# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_36 - 218 MipZ PF09140.6 261 1.2e-10 32.4 8.3 1 3 1.5e-05 0.00056 10.5 0.7 5 26 6 27 3 38 0.79 # 30803 # 31456 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_36 - 218 MipZ PF09140.6 261 1.2e-10 32.4 8.3 2 3 5.1e-10 1.9e-08 25.1 0.8 82 149 58 125 31 174 0.84 # 30803 # 31456 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_36 - 218 MipZ PF09140.6 261 1.2e-10 32.4 8.3 3 3 0.021 0.81 0.2 0.0 220 255 179 214 144 216 0.78 # 30803 # 31456 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_19 - 343 AAA_22 PF13401.1 131 0.00027 12.6 0.1 1 2 0.079 3 -0.4 0.0 88 125 15 57 6 63 0.74 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_19 - 343 AAA_22 PF13401.1 131 0.00027 12.6 0.1 2 2 4.5e-05 0.0017 10.1 0.1 3 24 159 180 156 202 0.85 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_19 - 343 ATP_bind_1 PF03029.12 238 0.00014 13.0 0.1 1 1 5.6e-06 0.00021 12.4 0.1 1 23 165 187 165 194 0.86 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_19 - 343 AAA_17 PF13207.1 121 0.0028 10.1 3.6 1 1 0.00015 0.0056 9.1 2.8 2 17 163 178 162 180 0.92 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_19 - 343 MobB PF03205.9 140 0.00022 12.5 0.1 1 1 9.9e-06 0.00038 11.7 0.1 2 32 162 191 161 201 0.81 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_19 - 343 T2SE PF00437.15 272 3.9e-53 171.6 0.0 1 1 1.2e-54 4.7e-53 171.3 0.0 6 256 17 294 12 312 0.92 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_19 - 343 Zeta_toxin PF06414.7 201 0.00015 12.4 0.0 1 1 6.4e-06 0.00024 11.7 0.0 17 48 161 193 152 221 0.78 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_36 - 218 VirC1 PF07015.6 231 3.2e-05 14.6 0.2 1 1 1.5e-05 0.00057 10.5 0.2 5 116 5 107 1 199 0.63 # 30803 # 31456 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_36 - 218 CbiA PF01656.18 195 6.9e-08 23.6 5.4 1 1 1e-08 3.9e-07 21.2 5.4 2 177 5 158 4 173 0.76 # 30803 # 31456 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_19 - 343 AAA_29 PF13555.1 62 6.2e-05 14.1 0.0 1 1 6.5e-06 0.00012 13.1 0.0 21 40 158 177 140 182 0.77 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_27 - 916 AAA_29 PF13555.1 62 0.00016 12.8 0.0 1 1 1.9e-05 0.00036 11.6 0.0 21 51 533 561 521 573 0.77 # 22747 # 25494 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.517 1_14 - 612 TraG-D_C PF12696.2 128 3.8e-07 21.6 0.0 1 1 2.1e-08 8e-07 20.6 0.0 22 96 419 497 411 526 0.76 # 10300 # 12135 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.458 1_19 - 343 FtsK_SpoIIIE PF01580.13 205 1.9e-06 19.0 0.3 1 1 9e-08 3.4e-06 18.2 0.3 41 59 163 181 151 184 0.91 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_19 - 343 ABC_tran PF00005.22 137 5.4e-07 21.6 0.0 1 1 2.7e-08 1e-06 20.6 0.0 7 35 156 184 153 207 0.86 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_19 - 343 AAA_19 PF13245.1 76 0.00031 12.1 0.8 1 1 1.9e-05 0.00073 10.9 0.8 7 34 157 184 152 243 0.83 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_27 - 916 AAA_10 PF12846.2 304 1.5e-33 108.0 0.0 1 1 2.5e-34 3.2e-33 106.9 0.0 2 294 535 825 534 832 0.89 # 22747 # 25494 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.517 1_14 - 612 AAA_10 PF12846.2 304 1.3e-07 22.8 0.0 1 2 2.2e-06 2.8e-05 15.1 0.0 4 66 191 260 188 337 0.77 # 10300 # 12135 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.458 1_14 - 612 AAA_10 PF12846.2 304 1.3e-07 22.8 0.0 2 2 0.0016 0.021 5.7 0.0 249 297 422 478 351 482 0.89 # 10300 # 12135 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.458 1_19 - 343 AAA_10 PF12846.2 304 0.00037 11.5 0.3 1 1 4.5e-05 0.00057 10.9 0.3 4 22 163 181 160 189 0.88 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_14 - 612 TrwB_AAD_bind PF10412.4 386 7.8e-07 19.5 0.0 1 2 0.00017 0.0033 7.5 0.0 13 47 186 220 180 231 0.82 # 10300 # 12135 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.458 1_14 - 612 TrwB_AAD_bind PF10412.4 386 7.8e-07 19.5 0.0 2 2 8.7e-05 0.0016 8.5 0.0 265 381 419 540 412 544 0.77 # 10300 # 12135 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.458 1_19 - 343 TrwB_AAD_bind PF10412.4 386 9.3e-05 12.6 0.0 1 1 6.5e-06 0.00012 12.2 0.0 17 39 162 184 148 216 0.86 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_14 - 612 T4SS-DNA_transf PF02534.9 469 1.4e-06 18.6 0.0 1 2 1.4e-05 0.00054 10.1 0.0 31 84 167 230 128 271 0.72 # 10300 # 12135 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.458 1_14 - 612 T4SS-DNA_transf PF02534.9 469 1.4e-06 18.6 0.0 2 2 0.00018 0.0069 6.4 0.0 323 437 417 537 357 542 0.88 # 10300 # 12135 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.458 1_19 - 343 Pox_A32 PF04665.7 241 3.1e-06 18.1 0.0 1 1 1.2e-07 4.6e-06 17.6 0.0 16 46 163 193 153 220 0.75 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_31 - 152 TIGR00922 TIGR00922 172 2.4e-06 18.7 0.0 1 1 9.6e-08 3.7e-06 18.1 0.0 33 102 27 98 4 117 0.73 # 26800 # 27255 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.428 1_27 - 916 NACHT PF05729.7 166 9.3e-05 13.7 0.0 1 1 1.1e-05 0.00022 12.5 0.0 5 31 539 565 536 573 0.87 # 22747 # 25494 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.517 1_19 - 343 NACHT PF05729.7 166 0.00024 12.3 1.2 1 1 2.4e-05 0.00046 11.4 1.2 2 21 162 181 161 184 0.91 # 16615 # 17643 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_27 - 916 AAA_25 PF13481.1 194 8.7e-05 13.5 0.0 1 1 7.7e-06 0.00029 11.8 0.0 36 107 537 625 529 659 0.72 # 22747 # 25494 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.517 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cc0ae2eb-30b0-4f9f-905c-72766c29c522 # Target file: checkm_output/bins/pm1457/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1457/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cc0ae2eb-30b0-4f9f-905c-72766c29c522 checkm_output/bins/pm1457/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:01 2020 # [ok]