# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_36 - 389 MipZ PF09140.6 261 3.9e-06 18.8 0.3 1 2 3.5e-06 0.00032 12.6 0.0 2 47 108 153 107 157 0.87 # 33568 # 34734 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_36 - 389 MipZ PF09140.6 261 3.9e-06 18.8 0.3 2 2 0.0011 0.1 4.3 0.0 88 134 224 270 197 292 0.85 # 33568 # 34734 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_25 - 636 DUF87 PF01935.12 229 3.6e-06 19.7 0.0 1 1 1.4e-07 6.2e-06 18.9 0.0 8 63 174 228 169 273 0.86 # 22306 # 24213 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_18 - 350 DUF87 PF01935.12 229 0.00021 13.9 0.0 1 1 7.7e-06 0.00035 13.2 0.0 28 47 173 192 152 201 0.89 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 350 AAA_22 PF13401.1 131 2.4e-05 17.2 0.0 1 1 5.2e-07 4.7e-05 16.3 0.0 3 30 167 194 165 249 0.76 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 350 ATP_bind_1 PF03029.12 238 0.00019 13.8 0.0 1 1 3.1e-06 0.00028 13.2 0.0 1 23 173 195 173 202 0.89 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_42 - 363 AAA_15 PF13175.1 415 2.7e-14 45.7 0.0 1 2 3.6e-10 3.3e-08 25.7 0.0 2 56 3 55 2 148 0.74 # 40181 # 41269 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_42 - 363 AAA_15 PF13175.1 415 2.7e-14 45.7 0.0 2 2 5.8e-08 5.2e-06 18.4 0.0 372 415 294 335 259 335 0.88 # 40181 # 41269 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_42 - 363 AAA_21 PF13304.1 303 4.7e-31 101.5 0.0 1 1 2.5e-32 2.3e-30 99.3 0.0 1 301 23 334 23 336 0.76 # 40181 # 41269 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_18 - 350 MobB PF03205.9 140 5.9e-05 15.6 0.0 1 1 1.3e-06 0.00011 14.6 0.0 2 27 170 194 169 206 0.81 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_36 - 389 ArsA_ATPase PF02374.10 305 1.6e-06 20.1 0.4 1 2 1.7e-06 0.00015 13.6 0.1 9 36 115 142 109 151 0.89 # 33568 # 34734 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_36 - 389 ArsA_ATPase PF02374.10 305 1.6e-06 20.1 0.4 2 2 0.0011 0.1 4.3 0.0 123 136 231 244 221 251 0.84 # 33568 # 34734 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_18 - 350 T2SE PF00437.15 272 1.7e-49 160.9 0.0 1 1 4.7e-51 2.1e-49 160.5 0.0 7 267 26 318 21 322 0.93 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_10 - 917 T2SE PF00437.15 272 0.00025 12.7 0.0 1 1 1.1e-05 0.00048 11.8 0.0 114 155 512 562 379 565 0.67 # 8734 # 11484 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_18 - 350 Zeta_toxin PF06414.7 201 0.00085 11.2 0.0 1 1 2.2e-05 0.002 10.0 0.0 17 48 169 201 160 224 0.79 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_42 - 363 SMC_N PF02463.14 220 1.1e-15 50.2 0.0 1 2 9.6e-12 8.6e-10 30.9 0.0 1 50 1 46 1 59 0.83 # 40181 # 41269 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_42 - 363 SMC_N PF02463.14 220 1.1e-15 50.2 0.0 2 2 9.3e-08 8.4e-06 17.9 0.0 138 207 273 340 73 356 0.83 # 40181 # 41269 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_36 - 389 VirC1 PF07015.6 231 5.1e-05 15.2 0.0 1 2 0.00028 0.025 6.3 0.0 4 42 109 147 107 154 0.91 # 33568 # 34734 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_36 - 389 VirC1 PF07015.6 231 5.1e-05 15.2 0.0 2 2 0.00026 0.023 6.5 0.0 84 139 235 290 220 316 0.77 # 33568 # 34734 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_10 - 917 AAA_16 PF13191.1 185 1.4e-05 17.9 0.0 1 1 2.7e-06 0.00012 14.8 0.0 19 166 530 769 520 785 0.54 # 8734 # 11484 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_18 - 350 AAA_16 PF13191.1 185 0.00043 13.0 0.0 1 1 1.5e-05 0.00069 12.4 0.0 25 51 169 195 164 261 0.86 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_42 - 363 AAA_23 PF13476.1 202 7e-12 38.8 0.0 1 1 2.1e-13 9.5e-12 38.4 0.0 2 43 5 45 4 156 0.86 # 40181 # 41269 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_10 - 917 AAA_23 PF13476.1 202 0.00031 13.8 0.0 1 1 1.4e-05 0.00065 12.8 0.0 18 78 534 593 519 646 0.66 # 8734 # 11484 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_42 - 363 AAA_13 PF13166.1 712 4.7e-05 14.7 0.0 1 1 7.2e-07 6.5e-05 14.2 0.0 12 39 17 44 7 73 0.77 # 40181 # 41269 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_36 - 389 CbiA PF01656.18 195 4.7e-37 120.0 0.0 1 1 6.9e-39 6.2e-37 119.6 0.0 2 194 110 339 109 340 0.80 # 33568 # 34734 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_10 - 917 AAA_29 PF13555.1 62 1.4e-05 17.4 0.0 1 1 1.2e-06 3.5e-05 16.1 0.0 18 47 531 559 516 574 0.77 # 8734 # 11484 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_42 - 363 AAA_29 PF13555.1 62 0.00011 14.5 0.0 1 1 1e-05 0.00031 13.0 0.0 14 58 12 55 2 60 0.69 # 40181 # 41269 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_18 - 350 AAA_29 PF13555.1 62 0.00031 13.1 0.0 1 1 2.3e-05 0.00069 12.0 0.0 23 40 168 185 160 191 0.85 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_25 - 636 TraG-D_C PF12696.2 128 5.3e-10 32.0 0.0 1 1 1.8e-11 8.3e-10 31.4 0.0 7 94 406 496 400 527 0.77 # 22306 # 24213 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_10 - 917 TraG-D_C PF12696.2 128 0.00016 14.3 0.1 1 1 7.3e-06 0.00033 13.3 0.1 1 72 753 825 753 831 0.83 # 8734 # 11484 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_36 - 389 AAA_31 PF13614.1 157 8.7e-10 31.5 0.0 1 2 1.4e-08 1.2e-06 21.2 0.0 2 49 108 155 107 195 0.92 # 33568 # 34734 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_36 - 389 AAA_31 PF13614.1 157 8.7e-10 31.5 0.0 2 2 0.00018 0.016 7.9 0.1 110 152 227 268 223 272 0.84 # 33568 # 34734 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_42 - 363 AAA_30 PF13604.1 196 0.00078 11.8 0.0 1 1 1.7e-05 0.0016 10.8 0.0 15 55 18 59 9 91 0.77 # 40181 # 41269 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_18 - 350 FtsK_SpoIIIE PF01580.13 205 0.00066 11.9 0.0 1 1 2.2e-05 0.00099 11.4 0.0 41 59 171 189 158 224 0.87 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_10 - 917 FtsK_SpoIIIE PF01580.13 205 0.00078 11.7 0.0 1 1 3.9e-05 0.0017 10.6 0.0 15 56 505 553 495 563 0.68 # 8734 # 11484 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_42 - 363 DUF2813 PF11398.3 373 8.3e-08 24.4 0.3 1 2 6.9e-08 6.2e-06 18.2 0.0 5 50 4 49 1 56 0.88 # 40181 # 41269 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_42 - 363 DUF2813 PF11398.3 373 8.3e-08 24.4 0.3 2 2 0.0012 0.11 4.2 0.1 288 310 295 317 287 342 0.75 # 40181 # 41269 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_42 - 363 ABC_tran PF00005.22 137 6.9e-07 22.4 0.0 1 1 4.5e-07 1.3e-05 18.2 0.0 6 42 16 52 13 302 0.77 # 40181 # 41269 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_18 - 350 ABC_tran PF00005.22 137 1.5e-06 21.3 0.0 1 1 9.6e-08 2.9e-06 20.4 0.0 7 45 164 202 161 219 0.82 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_10 - 917 ABC_tran PF00005.22 137 4.7e-05 16.5 0.0 1 1 3.8e-06 0.00011 15.2 0.0 13 37 537 561 528 569 0.86 # 8734 # 11484 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_10 - 917 AAA_10 PF12846.2 304 3e-42 137.8 0.1 1 1 3.7e-43 1.1e-41 135.9 0.0 2 298 536 830 535 836 0.91 # 8734 # 11484 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_25 - 636 AAA_10 PF12846.2 304 2e-10 33.3 0.0 1 1 2e-09 5.9e-08 25.2 0.0 4 299 192 481 189 483 0.71 # 22306 # 24213 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_18 - 350 AAA_10 PF12846.2 304 4.9e-05 15.6 0.0 1 1 2.6e-06 7.7e-05 14.9 0.0 4 23 171 190 168 212 0.89 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 350 DEAD PF00270.24 169 0.0011 11.2 0.0 1 1 2.1e-05 0.0019 10.5 0.0 14 33 168 187 156 241 0.83 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_25 - 636 TrwB_AAD_bind PF10412.4 386 4.2e-10 31.5 0.0 1 2 5.3e-06 0.00016 13.1 0.0 11 53 185 227 180 240 0.88 # 22306 # 24213 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_25 - 636 TrwB_AAD_bind PF10412.4 386 4.2e-10 31.5 0.0 2 2 5.8e-07 1.7e-05 16.3 0.0 263 373 418 533 322 541 0.81 # 22306 # 24213 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_18 - 350 TrwB_AAD_bind PF10412.4 386 0.00059 11.2 0.0 1 1 2.6e-05 0.00077 10.8 0.0 17 43 170 196 153 224 0.79 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_10 - 917 TrwB_AAD_bind PF10412.4 386 0.00061 11.2 0.0 1 1 8.3e-05 0.0025 9.2 0.0 15 37 535 557 525 585 0.75 # 8734 # 11484 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 1_25 - 636 T4SS-DNA_transf PF02534.9 469 6.8e-08 24.2 0.0 1 2 1.5e-05 0.0013 10.0 0.0 44 84 181 231 129 272 0.76 # 22306 # 24213 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_25 - 636 T4SS-DNA_transf PF02534.9 469 6.8e-08 24.2 0.0 2 2 4e-06 0.00036 11.9 0.0 252 400 350 498 336 512 0.75 # 22306 # 24213 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_18 - 350 Pox_A32 PF04665.7 241 5.2e-06 18.6 0.1 1 1 8.5e-08 7.7e-06 18.1 0.1 16 61 171 221 161 236 0.81 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 350 RNA_helicase PF00910.17 107 0.00026 13.9 0.0 1 1 4.9e-06 0.00045 13.2 0.0 2 36 172 211 171 233 0.78 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 350 NACHT PF05729.7 166 6.9e-05 15.3 0.0 1 1 1.9e-06 0.00017 14.0 0.0 2 22 170 190 169 195 0.89 # 16519 # 17568 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_10 - 917 AAA_5 PF07728.9 139 0.00034 13.1 0.0 1 1 8.7e-06 0.00079 11.9 0.0 2 25 538 561 537 579 0.84 # 8734 # 11484 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.575 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1f847d8d-2ea5-4bcf-b815-80f6a8e4101e # Target file: checkm_output/bins/pm145/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm145/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1f847d8d-2ea5-4bcf-b815-80f6a8e4101e checkm_output/bins/pm145/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:59 2020 # [ok]