# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_56 - 209 MipZ PF09140.6 261 2.2e-21 68.6 0.5 1 3 6.8e-13 5.5e-11 34.6 0.0 2 54 2 53 1 60 0.89 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 MipZ PF09140.6 261 2.2e-21 68.6 0.5 2 3 5.7e-12 4.5e-10 31.6 0.0 87 139 65 117 58 128 0.92 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 MipZ PF09140.6 261 2.2e-21 68.6 0.5 3 3 0.063 5.1 -1.4 0.0 239 257 188 206 168 208 0.70 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 YhjQ PF06564.7 244 8.5e-06 17.8 0.6 1 2 1.1e-06 8.5e-05 14.5 0.2 4 38 3 37 1 49 0.89 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 YhjQ PF06564.7 244 8.5e-06 17.8 0.6 2 2 0.011 0.88 1.4 0.0 116 145 75 104 51 202 0.67 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_28 - 955 DUF87 PF01935.12 229 2.8e-05 16.6 0.0 1 1 1.5e-06 0.00012 14.6 0.0 24 49 510 535 505 543 0.88 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_56 - 209 SRP54 PF00448.17 196 7.3e-08 24.6 0.3 1 1 3.9e-09 3.2e-07 22.6 0.3 4 98 2 91 1 141 0.74 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 AAA_17 PF13207.1 121 8.5e-05 16.0 0.0 1 1 2.1e-06 0.00016 15.1 0.0 9 77 11 83 9 206 0.77 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 MobB PF03205.9 140 9.3e-05 14.8 0.3 1 1 3e-06 0.00024 13.4 0.3 10 41 11 40 1 45 0.79 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 CTP_synth_N PF06418.9 276 0.0008 11.1 1.2 1 1 1.8e-05 0.0014 10.3 1.2 4 40 2 38 1 42 0.93 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 ArsA_ATPase PF02374.10 305 1.3e-07 23.5 2.5 1 3 3.6e-09 2.9e-07 22.3 0.9 3 46 3 46 1 57 0.84 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 ArsA_ATPase PF02374.10 305 1.3e-07 23.5 2.5 2 3 0.042 3.4 -0.9 0.0 117 135 65 85 45 86 0.69 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 ArsA_ATPase PF02374.10 305 1.3e-07 23.5 2.5 3 3 0.072 5.7 -1.6 0.0 198 234 125 161 108 166 0.72 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 VirC1 PF07015.6 231 6.4e-10 31.0 0.1 1 1 2.2e-11 1.7e-09 29.6 0.1 3 172 2 164 1 189 0.73 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 Fer4_NifH PF00142.13 273 4.3e-05 15.4 0.4 1 1 1.2e-06 9.7e-05 14.2 0.1 8 38 9 39 2 46 0.89 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_68 - 462 AAA_23 PF13476.1 202 0.0051 9.7 4.3 1 2 0.00034 0.027 7.3 1.3 106 198 122 233 65 244 0.68 # 61037 # 62422 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_68 - 462 AAA_23 PF13476.1 202 0.0051 9.7 4.3 2 2 0.0054 0.43 3.4 0.1 144 191 349 403 301 437 0.61 # 61037 # 62422 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_56 - 209 CbiA PF01656.18 195 2.7e-22 71.7 0.0 1 1 5.4e-24 4.4e-22 71.0 0.0 1 156 3 139 3 177 0.77 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_28 - 955 AAA_29 PF13555.1 62 0.00016 13.8 0.0 1 1 5.2e-06 0.00042 12.5 0.0 24 49 510 535 498 548 0.78 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_77 - 137 Val_tRNA-synt_C PF10458.4 66 0.00056 12.6 0.8 1 1 7e-06 0.00056 12.6 0.8 1 23 58 80 58 86 0.86 # 72414 # 72824 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_56 - 209 AAA_31 PF13614.1 157 2.5e-07 23.3 0.0 1 2 2.8e-08 2.2e-06 20.3 0.0 2 42 2 42 1 54 0.88 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 AAA_31 PF13614.1 157 2.5e-07 23.3 0.0 2 2 0.045 3.6 0.1 0.0 109 126 68 85 62 112 0.77 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_28 - 955 FtsK_SpoIIIE PF01580.13 205 4.6e-08 25.3 0.0 1 2 0.047 3.8 -0.5 0.0 145 190 314 367 247 377 0.74 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_28 - 955 FtsK_SpoIIIE PF01580.13 205 4.6e-08 25.3 0.0 2 2 6.5e-09 5.2e-07 21.9 0.0 35 68 506 539 498 550 0.91 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_28 - 955 ABC_tran PF00005.22 137 0.00023 14.1 0.0 1 2 6.2e-05 0.005 9.8 0.0 10 35 508 534 505 546 0.84 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_28 - 955 ABC_tran PF00005.22 137 0.00023 14.1 0.0 2 2 0.032 2.5 1.0 0.0 28 96 677 759 675 773 0.68 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_56 - 209 AAA_19 PF13245.1 76 0.00064 12.1 0.2 1 2 0.00011 0.009 8.4 0.1 20 48 11 35 9 43 0.73 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 AAA_19 PF13245.1 76 0.00064 12.1 0.2 2 2 0.026 2.1 0.9 0.0 44 62 137 155 120 180 0.76 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 209 Helicase_RecD PF05127.9 177 0.00029 13.1 0.0 1 1 6.4e-06 0.00051 12.3 0.0 7 80 11 81 5 95 0.80 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_28 - 955 AAA_10 PF12846.2 304 2.2e-42 138.0 0.0 1 1 5.8e-44 4.7e-42 137.0 0.0 1 303 509 854 509 855 0.81 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_28 - 955 ResIII PF04851.10 184 0.00048 12.6 0.0 1 2 5.1e-05 0.0041 9.5 0.0 21 57 506 544 478 619 0.81 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_28 - 955 ResIII PF04851.10 184 0.00048 12.6 0.0 2 2 0.044 3.5 -0.0 0.0 138 157 765 784 720 796 0.77 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_28 - 955 DUF853 PF05872.7 504 0.00015 12.8 0.0 1 2 0.0012 0.092 3.5 0.0 17 47 505 535 497 554 0.80 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_28 - 955 DUF853 PF05872.7 504 0.00015 12.8 0.0 2 2 0.00014 0.011 6.5 0.0 257 308 773 822 747 828 0.84 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_28 - 955 TrwB_AAD_bind PF10412.4 386 4.2e-05 14.8 0.0 1 2 3e-06 0.00024 12.3 0.0 10 41 504 535 496 551 0.84 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_28 - 955 TrwB_AAD_bind PF10412.4 386 4.2e-05 14.8 0.0 2 2 0.024 1.9 -0.5 0.1 219 314 749 843 741 877 0.72 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_56 - 209 AAA_25 PF13481.1 194 7e-05 14.9 0.1 1 1 3.5e-06 0.00014 13.9 0.0 42 83 10 41 3 83 0.82 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_28 - 955 AAA_25 PF13481.1 194 0.00036 12.6 0.0 1 1 2.8e-05 0.0011 11.0 0.0 23 58 499 534 494 564 0.84 # 25955 # 28819 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_56 - 209 APS_kinase PF01583.15 157 0.00048 12.4 0.1 1 1 1.8e-05 0.0014 10.9 0.1 11 41 10 40 1 46 0.84 # 50131 # 50757 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c5cbf737-3b41-44a8-9b90-f5e0d101b448 # Target file: checkm_output/bins/pm1440/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1440/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c5cbf737-3b41-44a8-9b90-f5e0d101b448 checkm_output/bins/pm1440/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:51 2020 # [ok]