# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 239 Seryl_tRNA_N PF02403.17 108 2.6e-06 19.5 0.8 1 2 4.7e-08 2.6e-06 19.5 0.8 24 89 30 94 27 103 0.92 # 24326 # 25042 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.524 1_24 - 239 Seryl_tRNA_N PF02403.17 108 2.6e-06 19.5 0.8 2 2 0.0051 0.28 3.4 2.4 40 89 154 202 120 219 0.69 # 24326 # 25042 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.524 1_52 - 228 MipZ PF09140.6 261 1e-08 26.6 0.4 1 2 0.00013 0.0072 7.4 0.0 2 22 12 32 11 36 0.92 # 45584 # 46267 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 1_52 - 228 MipZ PF09140.6 261 1e-08 26.6 0.4 2 2 1e-07 5.7e-06 17.6 0.1 85 140 74 127 48 165 0.81 # 45584 # 46267 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 1_38 - 636 DUF87 PF01935.12 229 2.1e-06 19.7 0.0 1 1 1.4e-07 3.8e-06 18.9 0.0 8 63 174 228 169 273 0.86 # 35129 # 37036 # 1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.531 1_31 - 350 DUF87 PF01935.12 229 0.00013 13.9 0.0 1 1 7.7e-06 0.00021 13.2 0.0 28 47 173 192 152 201 0.89 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_31 - 350 AAA_22 PF13401.1 131 1.5e-05 17.3 0.0 1 1 5.2e-07 2.8e-05 16.3 0.0 3 30 167 194 165 249 0.76 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_31 - 350 ATP_bind_1 PF03029.12 238 0.00011 13.8 0.0 1 1 3.1e-06 0.00017 13.2 0.0 1 23 173 195 173 202 0.89 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_31 - 350 MobB PF03205.9 140 3.5e-05 15.6 0.0 1 1 1.3e-06 6.9e-05 14.6 0.0 2 27 170 194 169 206 0.81 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_31 - 350 T2SE PF00437.15 272 1e-49 160.9 0.0 1 1 4.7e-51 1.3e-49 160.5 0.0 7 267 26 318 21 322 0.93 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_23 - 917 T2SE PF00437.15 272 0.00015 12.7 0.0 1 1 1.1e-05 0.00029 11.8 0.0 114 155 512 562 379 565 0.67 # 21557 # 24307 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.577 1_31 - 350 Zeta_toxin PF06414.7 201 0.00052 11.2 0.0 1 1 2.2e-05 0.0012 10.0 0.0 17 48 169 201 160 224 0.79 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_52 - 228 VirC1 PF07015.6 231 2e-05 15.8 0.0 1 1 4.8e-07 2.7e-05 15.4 0.0 9 218 18 226 11 227 0.76 # 45584 # 46267 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 1_23 - 917 AAA_16 PF13191.1 185 5e-06 18.6 0.0 1 1 1.5e-06 4.2e-05 15.6 0.0 19 166 530 769 520 785 0.60 # 21557 # 24307 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.577 1_31 - 350 AAA_16 PF13191.1 185 0.00026 13.0 0.0 1 1 1.5e-05 0.00042 12.4 0.0 25 51 169 195 164 261 0.86 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_23 - 917 AAA_23 PF13476.1 202 0.00019 13.9 0.0 1 1 7.1e-06 0.00039 12.8 0.0 18 78 534 593 519 647 0.65 # 21557 # 24307 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.577 1_52 - 228 CbiA PF01656.18 195 5.1e-12 37.6 0.4 1 1 9.2e-13 5e-11 34.4 0.4 1 193 13 187 13 189 0.76 # 45584 # 46267 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 1_23 - 917 AAA_29 PF13555.1 62 8.6e-06 17.4 0.0 1 1 7.9e-07 2.2e-05 16.1 0.0 18 47 531 559 516 574 0.77 # 21557 # 24307 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.577 1_31 - 350 AAA_29 PF13555.1 62 0.00019 13.1 0.0 1 1 1.5e-05 0.00042 12.0 0.0 23 40 168 185 160 191 0.85 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_38 - 636 TraG-D_C PF12696.2 128 3.2e-10 32.0 0.0 1 1 1.8e-11 5e-10 31.4 0.0 7 94 406 496 400 527 0.77 # 35129 # 37036 # 1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.531 1_23 - 917 TraG-D_C PF12696.2 128 0.0001 14.3 0.1 1 1 7.3e-06 0.0002 13.3 0.1 1 72 753 825 753 831 0.83 # 21557 # 24307 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.577 1_31 - 350 FtsK_SpoIIIE PF01580.13 205 0.0004 11.9 0.0 1 1 2.2e-05 0.0006 11.4 0.0 41 59 171 189 158 224 0.87 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_23 - 917 FtsK_SpoIIIE PF01580.13 205 0.00048 11.7 0.0 1 1 3.9e-05 0.0011 10.6 0.0 15 56 505 553 495 563 0.68 # 21557 # 24307 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.577 1_31 - 350 ABC_tran PF00005.22 137 9.2e-07 21.3 0.0 1 1 6.4e-08 1.8e-06 20.4 0.0 7 45 164 202 161 219 0.82 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_23 - 917 ABC_tran PF00005.22 137 2.9e-05 16.5 0.0 1 1 2.5e-06 7e-05 15.2 0.0 13 37 537 561 528 569 0.86 # 21557 # 24307 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.577 1_23 - 917 AAA_10 PF12846.2 304 7.1e-43 139.1 0.1 1 1 1.5e-43 2.7e-42 137.2 0.0 2 298 536 830 535 836 0.91 # 21557 # 24307 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.577 1_38 - 636 AAA_10 PF12846.2 304 1.2e-10 33.4 0.0 1 1 8.9e-10 1.6e-08 26.3 0.0 4 299 192 481 189 483 0.72 # 35129 # 37036 # 1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.531 1_31 - 350 AAA_10 PF12846.2 304 3e-05 15.6 0.0 1 1 2.6e-06 4.7e-05 14.9 0.0 4 23 171 190 168 212 0.89 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_31 - 350 DEAD PF00270.24 169 0.00066 11.2 0.0 1 1 2.1e-05 0.0011 10.5 0.0 14 33 168 187 156 241 0.83 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_38 - 636 TrwB_AAD_bind PF10412.4 386 2.5e-10 31.5 0.0 1 2 5.3e-06 9.8e-05 13.1 0.0 11 53 185 227 180 240 0.88 # 35129 # 37036 # 1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.531 1_38 - 636 TrwB_AAD_bind PF10412.4 386 2.5e-10 31.5 0.0 2 2 5.4e-07 1e-05 16.3 0.0 263 373 418 533 302 541 0.82 # 35129 # 37036 # 1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.531 1_31 - 350 TrwB_AAD_bind PF10412.4 386 0.00036 11.2 0.0 1 1 2.6e-05 0.00047 10.8 0.0 17 43 170 196 153 224 0.79 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_23 - 917 TrwB_AAD_bind PF10412.4 386 0.00037 11.2 0.0 1 1 8.3e-05 0.0015 9.2 0.0 15 37 535 557 525 585 0.75 # 21557 # 24307 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.577 1_38 - 636 T4SS-DNA_transf PF02534.9 469 3.9e-08 24.3 0.0 1 2 1.5e-05 0.00081 10.0 0.0 44 84 181 231 128 272 0.76 # 35129 # 37036 # 1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.531 1_38 - 636 T4SS-DNA_transf PF02534.9 469 3.9e-08 24.3 0.0 2 2 4e-06 0.00022 11.9 0.0 252 400 350 498 337 512 0.75 # 35129 # 37036 # 1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.531 1_31 - 350 Pox_A32 PF04665.7 241 3.2e-06 18.6 0.1 1 1 8.5e-08 4.7e-06 18.1 0.1 16 61 171 221 161 236 0.81 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_31 - 350 RNA_helicase PF00910.17 107 0.00016 13.9 0.0 1 1 4.9e-06 0.00027 13.2 0.0 2 36 172 211 171 233 0.78 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_31 - 350 NACHT PF05729.7 166 4.4e-05 15.2 0.0 1 1 1.9e-06 0.0001 14.0 0.0 2 22 170 190 169 195 0.89 # 29342 # 30391 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_23 - 917 AAA_5 PF07728.9 139 0.0002 13.2 0.0 1 1 8.7e-06 0.00048 11.9 0.0 2 25 538 561 537 579 0.84 # 21557 # 24307 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.577 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/476927a5-5107-4ed6-8aec-df7b99a57979 # Target file: checkm_output/bins/pm1452/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1452/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/476927a5-5107-4ed6-8aec-df7b99a57979 checkm_output/bins/pm1452/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:59 2020 # [ok]