# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 60 Mg_chelatase PF01078.16 207 1.6e-05 15.3 0.0 1 1 6.1e-07 1.8e-05 15.1 0.0 24 57 16 49 11 54 0.88 # 6008 # 6187 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_25 - 210 MipZ PF09140.6 261 2.3e-12 37.7 0.2 1 3 3.8e-09 1.1e-07 22.3 0.0 4 39 4 38 1 55 0.81 # 15936 # 16565 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_25 - 210 MipZ PF09140.6 261 2.3e-12 37.7 0.2 2 3 4.9e-05 0.0015 8.8 0.0 94 135 75 116 61 132 0.85 # 15936 # 16565 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_25 - 210 MipZ PF09140.6 261 2.3e-12 37.7 0.2 3 3 0.002 0.06 3.5 0.0 210 236 169 195 136 207 0.78 # 15936 # 16565 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_8 - 60 AAA_22 PF13401.1 131 4.9e-06 18.0 0.0 1 1 3.3e-07 5e-06 17.9 0.0 3 26 13 35 9 55 0.79 # 6008 # 6187 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_12 - 913 AAA_22 PF13401.1 131 5.6e-05 14.5 0.0 1 2 6.3e-05 0.00094 10.6 0.0 5 32 533 560 529 598 0.73 # 7543 # 10281 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_12 - 913 AAA_22 PF13401.1 131 5.6e-05 14.5 0.0 2 2 0.054 0.81 1.1 0.0 77 125 739 789 725 795 0.79 # 7543 # 10281 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_25 - 210 SRP54 PF00448.17 196 1.2e-07 22.6 0.1 1 1 8.2e-09 2.5e-07 21.5 0.1 11 178 11 174 2 178 0.73 # 15936 # 16565 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_12 - 913 AAA_21 PF13304.1 303 9.2e-06 16.9 0.6 1 2 6e-06 0.00018 12.7 0.0 2 25 535 565 534 629 0.75 # 7543 # 10281 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_12 - 913 AAA_21 PF13304.1 303 9.2e-06 16.9 0.6 2 2 0.0098 0.29 2.1 0.3 28 99 681 753 664 798 0.75 # 7543 # 10281 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_25 - 210 ArsA_ATPase PF02374.10 305 3.1e-07 20.9 0.4 1 1 1.7e-08 5e-07 20.2 0.4 4 42 4 41 1 45 0.84 # 15936 # 16565 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_8 - 60 T2SE PF00437.15 272 4e-05 13.8 0.0 1 1 1.4e-06 4.2e-05 13.7 0.0 127 164 13 45 3 55 0.68 # 6008 # 6187 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_12 - 913 SMC_N PF02463.14 220 0.00018 11.9 0.0 1 1 1.5e-05 0.00045 10.7 0.0 18 42 526 550 515 559 0.82 # 7543 # 10281 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_25 - 210 VirC1 PF07015.6 231 7e-11 32.8 0.1 1 1 2.7e-12 8.2e-11 32.6 0.1 6 184 5 179 1 201 0.84 # 15936 # 16565 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_25 - 210 Fer4_NifH PF00142.13 273 1.7e-05 15.3 0.1 1 1 1.2e-06 3.5e-05 14.2 0.1 5 42 6 42 2 47 0.86 # 15936 # 16565 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_8 - 60 AAA_16 PF13191.1 185 1e-05 16.7 0.0 1 1 7.1e-07 1.1e-05 16.7 0.0 18 47 8 36 3 51 0.78 # 6008 # 6187 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_12 - 913 AAA_16 PF13191.1 185 5.2e-05 14.5 0.0 1 1 4.9e-05 0.00074 10.7 0.0 18 51 526 558 516 786 0.51 # 7543 # 10281 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_12 - 913 AAA_23 PF13476.1 202 6.5e-05 14.5 0.0 1 1 5.8e-06 0.00017 13.1 0.0 16 53 526 568 521 684 0.78 # 7543 # 10281 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_3 - 131 adh_short PF00106.20 167 6.8e-12 36.8 0.2 1 1 3.8e-13 1.2e-11 36.1 0.2 122 166 8 52 1 53 0.88 # 2111 # 2503 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 1_25 - 210 CbiA PF01656.18 195 1.2e-23 74.7 0.3 1 1 7.8e-25 2.3e-23 73.8 0.3 2 191 4 175 3 183 0.76 # 15936 # 16565 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_8 - 60 AAA_29 PF13555.1 62 0.00015 12.6 0.0 1 1 6.5e-06 0.0002 12.2 0.0 20 38 12 29 4 35 0.77 # 6008 # 6187 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_8 - 60 AAA PF00004.24 132 0.00013 13.4 0.0 1 1 4.9e-06 0.00015 13.2 0.0 2 32 18 44 17 56 0.71 # 6008 # 6187 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_25 - 210 AAA_31 PF13614.1 157 2e-09 28.8 0.0 1 2 1.4e-09 4.1e-08 24.5 0.1 2 40 2 39 1 44 0.92 # 15936 # 16565 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_25 - 210 AAA_31 PF13614.1 157 2e-09 28.8 0.0 2 2 0.013 0.4 1.8 0.0 115 152 77 113 63 118 0.79 # 15936 # 16565 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_8 - 60 AAA_30 PF13604.1 196 0.00021 12.1 0.0 1 1 7.3e-06 0.00022 12.0 0.0 15 44 11 40 4 50 0.77 # 6008 # 6187 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_8 - 60 FtsK_SpoIIIE PF01580.13 205 1e-05 16.2 0.0 1 1 3.5e-07 1e-05 16.2 0.0 37 57 13 32 3 47 0.79 # 6008 # 6187 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_12 - 913 ABC_tran PF00005.22 137 0.0003 12.3 0.0 1 1 2.7e-05 0.00081 10.9 0.0 13 35 534 556 525 584 0.82 # 7543 # 10281 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_8 - 60 RuvB_N PF05496.7 234 9.1e-05 12.7 0.0 1 1 3.1e-06 9.3e-05 12.7 0.0 48 72 12 36 7 52 0.81 # 6008 # 6187 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_8 - 60 AAA_19 PF13245.1 76 6.1e-06 17.2 0.0 1 1 2.1e-07 6.2e-06 17.2 0.0 11 36 15 39 5 52 0.82 # 6008 # 6187 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_12 - 913 AAA_10 PF12846.2 304 1.3e-35 114.5 0.0 1 1 1.4e-36 2e-35 113.8 0.0 2 293 533 821 532 828 0.86 # 7543 # 10281 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_8 - 60 AAA_10 PF12846.2 304 8.2e-05 13.3 0.0 1 1 6.2e-06 9.3e-05 13.1 0.0 2 17 15 30 14 40 0.82 # 6008 # 6187 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_3 - 131 adh_short_C2 PF13561.1 241 1e-24 78.8 0.4 1 1 3.7e-26 1.1e-24 78.7 0.4 116 241 1 128 1 128 0.93 # 2111 # 2503 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 1_8 - 60 DUF2075 PF09848.4 352 9.7e-05 12.6 0.0 1 1 3.2e-06 9.7e-05 12.6 0.0 3 18 16 31 14 55 0.81 # 6008 # 6187 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_12 - 913 TrwB_AAD_bind PF10412.4 386 0.00034 10.4 0.0 1 2 0.00044 0.013 5.2 0.0 16 35 533 552 520 564 0.79 # 7543 # 10281 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_12 - 913 TrwB_AAD_bind PF10412.4 386 0.00034 10.4 0.0 2 2 0.0024 0.071 2.8 0.0 243 318 748 824 738 841 0.84 # 7543 # 10281 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 405 TIGR00344 TIGR00344 847 3.5e-05 13.0 0.5 1 1 1.8e-06 5.5e-05 12.3 0.5 692 777 195 277 175 284 0.75 # 194 # 1408 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 1_25 - 210 Gtr1_RagA PF04670.7 232 0.0002 11.7 0.0 1 1 9.6e-06 0.00029 11.2 0.0 93 130 117 154 97 174 0.87 # 15936 # 16565 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_25 - 210 AAA_24 PF13479.1 213 3.2e-05 14.8 0.1 1 1 1.8e-06 5.4e-05 14.0 0.1 7 75 5 86 2 91 0.77 # 15936 # 16565 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_12 - 913 AAA_25 PF13481.1 194 0.00023 11.8 0.0 1 1 1.8e-05 0.00053 10.6 0.0 35 97 534 596 528 651 0.73 # 7543 # 10281 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e0c6a796-8250-4634-a296-b2295d42765f # Target file: checkm_output/bins/pm1466/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1466/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e0c6a796-8250-4634-a296-b2295d42765f checkm_output/bins/pm1466/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:06 2020 # [ok]