# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 325 TIGR00250 TIGR00250 130 9.3e-05 14.3 0.0 1 1 3.3e-06 0.00018 13.4 0.0 34 64 49 79 22 92 0.82 # 18494 # 19468 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.346 1_13 - 88 ABC_ATPase PF09818.4 448 0.00014 12.5 0.0 1 1 4.3e-06 0.00024 11.8 0.0 324 363 9 48 4 83 0.79 # 8555 # 8818 # 1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_42 - 422 MipZ PF09140.6 261 3.3e-11 34.8 0.1 1 2 2e-07 1.1e-05 16.6 0.0 2 26 120 144 119 163 0.76 # 28292 # 29557 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.404 1_42 - 422 MipZ PF09140.6 261 3.3e-11 34.8 0.1 2 2 4.4e-07 2.4e-05 15.5 0.0 69 126 232 291 206 301 0.77 # 28292 # 29557 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.404 1_13 - 88 AAA_15 PF13175.1 415 9.1e-05 13.6 0.0 1 1 1.7e-06 9.1e-05 13.6 0.0 372 411 28 66 8 70 0.89 # 8555 # 8818 # 1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_40 - 92 N6_N4_Mtase PF01555.13 231 0.00016 13.2 0.0 1 1 7.5e-05 0.0041 8.6 0.0 91 116 34 63 4 91 0.53 # 25955 # 26230 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_13 - 88 AAA_21 PF13304.1 303 7.9e-11 34.4 0.0 1 1 1.8e-12 9.9e-11 34.1 0.0 233 298 4 66 2 69 0.95 # 8555 # 8818 # 1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_42 - 422 ArsA_ATPase PF02374.10 305 1.1e-08 26.5 1.9 1 2 0.013 0.7 0.8 0.0 214 273 18 79 9 85 0.79 # 28292 # 29557 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.404 1_42 - 422 ArsA_ATPase PF02374.10 305 1.1e-08 26.5 1.9 2 2 6.4e-09 3.5e-07 21.5 0.5 8 136 126 273 119 278 0.65 # 28292 # 29557 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.404 1_13 - 88 SMC_N PF02463.14 220 5.8e-07 21.0 0.0 1 1 1.2e-08 6.7e-07 20.8 0.0 135 203 6 71 4 82 0.83 # 8555 # 8818 # 1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 88 AAA_13 PF13166.1 712 0.00026 11.6 0.0 1 1 5.4e-06 0.0003 11.3 0.0 527 579 25 75 15 78 0.88 # 8555 # 8818 # 1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_28 - 325 GFO_IDH_MocA PF01408.17 120 2.6e-14 45.9 0.0 1 1 7.6e-16 4.2e-14 45.2 0.0 1 110 1 111 1 121 0.88 # 18494 # 19468 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.346 1_42 - 422 CbiA PF01656.18 195 1.2e-20 65.8 0.0 1 1 3.2e-22 1.8e-20 65.2 0.0 1 189 121 363 121 369 0.72 # 28292 # 29557 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.404 1_13 - 88 CobU PF02283.11 167 0.00045 11.7 0.0 1 1 9.1e-06 0.0005 11.6 0.0 87 126 28 69 6 80 0.77 # 8555 # 8818 # 1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_23 - 231 TraG-D_C PF12696.2 128 3.9e-08 25.3 0.4 1 1 7.2e-10 3.9e-08 25.3 0.4 4 94 39 128 36 159 0.83 # 14244 # 14936 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.556 1_42 - 422 AAA_31 PF13614.1 157 2.7e-07 22.7 0.2 1 2 3.1e-07 1.7e-05 16.8 0.0 10 128 128 274 125 298 0.81 # 28292 # 29557 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.404 1_42 - 422 AAA_31 PF13614.1 157 2.7e-07 22.7 0.2 2 2 0.012 0.63 2.0 0.0 17 85 306 381 289 413 0.67 # 28292 # 29557 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.404 1_13 - 88 ABC_tran PF00005.22 137 6.7e-14 44.4 0.0 1 1 1.6e-15 9.1e-14 44.0 0.0 106 137 5 36 1 36 0.94 # 8555 # 8818 # 1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 88 SbcCD_C PF13558.1 90 1.5e-06 20.2 0.2 1 1 7e-07 3.9e-05 15.7 0.2 33 89 8 51 4 52 0.72 # 8555 # 8818 # 1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/95bf7296-5c99-4b67-b754-d61d23925666 # Target file: checkm_output/bins/pm1465/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1465/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/95bf7296-5c99-4b67-b754-d61d23925666 checkm_output/bins/pm1465/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:06 2020 # [ok]