# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_38 - 270 UPF0020 PF01170.13 180 0.00012 13.8 0.2 1 1 4.4e-06 0.00025 12.8 0.2 31 97 179 244 172 254 0.80 # 29183 # 29992 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_46 - 219 cobW PF02492.14 178 1.1e-07 23.6 0.0 1 1 3.3e-09 1.9e-07 22.8 0.0 10 107 11 106 3 173 0.65 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_21 - 904 IstB_IS21 PF01695.12 178 0.00022 12.8 0.0 1 1 8e-06 0.00046 11.7 0.0 47 83 506 542 501 552 0.82 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_46 - 219 MipZ PF09140.6 261 1.7e-14 45.6 1.7 1 2 5.5e-12 3.2e-10 31.6 0.2 2 45 2 45 1 56 0.88 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_46 - 219 MipZ PF09140.6 261 1.7e-14 45.6 1.7 2 2 2.3e-06 0.00013 13.2 0.0 89 127 71 109 63 157 0.87 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_46 - 219 YhjQ PF06564.7 244 0.00012 13.6 0.2 1 2 3.5e-05 0.002 9.6 0.1 3 37 2 36 1 40 0.92 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_46 - 219 YhjQ PF06564.7 244 0.00012 13.6 0.2 2 2 0.0063 0.36 2.2 0.0 109 146 72 109 67 214 0.65 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_58 - 1407 UvrD_C_2 PF13538.1 104 1.1e-11 36.9 1.3 1 1 1.2e-12 6.7e-11 34.5 0.1 5 101 963 1103 960 1105 0.68 # 44629 # 48849 # -1 # ID=1_58;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_21 - 904 DUF87 PF01935.12 229 9.9e-07 20.9 0.0 1 1 8.5e-08 2.5e-06 19.6 0.0 27 68 510 550 508 701 0.65 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_2 - 741 DUF87 PF01935.12 229 0.0002 13.3 0.0 1 1 1.7e-05 0.00048 12.1 0.0 26 59 188 220 170 222 0.81 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_21 - 904 AAA_22 PF13401.1 131 2.7e-05 16.5 0.0 1 1 2.9e-06 8.5e-05 14.9 0.0 8 37 510 552 506 642 0.61 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_52 - 209 AAA_22 PF13401.1 131 0.00023 13.5 0.0 1 1 1.5e-05 0.00043 12.6 0.0 77 122 57 105 6 113 0.80 # 38602 # 39228 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_21 - 904 AAA_17 PF13207.1 121 1e-05 18.5 0.0 1 1 8.5e-07 5e-05 16.3 0.1 3 33 510 546 509 643 0.74 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_21 - 904 MobB PF03205.9 140 0.00057 11.7 0.0 1 1 1.9e-05 0.0011 10.8 0.0 4 28 510 534 507 545 0.84 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_46 - 219 ArsA_ATPase PF02374.10 305 7e-07 20.6 0.4 1 2 8.1e-08 4.7e-06 17.9 0.4 8 38 8 38 2 42 0.91 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_46 - 219 ArsA_ATPase PF02374.10 305 7e-07 20.6 0.4 2 2 0.023 1.4 -0.0 0.0 258 293 149 184 94 188 0.82 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_2 - 741 Zeta_toxin PF06414.7 201 0.00014 13.1 0.0 1 1 6e-06 0.00035 11.8 0.0 19 49 188 218 181 237 0.84 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_46 - 219 VirC1 PF07015.6 231 2.3e-06 18.9 0.1 1 1 3.5e-07 2e-05 15.8 0.1 3 182 2 182 1 191 0.65 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_46 - 219 Fer4_NifH PF00142.13 273 1.3e-06 19.9 0.1 1 1 4.7e-08 2.7e-06 18.8 0.1 7 47 8 48 4 56 0.85 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_2 - 741 AAA_16 PF13191.1 185 2e-06 20.0 0.0 1 1 4.8e-07 1.4e-05 17.3 0.0 8 57 155 218 152 314 0.81 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_21 - 904 AAA_16 PF13191.1 185 5.6e-05 15.3 0.0 1 1 4.9e-06 0.00014 14.0 0.0 26 57 508 539 492 591 0.85 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_46 - 219 CbiA PF01656.18 195 1.4e-23 75.5 0.0 1 1 4.3e-25 2.5e-23 74.6 0.0 1 192 3 181 3 183 0.75 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_21 - 904 AAA_29 PF13555.1 62 0.00033 12.4 0.1 1 1 1.6e-05 0.00093 10.9 0.1 25 44 508 527 501 536 0.86 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_58 - 1407 AAA PF00004.24 132 0.00029 13.2 1.1 1 2 0.074 4.3 -0.3 0.0 24 75 530 580 518 608 0.75 # 44629 # 48849 # -1 # ID=1_58;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_58 - 1407 AAA PF00004.24 132 0.00029 13.2 1.1 2 2 6.1e-05 0.0036 9.7 0.0 4 74 674 762 671 780 0.73 # 44629 # 48849 # -1 # ID=1_58;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_38 - 270 N6_Mtase PF02384.11 311 1.4e-12 39.4 0.0 1 1 5.4e-14 3.1e-12 38.2 0.0 25 118 147 246 136 260 0.83 # 29183 # 29992 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_2 - 741 TraG-D_C PF12696.2 128 3e-22 71.0 0.0 1 1 1.9e-23 5.5e-22 70.2 0.0 1 127 421 543 421 544 0.87 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_21 - 904 TraG-D_C PF12696.2 128 0.00029 12.8 0.1 1 1 2.3e-05 0.00066 11.7 0.1 17 74 745 802 735 806 0.88 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_46 - 219 AAA_31 PF13614.1 157 7.7e-08 24.6 0.0 1 1 2.2e-09 1.3e-07 23.9 0.0 3 52 3 52 1 139 0.79 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_21 - 904 AAA_33 PF13671.1 143 4.8e-05 15.4 0.0 1 2 8.3e-05 0.0024 9.9 0.0 4 22 511 529 509 551 0.86 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_21 - 904 AAA_33 PF13671.1 143 4.8e-05 15.4 0.0 2 2 0.013 0.38 2.8 0.0 3 50 817 867 816 888 0.77 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_2 - 741 AAA_33 PF13671.1 143 0.00024 13.2 0.0 1 1 2.2e-05 0.00063 11.8 0.0 3 25 189 215 188 298 0.77 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_2 - 741 KTI12 PF08433.5 270 0.00036 11.9 0.0 1 1 2.2e-05 0.0013 10.1 0.0 5 43 189 227 188 237 0.83 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_38 - 270 Methyltransf_26 PF13659.1 117 2.9e-05 16.3 0.1 1 1 1.2e-06 7.2e-05 15.0 0.0 4 63 180 246 178 262 0.80 # 29183 # 29992 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_58 - 1407 AAA_30 PF13604.1 196 2.2e-44 143.5 7.1 1 2 0.0023 0.13 3.9 0.1 90 127 179 226 127 245 0.79 # 44629 # 48849 # -1 # ID=1_58;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_58 - 1407 AAA_30 PF13604.1 196 2.2e-44 143.5 7.1 2 2 4.4e-45 2.6e-43 140.0 2.9 2 186 652 839 651 843 0.94 # 44629 # 48849 # -1 # ID=1_58;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_21 - 904 FtsK_SpoIIIE PF01580.13 205 7.2e-06 17.7 0.0 1 1 7.8e-07 2.3e-05 16.1 0.0 40 63 508 531 487 553 0.87 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_2 - 741 FtsK_SpoIIIE PF01580.13 205 7.5e-06 17.7 0.0 1 1 6.4e-07 1.8e-05 16.4 0.0 37 62 184 209 161 213 0.81 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_21 - 904 ABC_tran PF00005.22 137 0.00016 14.2 0.0 1 1 1.2e-05 0.00071 12.0 0.0 14 40 509 535 504 581 0.87 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_58 - 1407 AAA_19 PF13245.1 76 2.3e-07 22.7 1.2 1 1 2.4e-08 1.4e-06 20.2 1.1 10 76 668 730 658 730 0.73 # 44629 # 48849 # -1 # ID=1_58;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_21 - 904 AAA_10 PF12846.2 304 5e-53 172.6 0.1 1 1 4e-54 7.7e-53 171.9 0.1 1 290 506 797 506 805 0.91 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_2 - 741 AAA_10 PF12846.2 304 5.2e-14 44.4 0.0 1 2 1.9e-09 3.8e-08 25.2 0.0 3 42 187 226 186 253 0.95 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_2 - 741 AAA_10 PF12846.2 304 5.2e-14 44.4 0.0 2 2 6.7e-07 1.3e-05 16.9 0.0 199 302 399 502 374 504 0.80 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_46 - 219 AAA_10 PF12846.2 304 0.00025 12.6 0.0 1 1 2.1e-05 0.0004 12.0 0.0 11 43 11 45 9 71 0.89 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_2 - 741 Viral_helicase1 PF01443.13 234 2.5e-05 16.0 0.0 1 1 8.1e-07 4.7e-05 15.1 0.0 2 59 189 243 188 250 0.81 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_2 - 741 TrwB_AAD_bind PF10412.4 386 2.2e-142 466.3 0.0 1 1 9.4e-144 2.7e-142 466.0 0.0 2 385 172 562 171 563 0.99 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_21 - 904 TrwB_AAD_bind PF10412.4 386 1.2e-07 22.8 0.0 1 2 2.5e-07 7.1e-06 16.9 0.0 17 71 508 568 503 664 0.84 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_21 - 904 TrwB_AAD_bind PF10412.4 386 1.2e-07 22.8 0.0 2 2 0.0032 0.091 3.4 0.0 261 315 746 800 731 806 0.90 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_58 - 1407 AAA_11 PF13086.1 236 1.3e-05 16.9 8.7 1 4 3.1e-05 0.00091 10.9 0.0 3 76 653 730 651 744 0.80 # 44629 # 48849 # -1 # ID=1_58;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_58 - 1407 AAA_11 PF13086.1 236 1.3e-05 16.9 8.7 2 4 0.022 0.63 1.6 0.0 195 229 749 786 737 789 0.79 # 44629 # 48849 # -1 # ID=1_58;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_58 - 1407 AAA_11 PF13086.1 236 1.3e-05 16.9 8.7 3 4 0.0075 0.22 3.1 0.0 39 115 872 944 809 1126 0.76 # 44629 # 48849 # -1 # ID=1_58;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_58 - 1407 AAA_11 PF13086.1 236 1.3e-05 16.9 8.7 4 4 0.079 2.3 -0.2 3.4 61 149 1309 1391 1216 1404 0.45 # 44629 # 48849 # -1 # ID=1_58;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 741 AAA_11 PF13086.1 236 0.00017 13.3 0.0 1 1 1.9e-05 0.00056 11.6 0.0 20 73 188 241 178 308 0.84 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_2 - 741 T4SS-DNA_transf PF02534.9 469 2.4e-13 41.5 0.0 1 1 3.5e-13 1e-11 36.1 0.0 125 439 257 557 233 577 0.74 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_21 - 904 T4SS-DNA_transf PF02534.9 469 0.0003 11.5 0.1 1 1 1.8e-05 0.00053 10.7 0.1 320 370 745 795 696 805 0.84 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_2 - 741 ArgK PF03308.11 267 1.1e-05 16.4 0.0 1 1 3.3e-07 1.9e-05 15.6 0.0 34 62 190 218 179 223 0.89 # 889 # 3111 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_21 - 904 RNA_helicase PF00910.17 107 0.00011 14.5 0.0 1 1 5.1e-06 0.00029 13.2 0.0 3 37 511 540 509 559 0.79 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_24 - 164 TIGR00922 TIGR00922 172 2.2e-11 35.7 0.8 1 1 4.5e-13 2.6e-11 35.5 0.8 33 149 27 140 10 161 0.83 # 20305 # 20796 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.429 1_46 - 219 AAA_25 PF13481.1 194 6.8e-06 17.7 0.0 1 1 5.2e-07 1.5e-05 16.6 0.0 41 73 9 45 3 60 0.73 # 35223 # 35879 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_21 - 904 AAA_25 PF13481.1 194 0.00023 12.7 0.0 1 1 6.6e-05 0.0019 9.7 0.0 36 63 509 536 502 569 0.80 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_21 - 904 APS_kinase PF01583.15 157 0.00032 12.5 0.0 1 1 3e-05 0.0018 10.1 0.0 7 50 511 554 507 577 0.87 # 16502 # 19213 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f513a1f4-afdf-47c5-aece-7e60773d1038 # Target file: checkm_output/bins/pm1439/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1439/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f513a1f4-afdf-47c5-aece-7e60773d1038 checkm_output/bins/pm1439/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:48 2020 # [ok]