_37 - 209 AAA_19 PF13245.1 76 0.00091 12.5 0.1 1 2 0.00019 0.015 8.6 0.0 20 48 11 35 9 44 0.84 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_37 - 209 AAA_19 PF13245.1 76 0.00091 12.5 0.1 2 2 0.048 3.6 1.0 0.0 42 62 135 155 118 180 0.76 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_20 - 880 AAA_10 PF12846.2 304 2.2e-46 152.1 0.0 1 1 9.3e-48 3.5e-46 151.4 0.0 1 294 481 773 481 779 0.87 # 11291 # 13930 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 1_40 - 770 AAA_10 PF12846.2 304 3.3e-09 30.1 0.0 1 1 2.5e-08 9.5e-07 22.0 0.0 3 296 187 494 186 499 0.63 # 29261 # 31570 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 2_37 - 209 AAA_10 PF12846.2 304 0.00024 14.1 0.0 1 1 1e-05 0.00038 13.4 0.0 11 39 11 39 3 67 0.90 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_42 - 132 AAA_10 PF12846.2 304 0.0012 11.8 0.0 1 2 0.00027 0.01 8.7 0.0 241 264 12 35 9 45 0.89 # 35609 # 36004 # -1 # ID=2_42;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 2_42 - 132 AAA_10 PF12846.2 304 0.0012 11.8 0.0 2 2 0.052 2 1.2 0.0 209 235 104 128 66 130 0.72 # 35609 # 36004 # -1 # ID=2_42;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 2_46 - 191 NodS PF05401.6 201 0.0012 11.8 0.0 1 2 0.049 7.4 -0.6 0.0 42 154 34 59 19 69 0.63 # 37539 # 38111 # 1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.674 2_46 - 191 NodS PF05401.6 201 0.0012 11.8 0.0 2 2 2.8e-05 0.0043 9.9 0.0 25 70 99 144 87 172 0.84 # 37539 # 38111 # 1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.674 4_7 - 271 SbcCD_C PF13558.1 90 0.002 11.6 0.3 1 1 3.9e-05 0.006 10.1 0.3 53 84 157 188 145 194 0.76 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 2_26 - 1086 ResIII PF04851.10 184 3e-14 46.7 1.4 1 2 7.4e-16 1.1e-13 44.9 0.1 3 183 295 498 293 499 0.77 # 16159 # 19416 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 2_26 - 1086 ResIII PF04851.10 184 3e-14 46.7 1.4 2 2 0.037 5.6 0.2 0.1 138 158 655 675 587 708 0.72 # 16159 # 19416 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 2_42 - 132 Zot PF05707.7 193 0.00039 13.4 0.0 1 1 4.7e-06 0.00072 12.5 0.0 98 127 5 35 1 46 0.82 # 35609 # 36004 # -1 # ID=2_42;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 4_5 - 301 Pyr_redox PF00070.22 80 4.8e-08 26.9 0.2 1 1 6.9e-10 1.1e-07 25.8 0.1 1 51 89 139 89 169 0.80 # 1158 # 2060 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_40 - 770 TrwB_AAD_bind PF10412.4 386 1.5e-148 488.0 0.0 1 1 2.4e-150 1.9e-148 487.7 0.0 2 386 172 561 171 561 0.99 # 29261 # 31570 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_20 - 880 TrwB_AAD_bind PF10412.4 386 2.1e-05 16.7 0.1 1 1 7.5e-07 5.7e-05 15.3 0.0 16 94 482 556 474 569 0.72 # 11291 # 13930 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 1_41 - 1753 AAA_11 PF13086.1 236 5.7e-05 16.2 2.9 1 2 7.3e-07 0.00011 15.3 0.0 2 75 970 1040 969 1063 0.81 # 31570 # 36828 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.619 1_41 - 1753 AAA_11 PF13086.1 236 5.7e-05 16.2 2.9 2 2 0.046 7.1 -0.4 0.0 3 34 1181 1211 1179 1336 0.70 # 31570 # 36828 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.619 1_40 - 770 T4SS-DNA_transf PF02534.9 469 2.1e-08 26.6 0.0 1 2 0.08 12 -2.3 0.0 130 199 262 330 253 360 0.69 # 29261 # 31570 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_40 - 770 T4SS-DNA_transf PF02534.9 469 2.1e-08 26.6 0.0 2 2 3.3e-10 5.1e-08 25.3 0.0 274 393 392 507 361 559 0.74 # 29261 # 31570 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_20 - 880 Pox_A32 PF04665.7 241 0.00011 15.0 0.0 1 1 1.5e-06 0.00023 14.0 0.0 6 40 474 508 470 523 0.82 # 11291 # 13930 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 4_5 - 301 AlaDh_PNT_C PF01262.16 168 0.00037 13.6 0.0 1 1 4.4e-06 0.00067 12.8 0.0 20 69 87 136 85 155 0.84 # 1158 # 2060 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 4_7 - 271 NACHT PF05729.7 166 0.0013 11.9 0.1 1 1 1.7e-05 0.0025 11.0 0.1 3 18 51 66 49 69 0.89 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 AAA_25 PF13481.1 194 4.7e-05 16.4 0.2 1 2 5.1e-06 0.00039 13.3 0.0 25 50 41 65 20 71 0.80 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 AAA_25 PF13481.1 194 4.7e-05 16.4 0.2 2 2 0.052 3.9 0.3 0.0 167 190 187 210 178 214 0.80 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 2_37 - 209 AAA_25 PF13481.1 194 0.0002 14.3 0.1 1 1 6.2e-06 0.00047 13.1 0.0 42 87 10 44 3 90 0.78 # 31868 # 32494 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_24 - 234 Methyltransf_15 PF09445.5 164 0.0012 12.0 0.0 1 2 0.023 3.5 0.6 0.0 53 80 4 30 2 38 0.91 # 13598 # 14299 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_24 - 234 Methyltransf_15 PF09445.5 164 0.0012 12.0 0.0 2 2 7e-05 0.011 8.8 0.0 3 30 173 200 171 213 0.90 # 13598 # 14299 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_26 - 1086 SNF2_N PF00176.18 299 0.00054 12.3 0.1 1 1 7.6e-06 0.0012 11.2 0.1 1 159 299 459 299 469 0.70 # 16159 # 19416 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 4_7 - 271 AAA_28 PF13521.1 163 9.2e-06 19.2 0.0 1 2 2.2e-06 0.00033 14.1 0.0 2 19 51 68 50 111 0.83 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 AAA_28 PF13521.1 163 9.2e-06 19.2 0.0 2 2 0.0054 0.83 3.1 0.0 94 120 185 212 122 221 0.69 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 4_7 - 271 AAA_5 PF07728.9 139 0.0014 11.8 0.3 1 1 2.7e-05 0.0041 10.3 0.1 2 18 51 67 50 71 0.90 # 4300 # 5112 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1185b722-5dcb-4be1-a100-52764ae7a928 # Target file: checkm_output/bins/pm147/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm147/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1185b722-5dcb-4be1-a100-52764ae7a928 checkm_output/bins/pm147/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:11 2020 # [ok]