# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_34 - 354 UPF0020 PF01170.13 180 3.3e-05 15.6 0.2 1 2 3.3e-05 0.0019 9.9 0.0 89 116 12 38 1 52 0.68 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_34 - 354 UPF0020 PF01170.13 180 3.3e-05 15.6 0.2 2 2 0.003 0.17 3.5 0.0 26 49 306 328 299 347 0.81 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_1 - 388 MipZ PF09140.6 261 0.0003 12.0 0.1 1 2 8.1e-05 0.0047 8.1 0.0 4 47 110 153 107 165 0.87 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 MipZ PF09140.6 261 0.0003 12.0 0.1 2 2 0.0065 0.38 1.8 0.0 87 126 223 262 198 349 0.72 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_34 - 354 Methyltransf_11 PF08241.7 95 0.00015 14.4 0.0 1 1 3.6e-05 0.0021 10.7 0.0 69 95 53 79 1 79 0.67 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_34 - 354 N6_N4_Mtase PF01555.13 231 8.3e-44 141.9 0.0 1 1 5.1e-45 3e-43 140.1 0.0 2 229 30 346 29 348 0.87 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_1 - 388 ArsA_ATPase PF02374.10 305 5.2e-07 21.0 0.1 1 2 5.6e-07 3.3e-05 15.1 0.0 5 36 111 142 108 151 0.88 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 ArsA_ATPase PF02374.10 305 5.2e-07 21.0 0.1 2 2 0.0024 0.14 3.3 0.0 125 136 233 244 223 254 0.84 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_21 - 570 Terminase_1 PF03354.10 477 1.1e-111 365.7 0.0 1 1 2.1e-113 1.2e-111 365.5 0.0 1 476 82 554 82 555 0.92 # 30282 # 31991 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.502 1_1 - 388 VirC1 PF07015.6 231 1.4e-06 19.7 0.3 1 2 1.2e-05 0.00071 10.8 0.0 4 42 109 147 107 153 0.91 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 VirC1 PF07015.6 231 1.4e-06 19.7 0.3 2 2 0.00029 0.017 6.3 0.3 83 198 234 348 222 380 0.73 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 CbiA PF01656.18 195 1.2e-30 98.4 0.0 1 1 2.8e-32 1.6e-30 98.1 0.0 1 174 109 320 109 340 0.79 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 AAA_31 PF13614.1 157 1.1e-08 27.3 0.0 1 2 1.5e-08 9e-07 21.1 0.0 2 50 108 156 107 196 0.91 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 AAA_31 PF13614.1 157 1.1e-08 27.3 0.0 2 2 0.0027 0.16 4.1 0.0 116 151 230 267 207 272 0.81 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_34 - 354 Methyltransf_26 PF13659.1 117 1.5e-16 52.7 0.1 1 2 3e-13 1.8e-11 36.3 0.0 51 116 9 82 3 83 0.84 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_34 - 354 Methyltransf_26 PF13659.1 117 1.5e-16 52.7 0.1 2 2 2.5e-06 0.00014 14.0 0.0 1 35 309 342 309 351 0.91 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_34 - 354 MTS PF05175.9 170 0.00016 13.2 0.0 1 1 6.1e-06 0.00035 12.1 0.0 73 154 3 97 1 107 0.73 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_27 - 403 TIGR00344 TIGR00344 847 6e-06 16.5 1.1 1 1 1.5e-07 8.8e-06 15.9 1.1 684 778 185 276 169 293 0.78 # 35338 # 36546 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.516 1_49 - 1325 Herpes_ori_bp PF02399.10 824 1.1e-08 25.6 0.0 1 2 1.8e-08 1.1e-06 19.0 0.0 44 198 521 675 493 685 0.80 # 46135 # 50109 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_49 - 1325 Herpes_ori_bp PF02399.10 824 1.1e-08 25.6 0.0 2 2 0.00051 0.03 4.3 0.0 271 351 721 812 699 816 0.76 # 46135 # 50109 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_5 - 198 Lambda_tail_I PF06805.7 82 4.9e-20 63.4 0.0 1 1 1.4e-21 7.8e-20 62.7 0.0 1 82 4 89 4 89 0.99 # 16883 # 17476 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.481 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8015e247-6267-4672-ac4b-e8841469859e # Target file: checkm_output/bins/pm1454/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1454/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8015e247-6267-4672-ac4b-e8841469859e checkm_output/bins/pm1454/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:57:00 2020 # [ok]