# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 331 AAA_13 PF13166.1 712 6.2e-05 12.6 0.1 1 1 3.1e-06 8.4e-05 12.1 0.1 360 441 4 85 2 103 0.90 # 5497 # 6489 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.593 1_9 - 331 DUF3584 PF12128.3 1201 0.00017 10.0 3.3 1 1 1.6e-05 0.00021 9.7 3.3 304 377 12 86 3 100 0.88 # 5497 # 6489 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.593 1_24 - 195 DUF3584 PF12128.3 1201 0.00024 9.5 9.1 1 1 2.3e-05 0.00031 9.1 9.1 601 687 14 106 4 116 0.56 # 18619 # 19203 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bbfc182a-14fe-4f38-86cd-24c15183fb63 # Target file: checkm_output/bins/pm1441/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1441/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bbfc182a-14fe-4f38-86cd-24c15183fb63 checkm_output/bins/pm1441/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:50 2020 # [ok]